Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3937 and Psest_3938 are separated by 47 nucleotides Psest_3938 and Psest_3939 are separated by 155 nucleotides Psest_3939 and Psest_3940 are separated by 245 nucleotides
Psest_3937: Psest_3937 - ATP-dependent protease HslVU, ATPase subunit, at 4,109,418 to 4,110,761
_3937
Psest_3938: Psest_3938 - Uncharacterized protein conserved in bacteria, at 4,110,809 to 4,111,183
_3938
Psest_3939: Psest_3939 - putative polyhydroxyalkanoic acid system protein, at 4,111,339 to 4,111,614
_3939
Psest_3940: Psest_3940 - ubiquinone/menaquinone biosynthesis methyltransferases, at 4,111,860 to 4,112,630
_3940
Position (kb)
4110
4111
4112 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 4110.216 kb on - strand, within Psest_3937 at 4110.480 kb on + strand, within Psest_3937 at 4110.699 kb on + strand at 4110.700 kb on - strand at 4110.751 kb on - strand at 4110.751 kb on - strand at 4110.751 kb on - strand at 4110.751 kb on - strand at 4110.751 kb on - strand at 4111.058 kb on - strand, within Psest_3938 at 4111.058 kb on - strand, within Psest_3938 at 4111.058 kb on - strand, within Psest_3938 at 4111.068 kb on - strand, within Psest_3938 at 4111.112 kb on + strand, within Psest_3938 at 4111.112 kb on + strand, within Psest_3938 at 4111.113 kb on - strand, within Psest_3938 at 4111.113 kb on - strand, within Psest_3938 at 4111.113 kb on - strand, within Psest_3938 at 4111.275 kb on - strand at 4111.275 kb on - strand at 4111.275 kb on - strand at 4111.293 kb on + strand at 4111.294 kb on - strand at 4111.294 kb on - strand at 4111.294 kb on - strand at 4111.294 kb on - strand at 4111.307 kb on + strand at 4111.324 kb on - strand at 4111.445 kb on + strand, within Psest_3939 at 4111.446 kb on - strand, within Psest_3939 at 4111.446 kb on - strand, within Psest_3939 at 4111.616 kb on - strand at 4111.649 kb on + strand at 4111.650 kb on - strand at 4111.650 kb on - strand at 4111.652 kb on - strand at 4111.652 kb on - strand at 4111.652 kb on - strand at 4111.818 kb on + strand at 4111.818 kb on + strand at 4111.819 kb on - strand at 4111.824 kb on + strand at 4111.824 kb on + strand at 4111.824 kb on + strand at 4111.825 kb on - strand at 4111.825 kb on - strand at 4111.825 kb on - strand at 4111.825 kb on - strand at 4111.825 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 4,110,216 - Psest_3937 0.59 +0.4 4,110,480 + Psest_3937 0.79 +1.0 4,110,699 + +1.5 4,110,700 - +0.8 4,110,751 - -0.2 4,110,751 - +0.0 4,110,751 - -0.6 4,110,751 - +1.8 4,110,751 - +0.3 4,111,058 - Psest_3938 0.66 -1.8 4,111,058 - Psest_3938 0.66 +0.3 4,111,058 - Psest_3938 0.66 +3.5 4,111,068 - Psest_3938 0.69 +2.3 4,111,112 + Psest_3938 0.81 +1.5 4,111,112 + Psest_3938 0.81 +1.9 4,111,113 - Psest_3938 0.81 +5.8 4,111,113 - Psest_3938 0.81 +1.9 4,111,113 - Psest_3938 0.81 +0.5 4,111,275 - +1.0 4,111,275 - -0.9 4,111,275 - +0.1 4,111,293 + -0.2 4,111,294 - +0.2 4,111,294 - -1.6 4,111,294 - -0.5 4,111,294 - +2.3 4,111,307 + +1.6 4,111,324 - +0.5 4,111,445 + Psest_3939 0.38 +1.9 4,111,446 - Psest_3939 0.39 -0.5 4,111,446 - Psest_3939 0.39 +0.0 4,111,616 - +1.7 4,111,649 + -0.6 4,111,650 - -1.2 4,111,650 - -0.7 4,111,652 - +0.9 4,111,652 - +1.0 4,111,652 - -0.8 4,111,818 + +0.4 4,111,818 + +1.5 4,111,819 - -0.5 4,111,824 + +1.0 4,111,824 + -0.2 4,111,824 + +1.0 4,111,825 - -0.7 4,111,825 - +0.0 4,111,825 - -1.9 4,111,825 - -0.6 4,111,825 - -2.5
Or see this region's nucleotide sequence