Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3524

Experiment: Def Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3523 and Psest_3524 overlap by 1 nucleotidesPsest_3524 and Psest_3525 are separated by 209 nucleotides Psest_3523: Psest_3523 - putative thymidine phosphorylase, at 3,703,148 to 3,704,728 _3523 Psest_3524: Psest_3524 - ribose-phosphate pyrophosphokinase, at 3,704,728 to 3,705,624 _3524 Psest_3525: Psest_3525 - Formamidopyrimidine-DNA glycosylase, at 3,705,834 to 3,706,616 _3525 Position (kb) 3704 3705 3706Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3704.317 kb on - strand, within Psest_3523at 3704.619 kb on - strandat 3704.746 kb on + strandat 3704.747 kb on - strandat 3704.747 kb on - strandat 3704.747 kb on - strandat 3704.747 kb on - strandat 3704.747 kb on - strandat 3704.899 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.002 kb on - strand, within Psest_3524at 3705.002 kb on - strand, within Psest_3524at 3705.010 kb on + strand, within Psest_3524at 3705.010 kb on + strand, within Psest_3524at 3705.010 kb on + strand, within Psest_3524at 3705.011 kb on - strand, within Psest_3524at 3705.011 kb on - strand, within Psest_3524at 3705.011 kb on - strand, within Psest_3524at 3705.011 kb on - strand, within Psest_3524at 3705.011 kb on - strand, within Psest_3524at 3705.717 kb on + strandat 3705.717 kb on + strandat 3705.717 kb on + strandat 3705.717 kb on + strandat 3705.717 kb on + strandat 3705.718 kb on - strandat 3705.718 kb on - strandat 3705.718 kb on - strandat 3705.718 kb on - strandat 3705.718 kb on - strandat 3705.718 kb on - strandat 3705.890 kb on - strandat 3706.054 kb on + strand, within Psest_3525at 3706.054 kb on + strand, within Psest_3525at 3706.054 kb on + strand, within Psest_3525at 3706.054 kb on + strand, within Psest_3525at 3706.055 kb on - strand, within Psest_3525at 3706.055 kb on - strand, within Psest_3525at 3706.055 kb on - strand, within Psest_3525at 3706.055 kb on - strand, within Psest_3525at 3706.059 kb on - strand, within Psest_3525at 3706.291 kb on + strand, within Psest_3525at 3706.291 kb on + strand, within Psest_3525at 3706.292 kb on - strand, within Psest_3525at 3706.336 kb on + strand, within Psest_3525at 3706.336 kb on + strand, within Psest_3525at 3706.336 kb on + strand, within Psest_3525at 3706.336 kb on + strand, within Psest_3525at 3706.336 kb on + strand, within Psest_3525at 3706.336 kb on + strand, within Psest_3525at 3706.336 kb on + strand, within Psest_3525at 3706.336 kb on + strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.337 kb on - strand, within Psest_3525at 3706.481 kb on + strand, within Psest_3525at 3706.481 kb on + strand, within Psest_3525at 3706.481 kb on + strand, within Psest_3525at 3706.482 kb on - strand, within Psest_3525at 3706.482 kb on - strand, within Psest_3525at 3706.482 kb on - strand, within Psest_3525at 3706.482 kb on - strand, within Psest_3525at 3706.482 kb on - strand, within Psest_3525

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 20 mM
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3,704,317 - Psest_3523 0.74 -0.8
3,704,619 - -0.2
3,704,746 + +1.2
3,704,747 - +1.2
3,704,747 - +0.5
3,704,747 - -1.0
3,704,747 - +0.4
3,704,747 - -0.4
3,704,899 + Psest_3524 0.19 -0.2
3,705,001 + Psest_3524 0.30 -0.9
3,705,001 + Psest_3524 0.30 +2.0
3,705,001 + Psest_3524 0.30 -1.4
3,705,001 + Psest_3524 0.30 -0.4
3,705,001 + Psest_3524 0.30 -1.8
3,705,001 + Psest_3524 0.30 -1.3
3,705,001 + Psest_3524 0.30 -1.2
3,705,002 - Psest_3524 0.31 -1.2
3,705,002 - Psest_3524 0.31 +1.2
3,705,010 + Psest_3524 0.31 +0.2
3,705,010 + Psest_3524 0.31 +1.6
3,705,010 + Psest_3524 0.31 -0.1
3,705,011 - Psest_3524 0.32 -0.2
3,705,011 - Psest_3524 0.32 -1.0
3,705,011 - Psest_3524 0.32 -0.0
3,705,011 - Psest_3524 0.32 -1.6
3,705,011 - Psest_3524 0.32 -0.7
3,705,717 + -0.8
3,705,717 + -1.0
3,705,717 + -0.9
3,705,717 + +2.7
3,705,717 + -0.4
3,705,718 - -1.7
3,705,718 - -0.1
3,705,718 - -1.9
3,705,718 - +1.2
3,705,718 - -0.5
3,705,718 - -1.7
3,705,890 - -1.2
3,706,054 + Psest_3525 0.28 -0.9
3,706,054 + Psest_3525 0.28 -1.0
3,706,054 + Psest_3525 0.28 +0.6
3,706,054 + Psest_3525 0.28 -0.5
3,706,055 - Psest_3525 0.28 -0.7
3,706,055 - Psest_3525 0.28 +0.2
3,706,055 - Psest_3525 0.28 -0.2
3,706,055 - Psest_3525 0.28 +0.6
3,706,059 - Psest_3525 0.29 +2.2
3,706,291 + Psest_3525 0.58 +0.8
3,706,291 + Psest_3525 0.58 -0.3
3,706,292 - Psest_3525 0.58 -0.0
3,706,336 + Psest_3525 0.64 +1.2
3,706,336 + Psest_3525 0.64 -2.8
3,706,336 + Psest_3525 0.64 -1.8
3,706,336 + Psest_3525 0.64 +0.6
3,706,336 + Psest_3525 0.64 -0.6
3,706,336 + Psest_3525 0.64 +0.2
3,706,336 + Psest_3525 0.64 +0.1
3,706,336 + Psest_3525 0.64 +0.4
3,706,337 - Psest_3525 0.64 +0.2
3,706,337 - Psest_3525 0.64 -0.6
3,706,337 - Psest_3525 0.64 -2.0
3,706,337 - Psest_3525 0.64 +1.2
3,706,337 - Psest_3525 0.64 +0.2
3,706,337 - Psest_3525 0.64 +0.7
3,706,337 - Psest_3525 0.64 +0.7
3,706,337 - Psest_3525 0.64 -0.8
3,706,337 - Psest_3525 0.64 -1.4
3,706,337 - Psest_3525 0.64 +0.4
3,706,337 - Psest_3525 0.64 +0.6
3,706,337 - Psest_3525 0.64 -0.2
3,706,337 - Psest_3525 0.64 -0.8
3,706,337 - Psest_3525 0.64 -0.5
3,706,337 - Psest_3525 0.64 +0.6
3,706,337 - Psest_3525 0.64 +0.6
3,706,337 - Psest_3525 0.64 -0.2
3,706,481 + Psest_3525 0.83 +0.6
3,706,481 + Psest_3525 0.83 +0.2
3,706,481 + Psest_3525 0.83 -1.3
3,706,482 - Psest_3525 0.83 -0.8
3,706,482 - Psest_3525 0.83 -0.8
3,706,482 - Psest_3525 0.83 +1.2
3,706,482 - Psest_3525 0.83 -0.4
3,706,482 - Psest_3525 0.83 -0.7

Or see this region's nucleotide sequence