Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4262 and Psest_4263 overlap by 4 nucleotides Psest_4263 and Psest_4264 overlap by 4 nucleotides Psest_4264 and Psest_4265 overlap by 4 nucleotides
Psest_4262: Psest_4262 - dTDP-glucose 4,6-dehydratase, at 4,451,682 to 4,452,752
_4262
Psest_4263: Psest_4263 - glucose-1-phosphate thymidylyltransferase, short form, at 4,452,749 to 4,453,621
_4263
Psest_4264: Psest_4264 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 4,453,618 to 4,454,163
_4264
Psest_4265: Psest_4265 - dTDP-4-dehydrorhamnose reductase, at 4,454,160 to 4,455,068
_4265
Position (kb) 4452
4453
4454 Strain fitness (log2 ratio) -1
0
1
2
3 at 4452.714 kb on + strand at 4454.331 kb on + strand, within Psest_4265 at 4454.331 kb on + strand, within Psest_4265 at 4454.331 kb on + strand, within Psest_4265 at 4454.332 kb on - strand, within Psest_4265 at 4454.333 kb on + strand, within Psest_4265 at 4454.334 kb on - strand, within Psest_4265 at 4454.445 kb on + strand, within Psest_4265 at 4454.446 kb on - strand, within Psest_4265 at 4454.457 kb on + strand, within Psest_4265 at 4454.457 kb on + strand, within Psest_4265 at 4454.457 kb on + strand, within Psest_4265 at 4454.457 kb on + strand, within Psest_4265 at 4454.458 kb on - strand, within Psest_4265 at 4454.458 kb on - strand, within Psest_4265 at 4454.458 kb on - strand, within Psest_4265 at 4454.487 kb on + strand, within Psest_4265 at 4454.487 kb on + strand, within Psest_4265 at 4454.488 kb on - strand, within Psest_4265 at 4454.488 kb on - strand, within Psest_4265 at 4454.522 kb on - strand, within Psest_4265 at 4454.522 kb on - strand, within Psest_4265 at 4454.522 kb on - strand, within Psest_4265 at 4454.523 kb on + strand, within Psest_4265 at 4454.578 kb on - strand, within Psest_4265 at 4454.578 kb on - strand, within Psest_4265 at 4454.578 kb on - strand, within Psest_4265 at 4454.578 kb on - strand, within Psest_4265 at 4454.605 kb on - strand, within Psest_4265
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 4,452,714 + -1.1 4,454,331 + Psest_4265 0.19 +1.0 4,454,331 + Psest_4265 0.19 +1.5 4,454,331 + Psest_4265 0.19 +0.5 4,454,332 - Psest_4265 0.19 +0.6 4,454,333 + Psest_4265 0.19 +0.0 4,454,334 - Psest_4265 0.19 -0.5 4,454,445 + Psest_4265 0.31 +0.0 4,454,446 - Psest_4265 0.31 +0.6 4,454,457 + Psest_4265 0.33 +3.3 4,454,457 + Psest_4265 0.33 +1.3 4,454,457 + Psest_4265 0.33 +0.9 4,454,457 + Psest_4265 0.33 +1.3 4,454,458 - Psest_4265 0.33 +0.9 4,454,458 - Psest_4265 0.33 -0.1 4,454,458 - Psest_4265 0.33 +0.7 4,454,487 + Psest_4265 0.36 -0.1 4,454,487 + Psest_4265 0.36 +0.5 4,454,488 - Psest_4265 0.36 +1.3 4,454,488 - Psest_4265 0.36 +1.0 4,454,522 - Psest_4265 0.40 +1.0 4,454,522 - Psest_4265 0.40 +1.5 4,454,522 - Psest_4265 0.40 +1.3 4,454,523 + Psest_4265 0.40 +0.1 4,454,578 - Psest_4265 0.46 +1.6 4,454,578 - Psest_4265 0.46 +0.6 4,454,578 - Psest_4265 0.46 +0.6 4,454,578 - Psest_4265 0.46 +1.4 4,454,605 - Psest_4265 0.49 +2.5
Or see this region's nucleotide sequence