Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0067 and Psest_0068 are separated by 101 nucleotides Psest_0068 and Psest_0069 are separated by 79 nucleotides Psest_0069 and Psest_0070 are separated by 419 nucleotides
Psest_0067: Psest_0067 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 67,502 to 68,500
_0067
Psest_0068: Psest_0068 - Amidases related to nicotinamidase, at 68,602 to 69,156
_0068
Psest_0069: Psest_0069 - UDP-glucose-4-epimerase, at 69,236 to 70,300
_0069
Psest_0070: Psest_0070 - Glycosyltransferase, at 70,720 to 71,904
_0070
Position (kb)
69
70
71 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 68.519 kb on - strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.645 kb on - strand at 68.645 kb on - strand at 69.136 kb on + strand at 69.136 kb on + strand at 69.210 kb on + strand at 69.210 kb on + strand at 69.210 kb on + strand at 69.606 kb on + strand, within Psest_0069 at 69.607 kb on - strand, within Psest_0069 at 69.607 kb on - strand, within Psest_0069 at 69.607 kb on - strand, within Psest_0069 at 69.607 kb on - strand, within Psest_0069 at 69.607 kb on - strand, within Psest_0069 at 69.607 kb on - strand, within Psest_0069 at 69.651 kb on + strand, within Psest_0069 at 69.651 kb on + strand, within Psest_0069 at 69.652 kb on - strand, within Psest_0069 at 69.670 kb on + strand, within Psest_0069 at 69.670 kb on + strand, within Psest_0069 at 69.670 kb on + strand, within Psest_0069 at 69.671 kb on - strand, within Psest_0069 at 69.696 kb on + strand, within Psest_0069 at 69.696 kb on + strand, within Psest_0069 at 69.697 kb on - strand, within Psest_0069 at 69.697 kb on - strand, within Psest_0069 at 69.775 kb on - strand, within Psest_0069 at 69.775 kb on - strand, within Psest_0069 at 70.268 kb on + strand at 70.268 kb on + strand at 70.268 kb on + strand at 70.268 kb on + strand at 70.268 kb on + strand at 70.268 kb on + strand at 70.268 kb on + strand at 70.268 kb on + strand at 70.268 kb on + strand at 70.268 kb on + strand at 70.268 kb on + strand at 70.268 kb on + strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.269 kb on - strand at 70.272 kb on + strand at 70.272 kb on + strand at 70.272 kb on + strand at 70.273 kb on - strand at 70.273 kb on - strand at 70.273 kb on - strand at 70.273 kb on - strand at 70.306 kb on + strand at 70.306 kb on + strand at 70.307 kb on - strand at 70.383 kb on - strand at 70.451 kb on - strand at 70.503 kb on + strand at 70.717 kb on + strand at 70.717 kb on + strand at 70.717 kb on + strand at 70.717 kb on + strand at 70.717 kb on + strand at 70.717 kb on + strand at 70.717 kb on + strand at 70.717 kb on + strand at 70.717 kb on + strand at 70.718 kb on - strand at 70.718 kb on - strand at 70.718 kb on - strand at 70.718 kb on - strand at 70.718 kb on - strand at 70.718 kb on - strand at 70.718 kb on - strand at 70.718 kb on - strand at 70.718 kb on - strand at 70.745 kb on - strand at 70.894 kb on + strand, within Psest_0070 at 70.894 kb on + strand, within Psest_0070 at 70.894 kb on + strand, within Psest_0070 at 70.894 kb on + strand, within Psest_0070 at 70.895 kb on - strand, within Psest_0070 at 70.895 kb on - strand, within Psest_0070 at 70.895 kb on - strand, within Psest_0070 at 70.895 kb on - strand, within Psest_0070 at 71.056 kb on + strand, within Psest_0070 at 71.098 kb on + strand, within