Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0311 and SO0312 are separated by 207 nucleotides SO0312 and potE are separated by 124 nucleotides
SO0311: SO0311 - hypothetical Fe-S oxidoreductase (NCBI ptt file), at 314,976 to 317,336
SO0311
SO0312: SO0312 - outer membrane porin, putative (NCBI ptt file), at 317,544 to 318,698
SO0312
SO0313: potE - putrescine-ornithine antiporter (NCBI ptt file), at 318,823 to 320,142
potE
Position (kb) 317
318
319 Strain fitness (log2 ratio) -1
0
1
2 at 316.653 kb on - strand, within SO0311 at 316.726 kb on + strand, within SO0311 at 316.726 kb on + strand, within SO0311 at 316.734 kb on - strand, within SO0311 at 316.734 kb on - strand, within SO0311 at 316.742 kb on + strand, within SO0311 at 316.750 kb on - strand, within SO0311 at 316.766 kb on + strand, within SO0311 at 316.808 kb on - strand, within SO0311 at 316.820 kb on - strand, within SO0311 at 316.839 kb on - strand, within SO0311 at 316.843 kb on + strand, within SO0311 at 316.952 kb on - strand, within SO0311 at 316.953 kb on + strand, within SO0311 at 317.075 kb on + strand, within SO0311 at 317.106 kb on + strand at 317.189 kb on + strand at 317.189 kb on + strand at 317.189 kb on + strand at 317.197 kb on - strand at 317.243 kb on + strand at 317.243 kb on + strand at 317.253 kb on + strand at 317.256 kb on - strand at 317.258 kb on + strand at 317.261 kb on - strand at 317.266 kb on - strand at 317.281 kb on - strand at 317.286 kb on + strand at 317.294 kb on - strand at 317.309 kb on - strand at 317.335 kb on - strand at 317.390 kb on + strand at 317.490 kb on + strand at 317.498 kb on - strand at 317.498 kb on - strand at 317.574 kb on + strand at 317.574 kb on + strand at 317.652 kb on + strand at 317.683 kb on - strand, within SO0312 at 317.743 kb on + strand, within SO0312 at 317.746 kb on - strand, within SO0312 at 317.753 kb on + strand, within SO0312 at 317.801 kb on + strand, within SO0312 at 317.809 kb on - strand, within SO0312 at 317.830 kb on + strand, within SO0312 at 317.973 kb on - strand, within SO0312 at 317.974 kb on - strand, within SO0312 at 317.976 kb on + strand, within SO0312 at 318.002 kb on + strand, within SO0312 at 318.045 kb on + strand, within SO0312 at 318.045 kb on + strand, within SO0312 at 318.045 kb on + strand, within SO0312 at 318.045 kb on + strand, within SO0312 at 318.045 kb on + strand, within SO0312 at 318.045 kb on + strand, within SO0312 at 318.045 kb on + strand, within SO0312 at 318.045 kb on + strand, within SO0312 at 318.045 kb on + strand, within SO0312 at 318.045 kb on + strand, within SO0312 at 318.045 kb on + strand, within SO0312 at 318.048 kb on - strand, within SO0312 at 318.053 kb on - strand, within SO0312 at 318.053 kb on - strand, within SO0312 at 318.053 kb on - strand, within SO0312 at 318.053 kb on - strand, within SO0312 at 318.053 kb on - strand, within SO0312 at 318.053 kb on - strand, within SO0312 at 318.104 kb on + strand, within SO0312 at 318.159 kb on + strand, within SO0312 at 318.167 kb on - strand, within SO0312 at 318.167 kb on - strand, within SO0312 at 318.209 kb on + strand, within SO0312 at 318.214 kb on + strand, within SO0312 at 318.233 kb on + strand, within SO0312 at 318.240 kb on + strand, within SO0312 at 318.254 kb on + strand, within SO0312 at 318.289 kb on + strand, within SO0312 at 318.289 kb on - strand, within SO0312 at 318.429 kb on - strand, within SO0312 at 318.680 kb on - strand at 318.720 kb on + strand at 318.734 kb on + strand at 318.748 kb on - strand at 318.798 kb on + strand at 318.814 kb on + strand at 318.912 kb on - strand at 318.929 kb on + strand at 318.929 kb on + strand at 318.929 kb on + strand at 318.940 kb on - strand at 319.072 kb on - strand, within potE at 319.092 kb on - strand, within potE at 319.102 kb on + strand, within potE at 319.108 kb on + strand, within potE at 319.220 kb on - strand, within potE at 319.241 kb on + strand, within potE at 319.250 kb on - strand, within potE at 319.324 kb on + strand, within potE at 319.329 kb on + strand, within potE at 319.334 kb on + strand, within potE at 319.337 kb on - strand, within potE at 319.394 kb on - strand, within potE at 319.396 kb on + strand, within potE at 319.398 kb on + strand, within potE at 319.398 kb on + strand, within potE at 319.567 kb on + strand, within potE at 319.575 kb on - strand, within potE at 319.575 kb on - strand, within potE at 319.575 kb on - strand, within potE at 319.575 kb on - strand, within potE at 319.575 kb on - strand, within potE at 319.575 kb on - strand, within potE at 319.575 kb on - strand, within potE at 319.575 kb on - strand, within potE at 319.610 kb on + strand, within potE at 319.610 kb on + strand, within potE at 319.610 kb on + strand, within potE at 319.610 kb on + strand, within potE at 319.618 kb on - strand, within potE at 319.618 kb on - strand, within potE at 319.618 kb on - strand, within potE at 319.618 kb on - strand, within potE at 319.618 kb on - strand, within potE at 319.618 kb on - strand, within potE at 319.620 kb on + strand, within potE at 319.625 kb on + strand, within potE at 319.671 kb on + strand, within potE
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 316,653 - SO0311 0.71 +1.3 316,726 + SO0311 0.74 -0.7 316,726 + SO0311 0.74 +1.6 316,734 - SO0311 0.74 +0.3 316,734 - SO0311 0.74 -1.4 316,742 + SO0311 0.75 -0.3 316,750 - SO0311 0.75 +0.3 316,766 + SO0311 0.76 -1.1 316,808 - SO0311 0.78 -0.6 316,820 - SO0311 0.78 -0.2 316,839 - SO0311 0.79 -0.1 316,843 + SO0311 0.79 +0.8 316,952 - SO0311 0.84 +0.1 316,953 + SO0311 0.84 -0.9 317,075 + SO0311 0.89 -0.3 317,106 + -0.2 317,189 + -1.2 317,189 + -0.2 317,189 + +0.1 317,197 - +1.1 317,243 + +0.2 317,243 + +0.1 317,253 + +0.1 317,256 - +2.3 317,258 + +1.4 317,261 - -0.3 317,266 - -0.6 317,281 - +0.1 317,286 + -1.4 317,294 - +0.3 317,309 - +0.6 317,335 - -0.6 317,390 + +0.6 317,490 + -1.0 317,498 - +0.9 317,498 - +0.7 317,574 + +1.2 317,574 + -0.8 317,652 + -0.8 317,683 - SO0312 0.12 +0.0 317,743 + SO0312 0.17 +0.7 317,746 - SO0312 0.17 +0.8 317,753 + SO0312 0.18 +1.0 317,801 + SO0312 0.22 -0.4 317,809 - SO0312 0.23 +0.7 317,830 + SO0312 0.25 +0.2 317,973 - SO0312 0.37 +1.3 317,974 - SO0312 0.37 -1.5 317,976 + SO0312 0.37 +1.1 318,002 + SO0312 0.40 +0.7 318,045 + SO0312 0.43 -0.8 318,045 + SO0312 0.43 +0.3 318,045 + SO0312 0.43 -1.7 318,045 + SO0312 0.43 +0.4 318,045 + SO0312 0.43 +1.0 318,045 + SO0312 0.43 +1.4 318,045 + SO0312 0.43 -0.3 318,045 + SO0312 0.43 -0.3 318,045 + SO0312 0.43 -0.5 318,045 + SO0312 0.43 +0.8 318,045 + SO0312 0.43 -0.6 318,048 - SO0312 0.44 -0.9 318,053 - SO0312 0.44 +0.4 318,053 - SO0312 0.44 +0.1 318,053 - SO0312 0.44 +0.7 318,053 - SO0312 0.44 +1.3 318,053 - SO0312 0.44 +1.0 318,053 - SO0312 0.44 +0.7 318,104 + SO0312 0.48 -0.5 318,159 + SO0312 0.53 +0.5 318,167 - SO0312 0.54 +0.9 318,167 - SO0312 0.54 +0.4 318,209 + SO0312 0.58 +0.4 318,214 + SO0312 0.58 +0.2 318,233 + SO0312 0.60 -1.0 318,240 + SO0312 0.60 +0.6 318,254 + SO0312 0.61 +0.1 318,289 + SO0312 0.65 +0.4 318,289 - SO0312 0.65 +1.3 318,429 - SO0312 0.77 +1.0 318,680 - +1.1 318,720 + +0.4 318,734 + +1.2 318,748 - -0.7 318,798 + +0.5 318,814 + +0.1 318,912 - +2.3 318,929 + +1.3 318,929 + +0.2 318,929 + +1.1 318,940 - +1.2 319,072 - potE SO0313 0.19 +0.6 319,092 - potE SO0313 0.20 +0.7 319,102 + potE SO0313 0.21 -1.5 319,108 + potE SO0313 0.22 -0.5 319,220 - potE SO0313 0.30 -0.0 319,241 + potE SO0313 0.32 +1.1 319,250 - potE SO0313 0.32 +0.4 319,324 + potE SO0313 0.38 -0.3 319,329 + potE SO0313 0.38 +0.5 319,334 + potE SO0313 0.39 +1.1 319,337 - potE SO0313 0.39 +0.6 319,394 - potE SO0313 0.43 +0.8 319,396 + potE SO0313 0.43 +0.9 319,398 + potE SO0313 0.44 +0.8 319,398 + potE SO0313 0.44 -0.5 319,567 + potE SO0313 0.56 +2.2 319,575 - potE SO0313 0.57 +0.1 319,575 - potE SO0313 0.57 -1.0 319,575 - potE SO0313 0.57 -0.7 319,575 - potE SO0313 0.57 +2.5 319,575 - potE SO0313 0.57 +1.2 319,575 - potE SO0313 0.57 +1.8 319,575 - potE SO0313 0.57 +0.8 319,575 - potE SO0313 0.57 +1.5 319,610 + potE SO0313 0.60 +0.5 319,610 + potE SO0313 0.60 +0.7 319,610 + potE SO0313 0.60 -0.1 319,610 + potE SO0313 0.60 -0.9 319,618 - potE SO0313 0.60 +0.7 319,618 - potE SO0313 0.60 -1.4 319,618 - potE SO0313 0.60 +0.6 319,618 - potE SO0313 0.60 -0.0 319,618 - potE SO0313 0.60 +2.4 319,618 - potE SO0313 0.60 +0.9 319,620 + potE SO0313 0.60 +1.0 319,625 + potE SO0313 0.61 -0.1 319,671 + potE SO0313 0.64 +0.8
Or see this region's nucleotide sequence