Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0500 and Psest_0501 are separated by 186 nucleotides Psest_0501 and Psest_0502 are separated by 19 nucleotides Psest_0502 and Psest_0503 are separated by 77 nucleotides Psest_0503 and Psest_0504 are separated by 225 nucleotides
Psest_0500: Psest_0500 - Oligoribonuclease (3'->5' exoribonuclease), at 554,917 to 555,459
_0500
Psest_0501: Psest_0501 - Predicted nucleoside-diphosphate-sugar epimerases, at 555,646 to 556,287
_0501
Psest_0502: Psest_0502 - Uncharacterized protein conserved in bacteria, at 556,307 to 557,980
_0502
Psest_0503: Psest_0503 - Acyl dehydratase, at 558,058 to 558,513
_0503
Psest_0504: Psest_0504 - Putative effector of murein hydrolase LrgA, at 558,739 to 559,101
_0504
Position (kb) 556
557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.560 kb on + strand at 555.560 kb on + strand at 555.560 kb on + strand at 555.560 kb on + strand at 555.561 kb on - strand at 555.561 kb on - strand at 555.561 kb on - strand at 555.758 kb on + strand, within Psest_0501 at 555.758 kb on + strand, within Psest_0501 at 555.759 kb on - strand, within Psest_0501 at 555.914 kb on + strand, within Psest_0501 at 555.914 kb on + strand, within Psest_0501 at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.393 kb on - strand at 556.393 kb on - strand at 556.500 kb on + strand, within Psest_0502 at 556.500 kb on + strand, within Psest_0502 at 556.501 kb on - strand, within Psest_0502 at 556.501 kb on - strand, within Psest_0502 at 556.501 kb on - strand, within Psest_0502 at 556.501 kb on - strand, within Psest_0502 at 556.608 kb on + strand, within Psest_0502 at 556.625 kb on + strand, within Psest_0502 at 556.626 kb on - strand, within Psest_0502 at 556.626 kb on - strand, within Psest_0502 at 556.626 kb on - strand, within Psest_0502 at 556.716 kb on - strand, within Psest_0502 at 556.752 kb on + strand, within Psest_0502 at 556.753 kb on - strand, within Psest_0502 at 556.905 kb on - strand, within Psest_0502 at 556.917 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.973 kb on - strand, within Psest_0502 at 556.973 kb on - strand, within Psest_0502 at 556.973 kb on - strand, within Psest_0502 at 556.974 kb on + strand, within Psest_0502 at 556.974 kb on + strand, within Psest_0502 at 556.974 kb on + strand, within Psest_0502 at 556.974 kb on + strand, within Psest_0502 at 556.974 kb on + strand, within Psest_0502 at 556.975 kb on - strand, within Psest_0502 at 556.975 kb on - strand, within Psest_0502 at 556.975 kb on - strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.194 kb on - strand, within Psest_0502 at 557.194 kb on - strand, within Psest_0502 at 557.194 kb on - strand, within Psest_0502 at 557.194 kb on - strand, within Psest_0502 at 557.194 kb on - strand, within Psest_0502 at 557.194 kb on - strand, within Psest_0502 at 557.235 kb on + strand, within Psest_0502 at 557.262 kb on + strand, within Psest_0502 at 557.263 kb on - strand, within Psest_0502 at 557.553 kb on + strand, within Psest_0502 at 557.553 kb on + strand, within Psest_0502 at 557.554 kb on - strand, within Psest_0502 at 557.577 kb on + strand, within Psest_0502 