Psest_0070 at 71.098 kb on + strand, within Psest_0070 at 71.098 kb on + strand, within Psest_0070 at 71.099 kb on - strand, within Psest_0070 at 71.099 kb on - strand, within Psest_0070 at 71.099 kb on - strand, within Psest_0070 at 71.099 kb on - strand, within Psest_0070 at 71.152 kb on + strand, within Psest_0070 at 71.152 kb on + strand, within Psest_0070 at 71.152 kb on + strand, within Psest_0070 at 71.152 kb on + strand, within Psest_0070 at 71.153 kb on - strand, within Psest_0070 at 71.267 kb on - strand, within Psest_0070 at 71.267 kb on - strand, within Psest_0070
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 68,519 - -0.7 68,559 + +0.7 68,559 + +0.5 68,559 + -0.3 68,559 + -0.6 68,559 + +0.5 68,559 + -0.6 68,559 + -3.1 68,559 + +0.4 68,559 + -0.7 68,559 + +1.1 68,559 + -0.6 68,559 + +0.6 68,559 + +0.2 68,559 + +0.1 68,559 + -0.4 68,560 - -0.3 68,560 - -1.7 68,560 - +1.0 68,560 - -0.1 68,560 - -3.6 68,560 - -0.5 68,560 - -1.4 68,560 - +0.7 68,560 - +0.0 68,560 - -1.1 68,560 - +0.4 68,560 - +0.7 68,560 - +0.3 68,560 - +1.3 68,560 - -0.4 68,560 - -1.1 68,645 - -0.8 68,645 - -0.8 69,136 + +0.1 69,136 + +1.0 69,210 + -1.7 69,210 + +0.1 69,210 + +0.7 69,606 + Psest_0069 0.35 +0.4 69,607 - Psest_0069 0.35 -1.0 69,607 - Psest_0069 0.35 +0.5 69,607 - Psest_0069 0.35 -0.5 69,607 - Psest_0069 0.35 +0.7 69,607 - Psest_0069 0.35 -0.7 69,607 - Psest_0069 0.35 -0.2 69,651 + Psest_0069 0.39 +0.1 69,651 + Psest_0069 0.39 +0.1 69,652 - Psest_0069 0.39 -0.4 69,670 + Psest_0069 0.41 -0.9 69,670 + Psest_0069 0.41 -0.1 69,670 + Psest_0069 0.41 -0.8 69,671 - Psest_0069 0.41 -1.1 69,696 + Psest_0069 0.43 +2.3 69,696 + Psest_0069 0.43 +0.3 69,697 - Psest_0069 0.43 +0.7 69,697 - Psest_0069 0.43 +0.0 69,775 - Psest_0069 0.51 +1.3 69,775 - Psest_0069 0.51 -1.6 70,268 + -0.6 70,268 + -0.4 70,268 + -0.9 70,268 + -0.8 70,268 + -0.3 70,268 + -0.8 70,268 + -0.5 70,268 + -0.2 70,268 + -1.1 70,268 + -0.3 70,268 + -0.8 70,268 + -0.9 70,269 - -1.1 70,269 - -0.2 70,269 - -0.9 70,269 - +1.3 70,269 - +0.0 70,269 - +1.0 70,269 - +0.8 70,269 - +1.1 70,269 - +1.2 70,269 - +0.4 70,269 - +0.6 70,269 - +1.3 70,269 - +0.4 70,269 - +0.7 70,269 - +0.3 70,272 + -0.5 70,272 + +1.0 70,272 + +0.2 70,273 - +0.6 70,273 - -1.2 70,273 - +0.1 70,273 - -1.3 70,306 + +0.5 70,306 + -1.1 70,307 - -0.5 70,383 - +1.5 70,451 - -0.7 70,503 + +0.3 70,717 + +0.0 70,717 + -0.8 70,717 + -0.2 70,717 + +1.3 70,717 + -0.3 70,717 + +0.5 70,717 + +0.3 70,717 + -0.7 70,717 + -0.1 70,718 - +0.6 70,718 - -0.8 70,718 - -0.6 70,718 - +0.6 70,718 - +1.0 70,718 - -0.7 70,718 - +2.0 70,718 - +0.1 70,718 - -1.9 70,745 - +0.1 70,894 + Psest_0070 0.15 +0.5 70,894 + Psest_0070 0.15 +0.7 70,894 + Psest_0070 0.15 -0.4 70,894 + Psest_0070 0.15 -0.3 70,895 - Psest_0070 0.15 +0.3 70,895 - Psest_0070 0.15 -2.2 70,895 - Psest_0070 0.15 -0.1 70,895 - Psest_0070 0.15 -0.8 71,056 + Psest_0070 0.28 -0.6 71,098 + Psest_0070 0.32 -0.3 71,098 + Psest_0070 0.32 +0.1 71,098 + Psest_0070 0.32 +1.5 71,099 - Psest_0070 0.32 +0.4 71,099 - Psest_0070 0.32 -0.3 71,099 - Psest_0070 0.32 +0.3 71,099 - Psest_0070 0.32 +0.2 71,152 + Psest_0070 0.36 -0.1 71,152 + Psest_0070 0.36 +0.1 71,152 + Psest_0070 0.36 +1.3 71,152 + Psest_0070 0.36 -1.8 71,153 - Psest_0070 0.37 -0.2 71,267 - Psest_0070 0.46 +2.2 71,267 - Psest_0070 0.46 -1.4
Or see this region's nucleotide sequence