Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0577 and SO0578 are separated by 129 nucleotides SO0578 and SO0579 are separated by 44 nucleotides
SO0577: SO0577 - sensory box histidine kinase/response regulator (NCBI ptt file), at 599,381 to 602,947
SO0577
SO0578: SO0578 - hypothetical protein (NCBI ptt file), at 603,077 to 605,479
SO0578
SO0579: SO0579 - serine/threonine protein kinase, putative (NCBI ptt file), at 605,524 to 607,332
SO0579
Position (kb) 603
604
605
606 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 602.508 kb on + strand, within SO0577 at 602.515 kb on + strand, within SO0577 at 602.523 kb on - strand, within SO0577 at 602.570 kb on + strand, within SO0577 at 602.626 kb on + strand at 602.626 kb on + strand at 602.767 kb on + strand at 602.897 kb on - strand at 602.899 kb on + strand at 602.908 kb on - strand at 603.090 kb on + strand at 603.090 kb on + strand at 603.098 kb on - strand at 603.098 kb on - strand at 603.109 kb on + strand at 603.109 kb on + strand at 603.126 kb on + strand at 603.126 kb on + strand at 603.134 kb on - strand at 603.134 kb on - strand at 603.164 kb on - strand at 603.172 kb on - strand at 603.180 kb on - strand at 603.239 kb on - strand at 603.239 kb on - strand at 603.366 kb on + strand, within SO0578 at 603.385 kb on + strand, within SO0578 at 603.393 kb on - strand, within SO0578 at 603.495 kb on - strand, within SO0578 at 603.543 kb on + strand, within SO0578 at 603.574 kb on - strand, within SO0578 at 603.768 kb on + strand, within SO0578 at 603.768 kb on + strand, within SO0578 at 603.857 kb on - strand, within SO0578 at 603.919 kb on + strand, within SO0578 at 603.926 kb on - strand, within SO0578 at 603.945 kb on + strand, within SO0578 at 603.948 kb on - strand, within SO0578 at 603.979 kb on + strand, within SO0578 at 603.979 kb on + strand, within SO0578 at 603.996 kb on + strand, within SO0578 at 604.097 kb on - strand, within SO0578 at 604.123 kb on - strand, within SO0578 at 604.128 kb on - strand, within SO0578 at 604.128 kb on - strand, within SO0578 at 604.194 kb on + strand, within SO0578 at 604.249 kb on + strand, within SO0578 at 604.249 kb on - strand, within SO0578 at 604.257 kb on - strand, within SO0578 at 604.529 kb on - strand, within SO0578 at 604.529 kb on - strand, within SO0578 at 604.573 kb on - strand, within SO0578 at 604.573 kb on - strand, within SO0578 at 604.573 kb on - strand, within SO0578 at 604.641 kb on - strand, within SO0578 at 604.658 kb on + strand, within SO0578 at 604.684 kb on + strand, within SO0578 at 604.685 kb on - strand, within SO0578 at 604.906 kb on + strand, within SO0578 at 604.914 kb on + strand, within SO0578 at 604.914 kb on + strand, within SO0578 at 604.914 kb on + strand, within SO0578 at 604.914 kb on + strand, within SO0578 at 604.922 kb on - strand, within SO0578 at 604.929 kb on + strand, within SO0578 at 604.937 kb on - strand, within SO0578 at 604.966 kb on + strand, within SO0578 at 605.043 kb on + strand, within SO0578 at 605.043 kb on - strand, within