Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3458 and Psest_3459 are separated by 92 nucleotides Psest_3459 and Psest_3460 are separated by 13 nucleotides Psest_3460 and Psest_3461 are separated by 31 nucleotides Psest_3461 and Psest_3462 overlap by 11 nucleotides
Psest_3458: Psest_3458 - hypothetical protein, at 3,629,053 to 3,629,517
_3458
Psest_3459: Psest_3459 - hypothetical protein, at 3,629,610 to 3,630,092
_3459
Psest_3460: Psest_3460 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 3,630,106 to 3,632,232
_3460
Psest_3461: Psest_3461 - Diacylglycerol kinase, at 3,632,264 to 3,632,659
_3461
Psest_3462: Psest_3462 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 3,632,649 to 3,633,368
_3462
Position (kb)
3630
3631
3632
3633 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3629.255 kb on - strand, within Psest_3458 at 3629.358 kb on + strand, within Psest_3458 at 3629.358 kb on + strand, within Psest_3458 at 3629.358 kb on + strand, within Psest_3458 at 3629.358 kb on + strand, within Psest_3458 at 3629.359 kb on - strand, within Psest_3458 at 3629.359 kb on - strand, within Psest_3458 at 3629.359 kb on - strand, within Psest_3458 at 3629.359 kb on - strand, within Psest_3458 at 3629.359 kb on - strand, within Psest_3458 at 3629.560 kb on + strand at 3629.895 kb on + strand, within Psest_3459 at 3629.895 kb on + strand, within Psest_3459 at 3629.896 kb on - strand, within Psest_3459 at 3629.896 kb on - strand, within Psest_3459 at 3629.896 kb on - strand, within Psest_3459 at 3629.896 kb on - strand, within Psest_3459 at 3629.896 kb on - strand, within Psest_3459 at 3629.896 kb on - strand, within Psest_3459 at 3629.966 kb on - strand, within Psest_3459 at 3630.054 kb on + strand at 3630.054 kb on + strand at 3630.055 kb on - strand at 3630.320 kb on + strand, within Psest_3460 at 3630.320 kb on + strand, within Psest_3460 at 3630.674 kb on + strand, within Psest_3460 at 3630.674 kb on + strand, within Psest_3460 at 3630.675 kb on - strand, within Psest_3460 at 3630.842 kb on + strand, within Psest_3460 at 3630.842 kb on + strand, within Psest_3460 at 3630.842 kb on + strand, within Psest_3460 at 3630.842 kb on + strand, within Psest_3460 at 3630.842 kb on + strand at 3630.842 kb on + strand, within Psest_3460 at 3630.843 kb on - strand, within Psest_3460 at 3630.843 kb on - strand, within Psest_3460 at 3630.843 kb on - strand, within Psest_3460 at 3630.947 kb on + strand, within Psest_3460 at 3630.947 kb on + strand, within Psest_3460 at 3630.947 kb on + strand, within Psest_3460 at 3630.947 kb on + strand, within Psest_3460 at 3630.948 kb on - strand, within Psest_3460 at 3630.948 kb on - strand, within Psest_3460 at 3630.948 kb on - strand, within Psest_3460 at 3630.948 kb on - strand, within Psest_3460 at 3630.948 kb on - strand, within Psest_3460 at 3630.955 kb on - strand, within Psest_3460 at 3631.028 kb on + strand, within Psest_3460 at 3631.028 kb on + strand, within Psest_3460 at 3631.029 kb on - strand, within Psest_3460 at 3631.029 kb on - strand, within Psest_3460 at 3631.034 kb on + strand, within Psest_3460 at 3631.034 kb on + strand, within Psest_3460 at 3631.035 kb on - strand, within Psest_3460 at 3631.035 kb on - strand, within Psest_3460 at 3631.035 kb on - strand, within Psest_3460 at 3631.035 kb on - strand, within Psest_3460 at 3631.035 kb on - strand, within Psest_3460 at 3631.089 kb on + strand, within Psest_3460 at 3631.090 kb on - strand, within Psest_3460 at 3631.115 kb on + strand, within Psest_3460 at 3631.115 kb on + strand, within Psest_3460 at 3631.274 kb on + strand, within Psest_3460 at 3631.274 kb on + strand, within Psest_3460 at 3631.275 kb on - strand, within Psest_3460 at 3631.275 kb on - strand, within Psest_3460 at 3631.844 kb on + strand, within Psest_3460 at 3631.845 kb on - strand, within Psest_3460 at 3631.845 kb on - strand, within Psest_3460 at 3631.887 kb on - strand, within Psest_3460 at 3631.887 kb on - strand, within Psest_3460 