Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0091 and Psest_0092 are separated by 11 nucleotides Psest_0092 and Psest_0093 overlap by 4 nucleotides Psest_0093 and Psest_0094 overlap by 4 nucleotides
Psest_0091: Psest_0091 - phosphonate C-P lyase system protein PhnL, at 92,087 to 92,791
_0091
Psest_0092: Psest_0092 - phosphonate C-P lyase system protein PhnK, at 92,803 to 93,615
_0092
Psest_0093: Psest_0093 - Uncharacterized enzyme of phosphonate metabolism, at 93,612 to 94,481
_0093
Psest_0094: Psest_0094 - Uncharacterized enzyme of phosphonate metabolism, at 94,478 to 95,587
_0094
Position (kb)
93
94
95 Strain fitness (log2 ratio)
-1
0
1
2 at 92.620 kb on - strand, within Psest_0091 at 92.838 kb on + strand at 92.839 kb on - strand at 92.839 kb on - strand at 92.840 kb on + strand at 93.386 kb on + strand, within Psest_0092 at 93.715 kb on + strand, within Psest_0093 at 93.715 kb on + strand, within Psest_0093 at 93.715 kb on + strand, within Psest_0093 at 93.809 kb on - strand, within Psest_0093 at 93.809 kb on - strand, within Psest_0093 at 93.923 kb on - strand, within Psest_0093 at 93.952 kb on + strand, within Psest_0093 at 93.953 kb on - strand, within Psest_0093 at 94.096 kb on + strand, within Psest_0093 at 94.096 kb on + strand, within Psest_0093 at 94.096 kb on + strand, within Psest_0093 at 94.444 kb on + strand at 94.444 kb on + strand at 94.584 kb on + strand at 94.584 kb on + strand at 94.584 kb on + strand at 94.584 kb on + strand at 94.585 kb on - strand at 94.585 kb on - strand at 94.585 kb on - strand at 94.585 kb on - strand at 95.217 kb on + strand, within Psest_0094 at 95.217 kb on + strand, within Psest_0094 at 95.218 kb on - strand, within Psest_0094 at 95.218 kb on - strand, within Psest_0094 at 95.218 kb on - strand, within Psest_0094
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 92,620 - Psest_0091 0.76 +1.0 92,838 + +0.3 92,839 - +0.0 92,839 - +1.0 92,840 + +1.0 93,386 + Psest_0092 0.72 +0.2 93,715 + Psest_0093 0.12 -0.5 93,715 + Psest_0093 0.12 +0.0 93,715 + Psest_0093 0.12 +2.3 93,809 - Psest_0093 0.23 -0.3 93,809 - Psest_0093 0.23 +2.3 93,923 - Psest_0093 0.36 +2.3 93,952 + Psest_0093 0.39 +0.3 93,953 - Psest_0093 0.39 -0.5 94,096 + Psest_0093 0.56 +2.3 94,096 + Psest_0093 0.56 +0.7 94,096 + Psest_0093 0.56 +2.3 94,444 + +0.6 94,444 + +1.3 94,584 + +0.3 94,584 + +0.7 94,584 + +1.9 94,584 + +1.3 94,585 - +0.0 94,585 - +0.3 94,585 - +0.3 94,585 - +0.3 95,217 + Psest_0094 0.67 +0.3 95,217 + Psest_0094 0.67 +0.3 95,218 - Psest_0094 0.67 +0.2 95,218 - Psest_0094 0.67 +1.3 95,218 - Psest_0094 0.67 +1.1
Or see this region's nucleotide sequence