Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3663

Experiment: Def Chlorate 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3661 and Psest_3662 are separated by 7 nucleotidesPsest_3662 and Psest_3663 are separated by 1 nucleotidesPsest_3663 and Psest_3664 overlap by 4 nucleotides Psest_3661: Psest_3661 - Protein of unknown function (DUF3530)., at 3,823,712 to 3,824,725 _3661 Psest_3662: Psest_3662 - DnaJ-domain-containing proteins 1, at 3,824,733 to 3,825,500 _3662 Psest_3663: Psest_3663 - Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon), at 3,825,502 to 3,826,173 _3663 Psest_3664: Psest_3664 - Predicted phosphotransferase related to Ser/Thr protein kinases, at 3,826,170 to 3,827,228 _3664 Position (kb) 3825 3826 3827Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3824.507 kb on + strand, within Psest_3661at 3824.507 kb on + strand, within Psest_3661at 3824.508 kb on - strand, within Psest_3661at 3824.508 kb on - strand, within Psest_3661at 3824.508 kb on - strand, within Psest_3661at 3824.508 kb on - strand, within Psest_3661at 3824.532 kb on + strand, within Psest_3661at 3824.532 kb on + strand, within Psest_3661at 3824.533 kb on - strand, within Psest_3661at 3824.533 kb on - strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.545 kb on + strand, within Psest_3661at 3824.545 kb on + strand, within Psest_3661at 3824.546 kb on - strand, within Psest_3661at 3824.664 kb on - strandat 3824.711 kb on - strandat 3824.711 kb on - strandat 3824.723 kb on + strandat 3824.724 kb on - strandat 3824.858 kb on + strand, within Psest_3662at 3824.859 kb on - strand, within Psest_3662at 3824.859 kb on - strand, within Psest_3662at 3824.942 kb on - strand, within Psest_3662at 3825.267 kb on - strand, within Psest_3662at 3825.520 kb on + strandat 3825.520 kb on + strandat 3825.521 kb on - strandat 3825.521 kb on - strandat 3825.521 kb on - strandat 3825.521 kb on - strandat 3825.521 kb on - strandat 3826.256 kb on - strandat 3826.708 kb on + strand, within Psest_3664at 3826.861 kb on + strand, within Psest_3664at 3826.861 kb on + strand, within Psest_3664at 3826.862 kb on - strand, within Psest_3664

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 20 mM
remove
3,824,507 + Psest_3661 0.78 -0.4
3,824,507 + Psest_3661 0.78 -1.2
3,824,508 - Psest_3661 0.79 +0.2
3,824,508 - Psest_3661 0.79 +0.0
3,824,508 - Psest_3661 0.79 +1.1
3,824,508 - Psest_3661 0.79 +1.6
3,824,532 + Psest_3661 0.81 -1.8
3,824,532 + Psest_3661 0.81 -2.3
3,824,533 - Psest_3661 0.81 +1.6
3,824,533 - Psest_3661 0.81 -0.8
3,824,543 + Psest_3661 0.82 +0.6
3,824,543 + Psest_3661 0.82 -1.6
3,824,543 + Psest_3661 0.82 -1.7
3,824,543 + Psest_3661 0.82 -1.7
3,824,543 + Psest_3661 0.82 +1.2
3,824,543 + Psest_3661 0.82 +0.2
3,824,543 + Psest_3661 0.82 +0.2
3,824,543 + Psest_3661 0.82 +0.1
3,824,543 + Psest_3661 0.82 -0.4
3,824,543 + Psest_3661 0.82 -0.9
3,824,543 + Psest_3661 0.82 +0.2
3,824,543 + Psest_3661 0.82 +0.6
3,824,543 + Psest_3661 0.82 -0.2
3,824,543 + Psest_3661 0.82 -0.5
3,824,543 + Psest_3661 0.82 +2.2
3,824,543 + Psest_3661 0.82 -1.2
3,824,543 + Psest_3661 0.82 -0.4
3,824,543 + Psest_3661 0.82 +0.6
3,824,544 - Psest_3661 0.82 -0.4
3,824,544 - Psest_3661 0.82 +0.9
3,824,544 - Psest_3661 0.82 +0.9
3,824,544 - Psest_3661 0.82 +1.5
3,824,544 - Psest_3661 0.82 +0.4
3,824,544 - Psest_3661 0.82 +0.9
3,824,544 - Psest_3661 0.82 +0.8
3,824,544 - Psest_3661 0.82 -0.8
3,824,544 - Psest_3661 0.82 +1.4
3,824,544 - Psest_3661 0.82 +3.0
3,824,544 - Psest_3661 0.82 -0.1
3,824,545 + Psest_3661 0.82 -0.6
3,824,545 + Psest_3661 0.82 -0.5
3,824,546 - Psest_3661 0.82 +1.6
3,824,664 - +0.1
3,824,711 - +0.8
3,824,711 - +0.0
3,824,723 + +1.2
3,824,724 - +2.2
3,824,858 + Psest_3662 0.16 -1.2
3,824,859 - Psest_3662 0.16 +0.6
3,824,859 - Psest_3662 0.16 +0.1
3,824,942 - Psest_3662 0.27 +0.4
3,825,267 - Psest_3662 0.70 +0.2
3,825,520 + +0.9
3,825,520 + +0.5
3,825,521 - -1.6
3,825,521 - +0.2
3,825,521 - -0.8
3,825,521 - -0.1
3,825,521 - -2.3
3,826,256 - +0.9
3,826,708 + Psest_3664 0.51 +2.2
3,826,861 + Psest_3664 0.65 +0.9
3,826,861 + Psest_3664 0.65 +2.2
3,826,862 - Psest_3664 0.65 +0.4

Or see this region's nucleotide sequence