Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0069

Experiment: Def Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0067 and Psest_0068 are separated by 101 nucleotidesPsest_0068 and Psest_0069 are separated by 79 nucleotidesPsest_0069 and Psest_0070 are separated by 419 nucleotides Psest_0067: Psest_0067 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 67,502 to 68,500 _0067 Psest_0068: Psest_0068 - Amidases related to nicotinamidase, at 68,602 to 69,156 _0068 Psest_0069: Psest_0069 - UDP-glucose-4-epimerase, at 69,236 to 70,300 _0069 Psest_0070: Psest_0070 - Glycosyltransferase, at 70,720 to 71,904 _0070 Position (kb) 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.519 kb on - strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.645 kb on - strandat 68.645 kb on - strandat 69.136 kb on + strandat 69.136 kb on + strandat 69.210 kb on + strandat 69.210 kb on + strandat 69.210 kb on + strandat 69.606 kb on + strand, within Psest_0069at 69.607 kb on - strand, within Psest_0069at 69.607 kb on - strand, within Psest_0069at 69.607 kb on - strand, within Psest_0069at 69.607 kb on - strand, within Psest_0069at 69.607 kb on - strand, within Psest_0069at 69.607 kb on - strand, within Psest_0069at 69.651 kb on + strand, within Psest_0069at 69.651 kb on + strand, within Psest_0069at 69.652 kb on - strand, within Psest_0069at 69.670 kb on + strand, within Psest_0069at 69.670 kb on + strand, within Psest_0069at 69.670 kb on + strand, within Psest_0069at 69.671 kb on - strand, within Psest_0069at 69.696 kb on + strand, within Psest_0069at 69.696 kb on + strand, within Psest_0069at 69.697 kb on - strand, within Psest_0069at 69.697 kb on - strand, within Psest_0069at 69.775 kb on - strand, within Psest_0069at 69.775 kb on - strand, within Psest_0069at 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.272 kb on + strandat 70.272 kb on + strandat 70.272 kb on + strandat 70.273 kb on - strandat 70.273 kb on - strandat 70.273 kb on - strandat 70.273 kb on - strandat 70.306 kb on + strandat 70.306 kb on + strandat 70.307 kb on - strandat 70.383 kb on - strandat 70.451 kb on - strandat 70.503 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.745 kb on - strandat 70.894 kb on + strand, within Psest_0070at 70.894 kb on + strand, within Psest_0070at 70.894 kb on + strand, within Psest_0070at 70.894 kb on + strand, within Psest_0070at 70.895 kb on - strand, within Psest_0070at 70.895 kb on - strand, within Psest_0070at 70.895 kb on - strand, within Psest_0070at 70.895 kb on - strand, within Psest_0070at 71.056 kb on + strand, within Psest_0070at 71.098 kb on + strand, within Psest_0070at 71.098 kb on + strand, within Psest_0070at 71.098 kb on + strand, within Psest_0070at 71.099 kb on - strand, within Psest_0070at 71.099 kb on - strand, within Psest_0070at 71.099 kb on - strand, within Psest_0070at 71.099 kb on - strand, within Psest_0070at 71.152 kb on + strand, within Psest_0070at 71.152 kb on + strand, within Psest_0070at 71.152 kb on + strand, within Psest_0070at 71.152 kb on + strand, within Psest_0070at 71.153 kb on - strand, within Psest_0070at 71.267 kb on - strand, within Psest_0070at 71.267 kb on - strand, within Psest_0070

