Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0434 and Psest_0435 are separated by 77 nucleotides Psest_0435 and Psest_0436 are separated by 259 nucleotides Psest_0436 and Psest_0437 are separated by 77 nucleotides Psest_0437 and Psest_0438 are separated by 235 nucleotides
Psest_0434: Psest_0434 - hypothetical protein, at 471,134 to 471,760
_0434
Psest_0435: Psest_0435 - Predicted transcriptional regulators, at 471,838 to 472,134
_0435
Psest_0436: Psest_0436 - hypothetical protein, at 472,394 to 472,648
_0436
Psest_0437: Psest_0437 - hypothetical protein, at 472,726 to 472,956
_0437
Psest_0438: Psest_0438 - NACHT domain., at 473,192 to 477,613
_0438
Position (kb) 472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 471.395 kb on - strand, within Psest_0434 at 471.395 kb on - strand, within Psest_0434 at 471.395 kb on - strand, within Psest_0434 at 471.429 kb on + strand, within Psest_0434 at 471.430 kb on - strand, within Psest_0434 at 471.443 kb on + strand, within Psest_0434 at 471.443 kb on + strand, within Psest_0434 at 471.444 kb on - strand, within Psest_0434 at 471.444 kb on - strand, within Psest_0434 at 471.444 kb on - strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.521 kb on - strand, within Psest_0434 at 471.551 kb on - strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.555 kb on - strand, within Psest_0434 at 471.574 kb on - strand, within Psest_0434 at 471.597 kb on + strand, within Psest_0434 at 471.597 kb on + strand, within Psest_0434 at 471.598 kb on - strand, within Psest_0434 at 471.598 kb on - strand, within Psest_0434 at 471.598 kb on - strand, within Psest_0434 at 471.799 kb on + strand at 471.800 kb on - strand at 471.839 kb on + strand at 471.839 kb on + strand at 471.839 kb on + strand at 471.839 kb on + strand at 471.840 kb on - strand at 471.840 kb on - strand at 471.840 kb on - strand at 471.868 kb on + strand, within Psest_0435 at 471.869 kb on - strand, within Psest_0435 at 471.889 kb on + strand, within Psest_0435 at 471.890 kb on - strand, within Psest_0435 at 471.895 kb on + strand, within Psest_0435 at 471.896 kb on - strand, within Psest_0435 at 471.896 kb on - strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.933 kb on - strand, within Psest_0435 at 471.933 kb on - strand, within Psest_0435 at 471.933 kb on - strand, within Psest_0435 at 471.933 kb on - strand, within Psest_0435 at 472.002 kb on + strand, within Psest_0435 at 472.002 kb on + strand, within Psest_0435 at 472.002 kb on + strand, within Psest_0435 at 472.002 kb on + strand, within Psest_0435 at 472.012 kb on - strand, within Psest_0435 at 472.037 kb on + strand, within Psest_0435 at 472.037 kb on + strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.075 kb on - strand, within Psest_0435 at 472.111 kb on - strand at 472.316 kb on - strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.347 kb on - strand at 472.347 kb on - strand at 472.395 kb on + strand at 472.413 kb on + strand at 472.414 kb on - strand at 472.431 kb on + strand, within Psest_0436 at 472.431 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.438 kb on - strand, within Psest_0436 at 472.438 kb on - strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.577 kb on + strand, within Psest_0436 at 472.602 kb on - strand, within Psest_0436 at 472.705 kb on + strand at 472.705 kb on + strand at 472.705 kb on + strand at 472.705 kb on + strand at 472.706 kb on - strand at 472.706 kb on - strand at 472.706 kb on - strand at 472.706 kb on - strand at 472.760 kb on + strand, within Psest_0437 at 472.760 kb on + strand, within Psest_0437 at 472.761 kb on - strand, within Psest_0437 at 472.761 kb on - strand, within Psest_0437 at 472.872 kb on + strand, within Psest_0437 at 472.932 kb on - strand, within Psest_0437 at 472.932 kb on - strand, within Psest_0437 at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.958 kb on - strand at 472.958 kb on - strand at 472.958 kb on - strand at 472.958 kb on - strand at 472.961 kb on + strand at 472.992 kb on + strand at 472.992 kb on + strand at 472.992 kb on + strand at 472.992 kb on + strand at 472.993 kb on - strand at 473.016 kb on + strand at 473.017 kb on - strand at 473.029 kb on + strand at 473.029 kb on + strand at 473.029 kb on + strand at 473.029 kb on + strand at 473.070 kb on + strand at 473.070 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.112 kb on - strand at 473.112 kb on - strand at 473.112 kb on - strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.234 kb on + strand at 473.234 kb on + strand at 473.234 kb on + strand at 473.235 kb on - strand at 473.235 kb on - strand at 473.240 kb on + strand at 473.240 kb on + strand at 473.240 kb on + strand at 473.298 kb on - strand at 473.298 kb on - strand at 473.298 kb on - strand at 473.541 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 471,395 - Psest_0434 0.42 -0.0 471,395 - Psest_0434 0.42 +0.6 471,395 - Psest_0434 0.42 -0.1 471,429 + Psest_0434 0.47 -1.7 471,430 - Psest_0434 0.47 +1.1 471,443 + Psest_0434 0.49 -0.6 471,443 + Psest_0434 0.49 +0.5 471,444 - Psest_0434 0.49 -3.5 471,444 - Psest_0434 0.49 +0.3 471,444 - Psest_0434 0.49 +0.1 471,460 + Psest_0434 0.52 -0.8 471,460 + Psest_0434 0.52 +1.1 471,460 + Psest_0434 0.52 +0.2 471,460 + Psest_0434 0.52 +0.7 471,460 + Psest_0434 0.52 -0.5 471,460 + Psest_0434 0.52 +0.2 471,460 + Psest_0434 0.52 +2.1 471,461 - Psest_0434 0.52 -0.0 471,461 - Psest_0434 0.52 -0.2 471,461 - Psest_0434 0.52 +1.1 471,461 - Psest_0434 0.52 +0.1 471,461 - Psest_0434 0.52 +1.8 471,461 - Psest_0434 0.52 -1.1 471,461 - Psest_0434 0.52 +0.8 471,494 + Psest_0434 0.57 +0.7 471,494 + Psest_0434 0.57 +0.2 471,494 + Psest_0434 