at 557.577 kb on + strand, within Psest_0502 at 557.577 kb on + strand, within Psest_0502 at 557.578 kb on - strand, within Psest_0502 at 557.578 kb on - strand, within Psest_0502 at 557.578 kb on - strand, within Psest_0502 at 557.604 kb on + strand, within Psest_0502 at 557.605 kb on - strand, within Psest_0502 at 557.671 kb on - strand, within Psest_0502 at 557.689 kb on - strand, within Psest_0502 at 557.809 kb on - strand, within Psest_0502 at 557.809 kb on - strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.812 kb on - strand, within Psest_0502 at 557.812 kb on - strand, within Psest_0502 at 557.812 kb on - strand, within Psest_0502 at 557.812 kb on - strand, within Psest_0502 at 557.812 kb on - strand, within Psest_0502 at 557.812 kb on - strand, within Psest_0502 at 558.012 kb on + strand at 558.013 kb on - strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.093 kb on - strand at 558.196 kb on + strand, within Psest_0503 at 558.268 kb on - strand, within Psest_0503 at 558.480 kb on - strand at 558.480 kb on - strand at 558.480 kb on - strand at 558.480 kb on - strand at 558.535 kb on + strand at 558.535 kb on + strand at 558.536 kb on - strand at 558.536 kb on - strand at 558.536 kb on - strand at 558.562 kb on - strand at 558.617 kb on - strand at 558.617 kb on - strand at 558.617 kb on - strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.920 kb on - strand, within Psest_0504 at 558.964 kb on + strand, within Psest_0504 at 558.964 kb on + strand, within Psest_0504 at 558.965 kb on - strand, within Psest_0504 at 558.965 kb on - strand, within Psest_0504 at 558.966 kb on + strand, within Psest_0504 at 558.966 kb on + strand, within Psest_0504 at 558.966 kb on + strand, within Psest_0504 at 558.967 kb on - strand, within Psest_0504
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 555,541 + -0.6 555,541 + -0.2 555,541 + +2.7 555,541 + +0.0 555,541 + -0.9 555,541 + -1.2 555,541 + -0.2 555,541 + -0.4 555,541 + -0.2 555,542 - -1.3 555,542 - +0.2 555,542 - -1.4 555,542 - +0.4 555,542 - -2.0 555,542 - +0.6 555,542 - +1.5 555,560 + -1.2 555,560 + -0.7 555,560 + +0.4 555,560 + -0.3 555,561 - -0.3 555,561 - -1.0 555,561 - +2.0 555,758 + Psest_0501 0.17 -0.3 555,758 + Psest_0501 0.17 +1.9 555,759 - Psest_0501 0.18 +0.5 555,914 + Psest_0501 0.42 -1.8 555,914 + Psest_0501 0.42 +0.2 556,283 + -0.9 556,283 + +0.2 556,283 + +0.2 556,283 + +0.4 556,283 + -0.0 556,283 + -0.3 556,283 + -0.4 556,283 + -1.5 556,283 + +0.3 556,284 - -0.9 556,284 - -1.1 556,284 - -3.0 556,284 - -0.9 556,284 - +0.2 556,284 - -1.1 556,284 - -0.9 556,284 - -0.4 556,284 - -0.3 556,284 - -0.2 556,284 - +0.2 556,284 - -0.4 556,284 - -1.2 556,284 - -1.5 556,284 - -1.0 556,284 - +0.0 556,284 - +0.5 556,284 - -0.4 556,284 - +1.2 556,284 - -0.5 556,284 - -1.5 556,284 - +0.5 556,284 - -0.5 556,284 - +0.2 556,284 - -0.3 556,284 - -0.5 556,284 - +0.2 556,393 - +0.2 556,393 - -0.6 556,500 + Psest_0502 0.12 -0.8 556,500 + Psest_0502 0.12 -1.5 556,501 - Psest_0502 0.12 -0.6 556,501 - Psest_0502 0.12 -0.8 556,501 - Psest_0502 0.12 +0.1 556,501 - Psest_0502 0.12 -0.3 556,608 + Psest_0502 0.18 -0.6 556,625 + Psest_0502 0.19 +3.2 556,626 - Psest_0502 0.19 -0.4 556,626 - Psest_0502 0.19 +1.2 556,626 - Psest_0502 0.19 +0.2 556,716 - Psest_0502 0.24 +0.6 556,752 + Psest_0502 0.27 -0.9 556,753 - Psest_0502 0.27 -0.3 556,905 - Psest_0502 0.36 -0.6 556,917 + Psest_0502 0.36 -0.4 556,972 + Psest_0502 0.40 -1.7 556,972 + Psest_0502 0.40 +0.5 556,972 + Psest_0502 0.40 -0.8 556,972 + Psest_0502 0.40 +0.5 556,972 + Psest_0502 0.40 -1.8 556,972 + Psest_0502 0.40 +1.0 556,972 + Psest_0502 0.40 -2.4 556,973 - Psest_0502 0.40 -0.2 556,973 - Psest_0502 0.40 +0.0 556,973 - Psest_0502 0.40 -0.9 556,974 + Psest_0502 0.40 -1.8 556,974 + Psest_0502 0.40 +0.2 556,974 + Psest_0502 0.40 +0.2 556,974 + Psest_0502 0.40 -0.6 556,974 + Psest_0502 0.40 +1.2 556,975 - Psest_0502 0.40 -0.9 556,975 - Psest_0502 0.40 -1.5 556,975 - Psest_0502 0.40 -1.1 557,193 + Psest_0502 0.53 +0.8 557,193 + Psest_0502 0.53 +0.6 557,193 + Psest_0502 0.53 -1.3 557,193 + Psest_0502 0.53 -1.0 557,193 + Psest_0502 0.53 -1.4 557,193 + Psest_0502 0.53 +0.7 557,193 + Psest_0502 0.53 +1.7 557,194 - Psest_0502 0.53 +1.8 557,194 - Psest_0502 0.53 -0.5 557,194 - Psest_0502 0.53 -0.9 557,194 - Psest_0502 0.53 -0.3 557,194 - Psest_0502 0.53 +0.4 557,194 - Psest_0502 0.53 +1.8 557,235 + Psest_0502 0.55 +1.6 557,262 + Psest_0502 0.57 +0.7 557,263 - Psest_0502 0.57 -0.2 557,553 + Psest_0502 0.74 +2.2 557,553 + Psest_0502 0.74 -0.8 557,554 - Psest_0502 0.74 -1.3 557,577 + Psest_0502 0.76 -0.3 557,577 + Psest_0502 0.76 -0.1 557,577 + Psest_0502 0.76 +1.6 557,578 - Psest_0502 0.76 +0.6 557,578 - Psest_0502 0.76 -0.2 557,578 - Psest_0502 0.76 -0.7 557,604 + Psest_0502 0.77 -1.2 557,605 - Psest_0502 0.78 -1.0 557,671 - Psest_0502 0.81 -2.4 557,689 - Psest_0502 0.83 -0.6 557,809 - Psest_0502 0.90 -0.1 557,809 - Psest_0502 0.90 -1.5 557,811 + Psest_0502 0.90 +0.2 557,811 + Psest_0502 0.90 +0.0 557,811 + Psest_0502 0.90 +0.7 557,811 + Psest_0502 0.90 -2.4 557,811 + Psest_0502 0.90 +1.2 557,811 + Psest_0502 0.90 +0.0 557,811 + Psest_0502 0.90 -2.7 557,811 + Psest_0502 0.90 -0.4 557,811 + Psest_0502 0.90 -1.9 557,812 - Psest_0502 0.90 -2.5 557,812 - Psest_0502 0.90 -0.7 557,812 - Psest_0502 0.90 +1.5 557,812 - Psest_0502 0.90 -1.0 557,812 - Psest_0502 0.90 -1.0 557,812 - Psest_0502 0.90 -1.7 558,012 + -0.3 558,013 - -0.3 558,092 + +0.6 558,092 + +0.2 558,092 + -0.2 558,093 - -0.1 558,196 + Psest_0503 0.30 -0.6 558,268 - Psest_0503 0.46 -2.1 558,480 - +0.0 558,480 - -0.5 558,480 - +0.9 558,480 - +0.2 558,535 + -1.7 558,535 + +0.4 558,536 - -0.3 558,536 - -1.9 558,536 - -1.8 558,562 - -2.2 558,617 - -0.2 558,617 - -0.9 558,617 - -1.4 558,711 + -0.2 558,711 + -0.4 558,711 + +3.2 558,711 + -1.7 558,711 + -1.0 558,711 + -2.2 558,711 + -0.4 558,711 + -0.3 558,711 + -1.0 558,711 + +0.2 558,712 - -0.0 558,712 - -0.1 558,712 - +2.6 558,712 - +0.2 558,712 - -1.0 558,712 - +0.6 558,712 - +0.8 558,920 - Psest_0504 0.50 -0.9 558,964 + Psest_0504 0.62 -0.4 558,964 + Psest_0504 0.62 +1.6 558,965 - Psest_0504 0.62 +0.0 558,965 - Psest_0504 0.62 +0.2 558,966 + Psest_0504 0.63 -0.9 558,966 + Psest_0504 0.63 +0.8 558,966 + Psest_0504 0.63 +2.4 558,967 - Psest_0504 0.63 +1.5
Or see this region's nucleotide sequence