Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4350 and Psest_4352 are separated by 293 nucleotides Psest_4352 and Psest_4353 are separated by 147 nucleotides Psest_4353 and Psest_4354 are separated by 74 nucleotides
Psest_4350: Psest_4350 - Transcriptional regulators of sugar metabolism, at 4,551,006 to 4,551,788
_4350
Psest_4352: Psest_4352 - UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase, at 4,552,082 to 4,553,440
_4352
Psest_4353: Psest_4353 - ATP synthase, F1 epsilon subunit (delta in mitochondria), at 4,553,588 to 4,554,016
_4353
Psest_4354: Psest_4354 - ATP synthase, F1 beta subunit, at 4,554,091 to 4,555,467
_4354
Position (kb)
4552
4553
4554 Strain fitness (log2 ratio)
-1
0
1 at 4551.226 kb on - strand, within Psest_4350 at 4551.226 kb on - strand, within Psest_4350 at 4551.226 kb on - strand, within Psest_4350 at 4551.243 kb on - strand, within Psest_4350 at 4551.560 kb on - strand, within Psest_4350 at 4551.560 kb on - strand, within Psest_4350 at 4551.560 kb on - strand, within Psest_4350 at 4551.576 kb on + strand, within Psest_4350 at 4551.576 kb on + strand, within Psest_4350 at 4551.576 kb on + strand, within Psest_4350 at 4551.576 kb on + strand, within Psest_4350 at 4551.576 kb on + strand, within Psest_4350 at 4551.577 kb on - strand, within Psest_4350 at 4551.577 kb on - strand, within Psest_4350 at 4551.577 kb on - strand, within Psest_4350 at 4551.793 kb on - strand at 4553.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 4,551,226 - Psest_4350 0.28 -0.8 4,551,226 - Psest_4350 0.28 +0.4 4,551,226 - Psest_4350 0.28 +1.5 4,551,243 - Psest_4350 0.30 -0.8 4,551,560 - Psest_4350 0.71 +0.3 4,551,560 - Psest_4350 0.71 +0.6 4,551,560 - Psest_4350 0.71 -0.6 4,551,576 + Psest_4350 0.73 +0.5 4,551,576 + Psest_4350 0.73 -0.7 4,551,576 + Psest_4350 0.73 +0.4 4,551,576 + Psest_4350 0.73 -1.1 4,551,576 + Psest_4350 0.73 -0.3 4,551,577 - Psest_4350 0.73 +0.3 4,551,577 - Psest_4350 0.73 -0.4 4,551,577 - Psest_4350 0.73 +0.6 4,551,793 - +1.2 4,553,560 - +0.3
Or see this region's nucleotide sequence