0.57 -1.5 471,494 + Psest_0434 0.57 +1.1 471,494 + Psest_0434 0.57 -0.3 471,494 + Psest_0434 0.57 +1.1 471,494 + Psest_0434 0.57 -0.1 471,494 + Psest_0434 0.57 -0.6 471,494 + Psest_0434 0.57 +1.0 471,494 + Psest_0434 0.57 -1.2 471,494 + Psest_0434 0.57 -1.6 471,494 + Psest_0434 0.57 -0.3 471,495 - Psest_0434 0.58 +0.4 471,495 - Psest_0434 0.58 +0.8 471,495 - Psest_0434 0.58 -0.9 471,495 - Psest_0434 0.58 +0.0 471,495 - Psest_0434 0.58 +0.4 471,495 - Psest_0434 0.58 +0.1 471,495 - Psest_0434 0.58 -0.2 471,495 - Psest_0434 0.58 -0.6 471,495 - Psest_0434 0.58 -0.4 471,521 - Psest_0434 0.62 +0.8 471,551 - Psest_0434 0.67 -1.6 471,554 + Psest_0434 0.67 +0.4 471,554 + Psest_0434 0.67 +0.1 471,554 + Psest_0434 0.67 +1.8 471,554 + Psest_0434 0.67 +1.0 471,554 + Psest_0434 0.67 -0.4 471,554 + Psest_0434 0.67 +0.4 471,554 + Psest_0434 0.67 +0.6 471,554 + Psest_0434 0.67 +0.6 471,555 - Psest_0434 0.67 +1.1 471,574 - Psest_0434 0.70 -0.2 471,597 + Psest_0434 0.74 +0.8 471,597 + Psest_0434 0.74 +0.6 471,598 - Psest_0434 0.74 -0.8 471,598 - Psest_0434 0.74 +0.1 471,598 - Psest_0434 0.74 -0.0 471,799 + +0.3 471,800 - +0.5 471,839 + -0.3 471,839 + +1.3 471,839 + -0.1 471,839 + -0.8 471,840 - +0.4 471,840 - -0.6 471,840 - +0.1 471,868 + Psest_0435 0.10 +0.3 471,869 - Psest_0435 0.10 -0.6 471,889 + Psest_0435 0.17 -1.4 471,890 - Psest_0435 0.18 -1.1 471,895 + Psest_0435 0.19 +1.0 471,896 - Psest_0435 0.20 +0.6 471,896 - Psest_0435 0.20 +0.3 471,932 + Psest_0435 0.32 -0.5 471,932 + Psest_0435 0.32 +1.6 471,932 + Psest_0435 0.32 +2.0 471,932 + Psest_0435 0.32 -0.1 471,932 + Psest_0435 0.32 -0.1 471,932 + Psest_0435 0.32 +0.9 471,932 + Psest_0435 0.32 -0.6 471,933 - Psest_0435 0.32 -1.4 471,933 - Psest_0435 0.32 +2.2 471,933 - Psest_0435 0.32 -0.1 471,933 - Psest_0435 0.32 -1.9 472,002 + Psest_0435 0.55 +0.5 472,002 + Psest_0435 0.55 +0.8 472,002 + Psest_0435 0.55 -0.3 472,002 + Psest_0435 0.55 +0.6 472,012 - Psest_0435 0.59 -0.9 472,037 + Psest_0435 0.67 -0.1 472,037 + Psest_0435 0.67 -1.1 472,038 - Psest_0435 0.67 +0.1 472,038 - Psest_0435 0.67 +0.6 472,038 - Psest_0435 0.67 -0.8 472,038 - Psest_0435 0.67 +1.1 472,038 - Psest_0435 0.67 -0.1 472,038 - Psest_0435 0.67 +0.6 472,075 - Psest_0435 0.80 +0.3 472,111 - -0.8 472,316 - -0.7 472,346 + -0.4 472,346 + -0.9 472,346 + -0.4 472,346 + +0.4 472,346 + +2.0 472,346 + +0.6 472,346 + +1.2 472,346 + +1.1 472,346 + -0.1 472,346 + +1.2 472,346 + +0.8 472,346 + +2.9 472,347 - +1.6 472,347 - +1.5 472,395 + +0.8 472,413 + -0.3 472,414 - -0.1 472,431 + Psest_0436 0.15 +0.1 472,431 + Psest_0436 0.15 +0.9 472,437 + Psest_0436 0.17 -1.5 472,437 + Psest_0436 0.17 -1.2 472,437 + Psest_0436 0.17 +0.7 472,437 + Psest_0436 0.17 +0.8 472,437 + Psest_0436 0.17 +0.3 472,437 + Psest_0436 0.17 +0.1 472,438 - Psest_0436 0.17 +1.1 472,438 - Psest_0436 0.17 +0.4 472,573 + Psest_0436 0.70 +0.1 472,573 + Psest_0436 0.70 +0.4 472,573 + Psest_0436 0.70 +0.4 472,573 + Psest_0436 0.70 -1.2 472,573 + Psest_0436 0.70 +1.5 472,573 + Psest_0436 0.70 -0.0 472,573 + Psest_0436 0.70 +0.0 472,573 + Psest_0436 0.70 +0.1 472,573 + Psest_0436 0.70 +0.1 472,573 + Psest_0436 0.70 +1.1 472,573 + Psest_0436 0.70 +0.1 472,573 + Psest_0436 0.70 +0.0 472,573 + Psest_0436 0.70 -2.0 472,573 + Psest_0436 0.70 -2.1 472,573 + Psest_0436 0.70 +1.0 472,573 + Psest_0436 0.70 +0.1 472,573 + Psest_0436 0.70 +0.1 472,573 + Psest_0436 0.70 +2.1 472,573 + Psest_0436 0.70 -0.5 472,573 + Psest_0436 0.70 -0.2 472,573 + Psest_0436 0.70 +0.4 472,574 - Psest_0436 0.71 +0.4 472,574 - Psest_0436 0.71 +0.3 472,574 - Psest_0436 0.71 +0.9 472,574 - Psest_0436 0.71 +0.0 472,574 - Psest_0436 0.71 -0.4 472,574 - Psest_0436 0.71 -0.0 472,574 - Psest_0436 0.71 -0.0 472,574 - Psest_0436 0.71 +0.5 472,574 - Psest_0436 0.71 +0.4 472,574 - Psest_0436 0.71 -0.7 472,574 - Psest_0436 0.71 -0.7 472,574 - Psest_0436 0.71 -1.8 472,574 - Psest_0436 0.71 -0.4 472,574 - Psest_0436 0.71 +0.2 472,574 - Psest_0436 0.71 +1.8 472,574 - Psest_0436 0.71 +1.9 472,574 - Psest_0436 0.71 +0.4 472,577 + Psest_0436 0.72 +0.2 472,602 - Psest_0436 0.82 +0.8 472,705 + -0.7 472,705 + +0.1 472,705 + +1.0 472,705 + +1.4 472,706 - -0.2 472,706 - -0.4 472,706 - -0.6 472,706 - +0.8 472,760 + Psest_0437 0.15 +0.0 472,760 + Psest_0437 0.15 +0.3 472,761 - Psest_0437 0.15 +0.9 472,761 - Psest_0437 0.15 +0.8 472,872 + Psest_0437 0.63 +0.6 472,932 - Psest_0437 0.89 +0.0 472,932 - Psest_0437 0.89 +0.3 472,957 + +1.2 472,957 + +1.2 472,957 + +1.5 472,957 + +1.4 472,957 + -0.2 472,957 + -0.5 472,957 + -0.4 472,957 + +2.2 472,957 + +0.4 472,957 + +0.3 472,957 + -0.5 472,958 - +2.1 472,958 - +0.2 472,958 - -1.4 472,958 - -0.0 472,961 + +0.1 472,992 + +0.9 472,992 + +0.5 472,992 + +0.3 472,992 + +0.4 472,993 - +0.4 473,016 + +0.8 473,017 - -0.1 473,029 + +0.8 473,029 + -0.7 473,029 + -0.8 473,029 + -1.1 473,070 + +0.1 473,070 + +0.6 473,111 + +0.0 473,111 + +0.4 473,111 + +0.4 473,111 + -0.1 473,111 + -0.3 473,111 + -0.5 473,111 + +0.1 473,111 + -0.1 473,111 + +0.3 473,112 - -0.2 473,112 - -1.2 473,112 - +0.9 473,113 + -1.5 473,113 + +0.2 473,113 + -0.4 473,113 + -1.4 473,113 + -0.1 473,113 + +2.2 473,113 + +0.1 473,113 + -0.9 473,113 + +0.2 473,113 + +1.3 473,113 + -1.1 473,113 + +1.4 473,113 + +0.8 473,113 + +0.5 473,113 + +1.0 473,113 + -1.2 473,113 + -0.0 473,113 + -0.4 473,114 - +0.3 473,114 - +1.2 473,114 - +0.2 473,114 - -0.4 473,114 - +1.5 473,114 - +0.6 473,114 - +0.6 473,114 - -0.3 473,114 - -1.2 473,114 - +0.5 473,114 - -0.5 473,234 + -1.5 473,234 + +1.2 473,234 + -0.9 473,235 - +0.5 473,235 - -0.0 473,240 + +0.6 473,240 + +0.6 473,240 + +1.1 473,298 - +0.2 473,298 - -0.5 473,298 - -1.4 473,541 + +0.3
Or see this region's nucleotide sequence