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 20 mM
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68,519 - -0.7
68,559 + +0.7
68,559 + +0.5
68,559 + -0.3
68,559 + -0.6
68,559 + +0.5
68,559 + -0.6
68,559 + -3.1
68,559 + +0.4
68,559 + -0.7
68,559 + +1.1
68,559 + -0.6
68,559 + +0.6
68,559 + +0.2
68,559 + +0.1
68,559 + -0.4
68,560 - -0.3
68,560 - -1.7
68,560 - +1.0
68,560 - -0.1
68,560 - -3.6
68,560 - -0.5
68,560 - -1.4
68,560 - +0.7
68,560 - +0.0
68,560 - -1.1
68,560 - +0.4
68,560 - +0.7
68,560 - +0.3
68,560 - +1.3
68,560 - -0.4
68,560 - -1.1
68,645 - -0.8
68,645 - -0.8
69,136 + +0.1
69,136 + +1.0
69,210 + -1.7
69,210 + +0.1
69,210 + +0.7
69,606 + Psest_0069 0.35 +0.4
69,607 - Psest_0069 0.35 -1.0
69,607 - Psest_0069 0.35 +0.5
69,607 - Psest_0069 0.35 -0.5
69,607 - Psest_0069 0.35 +0.7
69,607 - Psest_0069 0.35 -0.7
69,607 - Psest_0069 0.35 -0.2
69,651 + Psest_0069 0.39 +0.1
69,651 + Psest_0069 0.39 +0.1
69,652 - Psest_0069 0.39 -0.4
69,670 + Psest_0069 0.41 -0.9
69,670 + Psest_0069 0.41 -0.1
69,670 + Psest_0069 0.41 -0.8
69,671 - Psest_0069 0.41 -1.1
69,696 + Psest_0069 0.43 +2.3
69,696 + Psest_0069 0.43 +0.3
69,697 - Psest_0069 0.43 +0.7
69,697 - Psest_0069 0.43 +0.0
69,775 - Psest_0069 0.51 +1.3
69,775 - Psest_0069 0.51 -1.6
70,268 + -0.6
70,268 + -0.4
70,268 + -0.9
70,268 + -0.8
70,268 + -0.3
70,268 + -0.8
70,268 + -0.5
70,268 + -0.2
70,268 + -1.1
70,268 + -0.3
70,268 + -0.8
70,268 + -0.9
70,269 - -1.1
70,269 - -0.2
70,269 - -0.9
70,269 - +1.3
70,269 - +0.0
70,269 - +1.0
70,269 - +0.8
70,269 - +1.1
70,269 - +1.2
70,269 - +0.4
70,269 - +0.6
70,269 - +1.3
70,269 - +0.4
70,269 - +0.7
70,269 - +0.3
70,272 + -0.5
70,272 + +1.0
70,272 + +0.2
70,273 - +0.6
70,273 - -1.2
70,273 - +0.1
70,273 - -1.3
70,306 + +0.5
70,306 + -1.1
70,307 - -0.5
70,383 - +1.5
70,451 - -0.7
70,503 + +0.3
70,717 + +0.0
70,717 + -0.8
70,717 + -0.2
70,717 + +1.3
70,717 + -0.3
70,717 + +0.5
70,717 + +0.3
70,717 + -0.7
70,717 + -0.1
70,718 - +0.6
70,718 - -0.8
70,718 - -0.6
70,718 - +0.6
70,718 - +1.0
70,718 - -0.7
70,718 - +2.0
70,718 - +0.1
70,718 - -1.9
70,745 - +0.1
70,894 + Psest_0070 0.15 +0.5
70,894 + Psest_0070 0.15 +0.7
70,894 + Psest_0070 0.15 -0.4
70,894 + Psest_0070 0.15 -0.3
70,895 - Psest_0070 0.15 +0.3
70,895 - Psest_0070 0.15 -2.2
70,895 - Psest_0070 0.15 -0.1
70,895 - Psest_0070 0.15 -0.8
71,056 + Psest_0070 0.28 -0.6
71,098 + Psest_0070 0.32 -0.3
71,098 + Psest_0070 0.32 +0.1
71,098 + Psest_0070 0.32 +1.5
71,099 - Psest_0070 0.32 +0.4
71,099 - Psest_0070 0.32 -0.3
71,099 - Psest_0070 0.32 +0.3
71,099 - Psest_0070 0.32 +0.2
71,152 + Psest_0070 0.36 -0.1
71,152 + Psest_0070 0.36 +0.1
71,152 + Psest_0070 0.36 +1.3
71,152 + Psest_0070 0.36 -1.8
71,153 - Psest_0070 0.37 -0.2
71,267 - Psest_0070 0.46 +2.2
71,267 - Psest_0070 0.46 -1.4

Or see this region's nucleotide sequence