SO0578 at 605.144 kb on + strand, within SO0578 at 605.180 kb on - strand, within SO0578 at 605.214 kb on - strand, within SO0578 at 605.254 kb on + strand at 605.254 kb on + strand at 605.254 kb on + strand at 605.254 kb on + strand at 605.262 kb on - strand at 605.265 kb on + strand at 605.290 kb on + strand at 605.298 kb on - strand at 605.298 kb on - strand at 605.313 kb on - strand at 605.335 kb on + strand at 605.343 kb on - strand at 605.388 kb on - strand at 605.416 kb on + strand at 605.447 kb on + strand at 605.455 kb on - strand at 605.623 kb on + strand at 605.664 kb on - strand at 605.670 kb on + strand at 605.794 kb on - strand, within SO0579 at 605.983 kb on - strand, within SO0579 at 606.005 kb on + strand, within SO0579 at 606.024 kb on + strand, within SO0579 at 606.463 kb on + strand, within SO0579
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 602,508 + SO0577 0.88 +2.7 602,515 + SO0577 0.88 +3.3 602,523 - SO0577 0.88 +3.5 602,570 + SO0577 0.89 +3.7 602,626 + +4.0 602,626 + +3.4 602,767 + +3.4 602,897 - +4.1 602,899 + +1.7 602,908 - +0.5 603,090 + -0.2 603,090 + +0.4 603,098 - -0.1 603,098 - +0.3 603,109 + +0.7 603,109 + +0.7 603,126 + +0.1 603,126 + +0.7 603,134 - +1.6 603,134 - -0.1 603,164 - +0.0 603,172 - +1.1 603,180 - +0.7 603,239 - -1.2 603,239 - +1.0 603,366 + SO0578 0.12 +0.8 603,385 + SO0578 0.13 -0.1 603,393 - SO0578 0.13 +1.2 603,495 - SO0578 0.17 -0.2 603,543 + SO0578 0.19 +1.2 603,574 - SO0578 0.21 +0.6 603,768 + SO0578 0.29 -0.1 603,768 + SO0578 0.29 +1.4 603,857 - SO0578 0.32 +1.2 603,919 + SO0578 0.35 +0.6 603,926 - SO0578 0.35 +0.9 603,945 + SO0578 0.36 +1.8 603,948 - SO0578 0.36 +0.1 603,979 + SO0578 0.38 +0.5 603,979 + SO0578 0.38 +0.7 603,996 + SO0578 0.38 +1.7 604,097 - SO0578 0.42 -0.8 604,123 - SO0578 0.44 +1.0 604,128 - SO0578 0.44 +0.9 604,128 - SO0578 0.44 +0.4 604,194 + SO0578 0.46 +0.7 604,249 + SO0578 0.49 -0.4 604,249 - SO0578 0.49 -0.8 604,257 - SO0578 0.49 -0.2 604,529 - SO0578 0.60 +1.3 604,529 - SO0578 0.60 -0.3 604,573 - SO0578 0.62 -0.2 604,573 - SO0578 0.62 +0.2 604,573 - SO0578 0.62 +0.9 604,641 - SO0578 0.65 +0.1 604,658 + SO0578 0.66 +0.4 604,684 + SO0578 0.67 -1.0 604,685 - SO0578 0.67 +0.5 604,906 + SO0578 0.76 +1.1 604,914 + SO0578 0.76 +1.3 604,914 + SO0578 0.76 +0.1 604,914 + SO0578 0.76 +0.3 604,914 + SO0578 0.76 +1.9 604,922 - SO0578 0.77 -1.9 604,929 + SO0578 0.77 -0.2 604,937 - SO0578 0.77 -0.0 604,966 + SO0578 0.79 +0.5 605,043 + SO0578 0.82 +1.2 605,043 - SO0578 0.82 +0.2 605,144 + SO0578 0.86 +0.4 605,180 - SO0578 0.88 +1.3 605,214 - SO0578 0.89 +0.7 605,254 + +1.1 605,254 + +0.4 605,254 + +0.7 605,254 + -1.3 605,262 - -0.3 605,265 + +0.8 605,290 + +1.1 605,298 - +0.9 605,298 - -0.2 605,313 - +0.8 605,335 + -0.6 605,343 - -0.2 605,388 - +1.2 605,416 + -0.0 605,447 + -1.5 605,455 - -1.1 605,623 + -0.8 605,664 - -1.1 605,670 + -2.2 605,794 - SO0579 0.15 -2.3 605,983 - SO0579 0.25 -2.5 606,005 + SO0579 0.27 -2.2 606,024 + SO0579 0.28 -2.7 606,463 + SO0579 0.52 -1.7
Or see this region's nucleotide sequence