Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3460

Experiment: Def Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3458 and Psest_3459 are separated by 92 nucleotidesPsest_3459 and Psest_3460 are separated by 13 nucleotidesPsest_3460 and Psest_3461 are separated by 31 nucleotidesPsest_3461 and Psest_3462 overlap by 11 nucleotides Psest_3458: Psest_3458 - hypothetical protein, at 3,629,053 to 3,629,517 _3458 Psest_3459: Psest_3459 - hypothetical protein, at 3,629,610 to 3,630,092 _3459 Psest_3460: Psest_3460 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 3,630,106 to 3,632,232 _3460 Psest_3461: Psest_3461 - Diacylglycerol kinase, at 3,632,264 to 3,632,659 _3461 Psest_3462: Psest_3462 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 3,632,649 to 3,633,368 _3462 Position (kb) 3630 3631 3632 3633Strain fitness (log2 ratio) -1 0 1 2 3at 3629.255 kb on - strand, within Psest_3458at 3629.358 kb on + strand, within Psest_3458at 3629.358 kb on + strand, within Psest_3458at 3629.358 kb on + strand, within Psest_3458at 3629.358 kb on + strand, within Psest_3458at 3629.359 kb on - strand, within Psest_3458at 3629.359 kb on - strand, within Psest_3458at 3629.359 kb on - strand, within Psest_3458at 3629.359 kb on - strand, within Psest_3458at 3629.359 kb on - strand, within Psest_3458at 3629.560 kb on + strandat 3629.895 kb on + strand, within Psest_3459at 3629.895 kb on + strand, within Psest_3459at 3629.896 kb on - strand, within Psest_3459at 3629.896 kb on - strand, within Psest_3459at 3629.896 kb on - strand, within Psest_3459at 3629.896 kb on - strand, within Psest_3459at 3629.896 kb on - strand, within Psest_3459at 3629.896 kb on - strand, within Psest_3459at 3629.966 kb on - strand, within Psest_3459at 3630.054 kb on + strandat 3630.054 kb on + strandat 3630.055 kb on - strandat 3630.320 kb on + strand, within Psest_3460at 3630.320 kb on + strand, within Psest_3460at 3630.674 kb on + strand, within Psest_3460at 3630.674 kb on + strand, within Psest_3460at 3630.675 kb on - strand, within Psest_3460at 3630.842 kb on + strand, within Psest_3460at 3630.842 kb on + strand, within Psest_3460at 3630.842 kb on + strand, within Psest_3460at 3630.842 kb on + strand, within Psest_3460at 3630.842 kb on + strandat 3630.842 kb on + strand, within Psest_3460at 3630.843 kb on - strand, within Psest_3460at 3630.843 kb on - strand, within Psest_3460at 3630.843 kb on - strand, within Psest_3460at 3630.947 kb on + strand, within Psest_3460at 3630.947 kb on + strand, within Psest_3460at 3630.947 kb on + strand, within Psest_3460at 3630.947 kb on + strand, within Psest_3460at 3630.948 kb on - strand, within Psest_3460at 3630.948 kb on - strand, within Psest_3460at 3630.948 kb on - strand, within Psest_3460at 3630.948 kb on - strand, within Psest_3460at 3630.948 kb on - strand, within Psest_3460at 3630.955 kb on - strand, within Psest_3460at 3631.028 kb on + strand, within Psest_3460at 3631.028 kb on + strand, within Psest_3460at 3631.029 kb on - strand, within Psest_3460at 3631.029 kb on - strand, within Psest_3460at 3631.034 kb on + strand, within Psest_3460at 3631.034 kb on + strand, within Psest_3460at 3631.035 kb on - strand, within Psest_3460at 3631.035 kb on - strand, within Psest_3460at 3631.035 kb on - strand, within Psest_3460at 3631.035 kb on - strand, within Psest_3460at 3631.035 kb on - strand, within Psest_3460at 3631.089 kb on + strand, within Psest_3460at 3631.090 kb on - strand, within Psest_3460at 3631.115 kb on + strand, within Psest_3460at 3631.115 kb on + strand, within Psest_3460at 3631.274 kb on + strand, within Psest_3460at 3631.274 kb on + strand, within Psest_3460at 3631.275 kb on - strand, within Psest_3460at 3631.275 kb on - strand, within Psest_3460at 3631.844 kb on + strand, within Psest_3460at 3631.845 kb on - strand, within Psest_3460at 3631.845 kb on - strand, within Psest_3460at 3631.887 kb on - strand, within Psest_3460at 3631.887 kb on - strand, within Psest_3460at 3631.983 kb on + strand, within Psest_3460at 3632.015 kb on + strand, within Psest_3460at 3632.015 kb on + strand, within Psest_3460at 3632.016 kb on - strand, within Psest_3460at 3632.016 kb on - strand, within Psest_3460at 3632.016 kb on - strand, within Psest_3460at 3632.016 kb on - strand, within Psest_3460at 3632.016 kb on - strand, within Psest_3460at 3632.016 kb on - strand, within Psest_3460at 3632.016 kb on - strand, within Psest_3460at 3632.105 kb on + strandat 3632.106 kb on - strandat 3632.106 kb on - strandat 3632.106 kb on - strandat 3632.965 kb on + strand, within Psest_3462at 3632.969 kb on - strand, within Psest_3462at 3632.969 kb on - strand, within Psest_3462at 3633.076 kb on + strand, within Psest_3462at 3633.076 kb on + strand, within Psest_3462at 3633.076 kb on + strand, within Psest_3462at 3633.076 kb on + strand, within Psest_3462at 3633.076 kb on + strand, within Psest_3462at 3633.077 kb on - strand, within Psest_3462at 3633.077 kb on - strand, within Psest_3462at 3633.077 kb on - strand, within Psest_3462at 3633.077 kb on - strand, within Psest_3462