at 3631.983 kb on + strand, within Psest_3460 at 3632.015 kb on + strand, within Psest_3460 at 3632.015 kb on + strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.105 kb on + strand at 3632.106 kb on - strand at 3632.106 kb on - strand at 3632.106 kb on - strand at 3632.965 kb on + strand, within Psest_3462 at 3632.969 kb on - strand, within Psest_3462 at 3632.969 kb on - strand, within Psest_3462 at 3633.076 kb on + strand, within Psest_3462 at 3633.076 kb on + strand, within Psest_3462 at 3633.076 kb on + strand, within Psest_3462 at 3633.076 kb on + strand, within Psest_3462 at 3633.076 kb on + strand, within Psest_3462 at 3633.077 kb on - strand, within Psest_3462 at 3633.077 kb on - strand, within Psest_3462 at 3633.077 kb on - strand, within Psest_3462 at 3633.077 kb on - strand, within Psest_3462
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 3,629,255 - Psest_3458 0.43 +1.1 3,629,358 + Psest_3458 0.66 +0.8 3,629,358 + Psest_3458 0.66 +2.1 3,629,358 + Psest_3458 0.66 +2.1 3,629,358 + Psest_3458 0.66 +1.1 3,629,359 - Psest_3458 0.66 +1.1 3,629,359 - Psest_3458 0.66 +2.1 3,629,359 - Psest_3458 0.66 +1.1 3,629,359 - Psest_3458 0.66 +1.1 3,629,359 - Psest_3458 0.66 -0.3 3,629,560 + +1.1 3,629,895 + Psest_3459 0.59 +0.5 3,629,895 + Psest_3459 0.59 +0.5 3,629,896 - Psest_3459 0.59 +0.5 3,629,896 - Psest_3459 0.59 +1.1 3,629,896 - Psest_3459 0.59 +0.5 3,629,896 - Psest_3459 0.59 +0.1 3,629,896 - Psest_3459 0.59 +2.1 3,629,896 - Psest_3459 0.59 +2.1 3,629,966 - Psest_3459 0.74 -0.6 3,630,054 + +1.1 3,630,054 + +2.5 3,630,055 - -0.7 3,630,320 + Psest_3460 0.10 -1.3 3,630,320 + Psest_3460 0.10 +2.1 3,630,674 + Psest_3460 0.27 +0.1 3,630,674 + Psest_3460 0.27 +1.1 3,630,675 - Psest_3460 0.27 +0.1 3,630,842 + Psest_3460 0.35 +2.1 3,630,842 + Psest_3460 0.35 +1.9 3,630,842 + Psest_3460 0.35 +0.3 3,630,842 + Psest_3460 0.35 +1.4 3,630,842 + +0.1 3,630,842 + Psest_3460 0.35 -1.0 3,630,843 - Psest_3460 0.35 -0.2 3,630,843 - Psest_3460 0.35 +2.1 3,630,843 - Psest_3460 0.35 -0.2 3,630,947 + Psest_3460 0.40 +0.1 3,630,947 + Psest_3460 0.40 -0.9 3,630,947 + Psest_3460 0.40 +0.1 3,630,947 + Psest_3460 0.40 -0.7 3,630,948 - Psest_3460 0.40 -1.0 3,630,948 - Psest_3460 0.40 -0.2 3,630,948 - Psest_3460 0.40 +1.4 3,630,948 - Psest_3460 0.40 +0.8 3,630,948 - Psest_3460 0.40 -0.2 3,630,955 - Psest_3460 0.40 -0.0 3,631,028 + Psest_3460 0.43 +3.1 3,631,028 + Psest_3460 0.43 +0.3 3,631,029 - Psest_3460 0.43 -0.5 3,631,029 - Psest_3460 0.43 -0.5 3,631,034 + Psest_3460 0.44 +0.7 3,631,034 + Psest_3460 0.44 +0.5 3,631,035 - Psest_3460 0.44 +1.1 3,631,035 - Psest_3460 0.44 -0.3 3,631,035 - Psest_3460 0.44 +0.7 3,631,035 - Psest_3460 0.44 +1.1 3,631,035 - Psest_3460 0.44 +2.5 3,631,089 + Psest_3460 0.46 +0.8 3,631,090 - Psest_3460 0.46 -1.3 3,631,115 + Psest_3460 0.47 +2.1 3,631,115 + Psest_3460 0.47 +0.1 3,631,274 + Psest_3460 0.55 -0.9 3,631,274 + Psest_3460 0.55 -0.4 3,631,275 - Psest_3460 0.55 -0.2 3,631,275 - Psest_3460 0.55 -1.5 3,631,844 + Psest_3460 0.82 +0.3 3,631,845 - Psest_3460 0.82 +2.1 3,631,845 - Psest_3460 0.82 +0.5 3,631,887 - Psest_3460 0.84 +1.1 3,631,887 - Psest_3460 0.84 +0.8 3,631,983 + Psest_3460 0.88 -0.5 3,632,015 + Psest_3460 0.90 -0.2 3,632,015 + Psest_3460 0.90 +1.1 3,632,016 - Psest_3460 0.90 -0.1 3,632,016 - Psest_3460 0.90 +1.1 3,632,016 - Psest_3460 0.90 +1.1 3,632,016 - Psest_3460 0.90 -0.0 3,632,016 - Psest_3460 0.90 -0.9 3,632,016 - Psest_3460 0.90 +0.5 3,632,016 - Psest_3460 0.90 +1.1 3,632,105 + +1.0 3,632,106 - +0.5 3,632,106 - +0.5 3,632,106 - +3.1 3,632,965 + Psest_3462 0.44 -0.6 3,632,969 - Psest_3462 0.44 +1.5 3,632,969 - Psest_3462 0.44 +0.7 3,633,076 + Psest_3462 0.59 -0.3 3,633,076 + Psest_3462 0.59 -0.6 3,633,076 + Psest_3462 0.59 +0.1 3,633,076 + Psest_3462 0.59 -0.2 3,633,076 + Psest_3462 0.59 +0.1 3,633,077 - Psest_3462 0.59 -0.7 3,633,077 - Psest_3462 0.59 +0.5 3,633,077 - Psest_3462 0.59 -1.5 3,633,077 - Psest_3462 0.59 +0.4
Or see this region's nucleotide sequence