Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4262

Experiment: Def Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4261 and Psest_4262 are separated by 201 nucleotidesPsest_4262 and Psest_4263 overlap by 4 nucleotidesPsest_4263 and Psest_4264 overlap by 4 nucleotides Psest_4261: Psest_4261 - ABC-type multidrug transport system, permease component, at 4,450,353 to 4,451,480 _4261 Psest_4262: Psest_4262 - dTDP-glucose 4,6-dehydratase, at 4,451,682 to 4,452,752 _4262 Psest_4263: Psest_4263 - glucose-1-phosphate thymidylyltransferase, short form, at 4,452,749 to 4,453,621 _4263 Psest_4264: Psest_4264 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 4,453,618 to 4,454,163 _4264 Position (kb) 4451 4452 4453Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4451.056 kb on + strand, within Psest_4261at 4451.527 kb on + strandat 4451.549 kb on + strandat 4451.549 kb on + strandat 4451.549 kb on + strandat 4451.549 kb on + strandat 4451.549 kb on + strandat 4451.549 kb on + strandat 4451.549 kb on + strandat 4451.550 kb on - strandat 4451.550 kb on - strandat 4451.550 kb on - strandat 4451.550 kb on - strandat 4451.550 kb on - strandat 4451.550 kb on - strandat 4451.550 kb on - strandat 4451.550 kb on - strandat 4451.550 kb on - strandat 4451.550 kb on - strandat 4451.550 kb on - strandat 4451.550 kb on - strandat 4451.550 kb on - strandat 4451.553 kb on + strandat 4451.553 kb on + strandat 4451.553 kb on + strandat 4451.553 kb on + strandat 4451.553 kb on + strandat 4451.553 kb on + strandat 4451.553 kb on + strandat 4451.553 kb on + strandat 4451.553 kb on + strandat 4451.553 kb on + strandat 4451.553 kb on + strandat 4451.553 kb on + strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.554 kb on - strandat 4451.638 kb on + strandat 4451.638 kb on + strandat 4451.638 kb on + strandat 4452.714 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 20 mM
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4,451,056 + Psest_4261 0.62 -1.0
4,451,527 + -0.0
4,451,549 + +2.0
4,451,549 + +0.8
4,451,549 + +0.7
4,451,549 + +1.0
4,451,549 + -0.1
4,451,549 + +2.0
4,451,549 + -1.4
4,451,550 - +0.0
4,451,550 - +1.6
4,451,550 - -0.3
4,451,550 - +0.6
4,451,550 - +2.6
4,451,550 - -2.4
4,451,550 - +2.3
4,451,550 - +0.3
4,451,550 - +0.7
4,451,550 - -1.0
4,451,550 - -0.9
4,451,550 - -0.2
4,451,550 - +1.2
4,451,553 + +0.0
4,451,553 + +0.7
4,451,553 + +0.9
4,451,553 + +1.4
4,451,553 + +0.4
4,451,553 + +0.3
4,451,553 + -0.3
4,451,553 + +0.3
4,451,553 + +0.2
4,451,553 + +3.3
4,451,553 + +2.3
4,451,553 + -0.3
4,451,554 - +2.0
4,451,554 - +1.6
4,451,554 - +0.6
4,451,554 - +2.9
4,451,554 - +1.5
4,451,554 - +2.2
4,451,554 - -1.5
4,451,554 - -1.4
4,451,554 - +0.9
4,451,554 - -0.2
4,451,554 - -0.8
4,451,554 - +0.7
4,451,554 - +1.0
4,451,554 - +0.4
4,451,554 - +0.3
4,451,554 - +0.9
4,451,554 - -0.3
4,451,638 + +0.3
4,451,638 + +0.7
4,451,638 + -0.3
4,452,714 + -1.1

Or see this region's nucleotide sequence