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 20 mM
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3,629,255 - Psest_3458 0.43 +1.1
3,629,358 + Psest_3458 0.66 +0.8
3,629,358 + Psest_3458 0.66 +2.1
3,629,358 + Psest_3458 0.66 +2.1
3,629,358 + Psest_3458 0.66 +1.1
3,629,359 - Psest_3458 0.66 +1.1
3,629,359 - Psest_3458 0.66 +2.1
3,629,359 - Psest_3458 0.66 +1.1
3,629,359 - Psest_3458 0.66 +1.1
3,629,359 - Psest_3458 0.66 -0.3
3,629,560 + +1.1
3,629,895 + Psest_3459 0.59 +0.5
3,629,895 + Psest_3459 0.59 +0.5
3,629,896 - Psest_3459 0.59 +0.5
3,629,896 - Psest_3459 0.59 +1.1
3,629,896 - Psest_3459 0.59 +0.5
3,629,896 - Psest_3459 0.59 +0.1
3,629,896 - Psest_3459 0.59 +2.1
3,629,896 - Psest_3459 0.59 +2.1
3,629,966 - Psest_3459 0.74 -0.6
3,630,054 + +1.1
3,630,054 + +2.5
3,630,055 - -0.7
3,630,320 + Psest_3460 0.10 -1.3
3,630,320 + Psest_3460 0.10 +2.1
3,630,674 + Psest_3460 0.27 +0.1
3,630,674 + Psest_3460 0.27 +1.1
3,630,675 - Psest_3460 0.27 +0.1
3,630,842 + Psest_3460 0.35 +2.1
3,630,842 + Psest_3460 0.35 +1.9
3,630,842 + Psest_3460 0.35 +0.3
3,630,842 + Psest_3460 0.35 +1.4
3,630,842 + +0.1
3,630,842 + Psest_3460 0.35 -1.0
3,630,843 - Psest_3460 0.35 -0.2
3,630,843 - Psest_3460 0.35 +2.1
3,630,843 - Psest_3460 0.35 -0.2
3,630,947 + Psest_3460 0.40 +0.1
3,630,947 + Psest_3460 0.40 -0.9
3,630,947 + Psest_3460 0.40 +0.1
3,630,947 + Psest_3460 0.40 -0.7
3,630,948 - Psest_3460 0.40 -1.0
3,630,948 - Psest_3460 0.40 -0.2
3,630,948 - Psest_3460 0.40 +1.4
3,630,948 - Psest_3460 0.40 +0.8
3,630,948 - Psest_3460 0.40 -0.2
3,630,955 - Psest_3460 0.40 -0.0
3,631,028 + Psest_3460 0.43 +3.1
3,631,028 + Psest_3460 0.43 +0.3
3,631,029 - Psest_3460 0.43 -0.5
3,631,029 - Psest_3460 0.43 -0.5
3,631,034 + Psest_3460 0.44 +0.7
3,631,034 + Psest_3460 0.44 +0.5
3,631,035 - Psest_3460 0.44 +1.1
3,631,035 - Psest_3460 0.44 -0.3
3,631,035 - Psest_3460 0.44 +0.7
3,631,035 - Psest_3460 0.44 +1.1
3,631,035 - Psest_3460 0.44 +2.5
3,631,089 + Psest_3460 0.46 +0.8
3,631,090 - Psest_3460 0.46 -1.3
3,631,115 + Psest_3460 0.47 +2.1
3,631,115 + Psest_3460 0.47 +0.1
3,631,274 + Psest_3460 0.55 -0.9
3,631,274 + Psest_3460 0.55 -0.4
3,631,275 - Psest_3460 0.55 -0.2
3,631,275 - Psest_3460 0.55 -1.5
3,631,844 + Psest_3460 0.82 +0.3
3,631,845 - Psest_3460 0.82 +2.1
3,631,845 - Psest_3460 0.82 +0.5
3,631,887 - Psest_3460 0.84 +1.1
3,631,887 - Psest_3460 0.84 +0.8
3,631,983 + Psest_3460 0.88 -0.5
3,632,015 + Psest_3460 0.90 -0.2
3,632,015 + Psest_3460 0.90 +1.1
3,632,016 - Psest_3460 0.90 -0.1
3,632,016 - Psest_3460 0.90 +1.1
3,632,016 - Psest_3460 0.90 +1.1
3,632,016 - Psest_3460 0.90 -0.0
3,632,016 - Psest_3460 0.90 -0.9
3,632,016 - Psest_3460 0.90 +0.5
3,632,016 - Psest_3460 0.90 +1.1
3,632,105 + +1.0
3,632,106 - +0.5
3,632,106 - +0.5
3,632,106 - +3.1
3,632,965 + Psest_3462 0.44 -0.6
3,632,969 - Psest_3462 0.44 +1.5
3,632,969 - Psest_3462 0.44 +0.7
3,633,076 + Psest_3462 0.59 -0.3
3,633,076 + Psest_3462 0.59 -0.6
3,633,076 + Psest_3462 0.59 +0.1
3,633,076 + Psest_3462 0.59 -0.2
3,633,076 + Psest_3462 0.59 +0.1
3,633,077 - Psest_3462 0.59 -0.7
3,633,077 - Psest_3462 0.59 +0.5
3,633,077 - Psest_3462 0.59 -1.5
3,633,077 - Psest_3462 0.59 +0.4

Or see this region's nucleotide sequence