Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3523 and Psest_3524 overlap by 1 nucleotides Psest_3524 and Psest_3525 are separated by 209 nucleotides
Psest_3523: Psest_3523 - putative thymidine phosphorylase, at 3,703,148 to 3,704,728
_3523
Psest_3524: Psest_3524 - ribose-phosphate pyrophosphokinase, at 3,704,728 to 3,705,624
_3524
Psest_3525: Psest_3525 - Formamidopyrimidine-DNA glycosylase, at 3,705,834 to 3,706,616
_3525
Position (kb)
3704
3705
3706 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3704.317 kb on - strand, within Psest_3523 at 3704.619 kb on - strand at 3704.746 kb on + strand at 3704.747 kb on - strand at 3704.747 kb on - strand at 3704.747 kb on - strand at 3704.747 kb on - strand at 3704.747 kb on - strand at 3704.899 kb on + strand, within Psest_3524 at 3705.001 kb on + strand, within Psest_3524 at 3705.001 kb on + strand, within Psest_3524 at 3705.001 kb on + strand, within Psest_3524 at 3705.001 kb on + strand, within Psest_3524 at 3705.001 kb on + strand, within Psest_3524 at 3705.001 kb on + strand, within Psest_3524 at 3705.001 kb on + strand, within Psest_3524 at 3705.002 kb on - strand, within Psest_3524 at 3705.002 kb on - strand, within Psest_3524 at 3705.010 kb on + strand, within Psest_3524 at 3705.010 kb on + strand, within Psest_3524 at 3705.010 kb on + strand, within Psest_3524 at 3705.011 kb on - strand, within Psest_3524 at 3705.011 kb on - strand, within Psest_3524 at 3705.011 kb on - strand, within Psest_3524 at 3705.011 kb on - strand, within Psest_3524 at 3705.011 kb on - strand, within Psest_3524 at 3705.717 kb on + strand at 3705.717 kb on + strand at 3705.717 kb on + strand at 3705.717 kb on + strand at 3705.717 kb on + strand at 3705.718 kb on - strand at 3705.718 kb on - strand at 3705.718 kb on - strand at 3705.718 kb on - strand at 3705.718 kb on - strand at 3705.718 kb on - strand at 3705.890 kb on - strand at 3706.054 kb on + strand, within Psest_3525 at 3706.054 kb on + strand, within Psest_3525 at 3706.054 kb on + strand, within Psest_3525 at 3706.054 kb on + strand, within Psest_3525 at 3706.055 kb on - strand, within Psest_3525 at 3706.055 kb on - strand, within Psest_3525 at 3706.055 kb on - strand, within Psest_3525 at 3706.055 kb on - strand, within Psest_3525 at 3706.059 kb on - strand, within Psest_3525 at 3706.291 kb on + strand, within Psest_3525 at 3706.291 kb on + strand, within Psest_3525 at 3706.292 kb on - strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.481 kb on + strand, within Psest_3525 at 3706.481 kb on + strand, within Psest_3525 at 3706.481 kb on + strand, within Psest_3525 at 3706.482 kb on - strand, within Psest_3525 at 3706.482 kb on - strand, within Psest_3525 at 3706.482 kb on - strand, within Psest_3525 at 3706.482 kb on - strand, within Psest_3525 at 3706.482 kb on - strand, within Psest_3525
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 3,704,317 - Psest_3523 0.74 -0.8 3,704,619 - -0.2 3,704,746 + +1.2 3,704,747 - +1.2 3,704,747 - +0.5 3,704,747 - -1.0 3,704,747 - +0.4 3,704,747 - -0.4 3,704,899 + Psest_3524 0.19 -0.2 3,705,001 + Psest_3524 0.30 -0.9 3,705,001 + Psest_3524 0.30 +2.0 3,705,001 + Psest_3524 0.30 -1.4 3,705,001 + Psest_3524 0.30 -0.4 3,705,001 + Psest_3524 0.30 -1.8 3,705,001 + Psest_3524 0.30 -1.3 3,705,001 + Psest_3524 0.30 -1.2 3,705,002 - Psest_3524 0.31 -1.2 3,705,002 - Psest_3524 0.31 +1.2 3,705,010 + Psest_3524 0.31 +0.2 3,705,010 + Psest_3524 0.31 +1.6 3,705,010 + Psest_3524 0.31 -0.1 3,705,011 - Psest_3524 0.32 -0.2 3,705,011 - Psest_3524 0.32 -1.0 3,705,011 - Psest_3524 0.32 -0.0 3,705,011 - Psest_3524 0.32 -1.6 3,705,011 - Psest_3524 0.32 -0.7 3,705,717 + -0.8 3,705,717 + -1.0 3,705,717 + -0.9 3,705,717 + +2.7 3,705,717 + -0.4 3,705,718 - -1.7 3,705,718 - -0.1 3,705,718 - -1.9 3,705,718 - +1.2 3,705,718 - -0.5 3,705,718 - -1.7 3,705,890 - -1.2 3,706,054 + Psest_3525 0.28 -0.9 3,706,054 + Psest_3525 0.28 -1.0 3,706,054 + Psest_3525 0.28 +0.6 3,706,054 + Psest_3525 0.28 -0.5 3,706,055 - Psest_3525 0.28 -0.7 3,706,055 - Psest_3525 0.28 +0.2 3,706,055 - Psest_3525 0.28 -0.2 3,706,055 - Psest_3525 0.28 +0.6 3,706,059 - Psest_3525 0.29 +2.2 3,706,291 + Psest_3525 0.58 +0.8 3,706,291 + Psest_3525 0.58 -0.3 3,706,292 - Psest_3525 0.58 -0.0 3,706,336 + Psest_3525 0.64 +1.2 3,706,336 + Psest_3525 0.64 -2.8 3,706,336 + Psest_3525 0.64 -1.8 3,706,336 + Psest_3525 0.64 +0.6 3,706,336 + Psest_3525 0.64 -0.6 3,706,336 + Psest_3525 0.64 +0.2 3,706,336 + Psest_3525 0.64 +0.1 3,706,336 + Psest_3525 0.64 +0.4 3,706,337 - Psest_3525 0.64 +0.2 3,706,337 - Psest_3525 0.64 -0.6 3,706,337 - Psest_3525 0.64 -2.0 3,706,337 - Psest_3525 0.64 +1.2 3,706,337 - Psest_3525 0.64 +0.2 3,706,337 - Psest_3525 0.64 +0.7 3,706,337 - Psest_3525 0.64 +0.7 3,706,337 - Psest_3525 0.64 -0.8 3,706,337 - Psest_3525 0.64 -1.4 3,706,337 - Psest_3525 0.64 +0.4 3,706,337 - Psest_3525 0.64 +0.6 3,706,337 - Psest_3525 0.64 -0.2 3,706,337 - Psest_3525 0.64 -0.8 3,706,337 - Psest_3525 0.64 -0.5 3,706,337 - Psest_3525 0.64 +0.6 3,706,337 - Psest_3525 0.64 +0.6 3,706,337 - Psest_3525 0.64 -0.2 3,706,481 + Psest_3525 0.83 +0.6 3,706,481 + Psest_3525 0.83 +0.2 3,706,481 + Psest_3525 0.83 -1.3 3,706,482 - Psest_3525 0.83 -0.8 3,706,482 - Psest_3525 0.83 -0.8 3,706,482 - Psest_3525 0.83 +1.2 3,706,482 - Psest_3525 0.83 -0.4 3,706,482 - Psest_3525 0.83 -0.7
Or see this region's nucleotide sequence