Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3298

Experiment: Def Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3297 and Psest_3298 are separated by 111 nucleotidesPsest_3298 and Psest_3299 are separated by 169 nucleotidesPsest_3299 and Psest_3300 are separated by 178 nucleotides Psest_3297: Psest_3297 - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data), at 3,464,235 to 3,465,281 _3297 Psest_3298: Psest_3298 - histidinol dehydrogenase, at 3,465,393 to 3,466,703 _3298 Psest_3299: Psest_3299 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 3,466,873 to 3,467,505 _3299 Psest_3300: Psest_3300 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 3,467,684 to 3,468,949 _3300 Position (kb) 3465 3466 3467Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3464.500 kb on + strand, within Psest_3297at 3464.570 kb on + strand, within Psest_3297at 3464.571 kb on - strand, within Psest_3297at 3464.571 kb on - strand, within Psest_3297at 3464.676 kb on + strand, within Psest_3297at 3464.676 kb on + strand, within Psest_3297at 3464.676 kb on + strand, within Psest_3297at 3464.677 kb on - strand, within Psest_3297at 3464.731 kb on + strand, within Psest_3297at 3464.731 kb on + strand, within Psest_3297at 3464.731 kb on + strand, within Psest_3297at 3464.731 kb on + strand, within Psest_3297at 3464.731 kb on + strand, within Psest_3297at 3464.731 kb on + strand, within Psest_3297at 3464.731 kb on + strand, within Psest_3297at 3464.732 kb on - strand, within Psest_3297at 3464.732 kb on - strand, within Psest_3297at 3464.860 kb on + strand, within Psest_3297at 3464.861 kb on - strand, within Psest_3297at 3464.861 kb on - strand, within Psest_3297at 3464.909 kb on - strand, within Psest_3297at 3464.950 kb on + strand, within Psest_3297at 3464.951 kb on - strand, within Psest_3297at 3465.042 kb on + strand, within Psest_3297at 3465.042 kb on + strand, within Psest_3297at 3465.042 kb on + strand, within Psest_3297at 3465.042 kb on + strand, within Psest_3297at 3465.042 kb on + strand, within Psest_3297at 3465.042 kb on + strand, within Psest_3297at 3465.064 kb on + strand, within Psest_3297at 3465.065 kb on - strand, within Psest_3297at 3465.065 kb on - strand, within Psest_3297at 3465.068 kb on - strand, within Psest_3297at 3465.068 kb on - strand, within Psest_3297at 3465.112 kb on + strand, within Psest_3297at 3465.176 kb on - strand, within Psest_3297at 3465.238 kb on + strandat 3465.326 kb on + strandat 3465.327 kb on - strandat 3465.391 kb on + strandat 3465.391 kb on + strandat 3465.533 kb on - strand, within Psest_3298at 3465.533 kb on - strand, within Psest_3298at 3465.533 kb on - strand, within Psest_3298at 3465.579 kb on + strand, within Psest_3298at 3465.579 kb on + strand, within Psest_3298at 3465.580 kb on - strand, within Psest_3298at 3465.580 kb on - strand, within Psest_3298at 3465.602 kb on - strand, within Psest_3298at 3465.626 kb on - strand, within Psest_3298at 3465.783 kb on - strand, within Psest_3298at 3465.783 kb on - strand, within Psest_3298at 3465.788 kb on + strand, within Psest_3298at 3465.788 kb on + strand, within Psest_3298at 3465.788 kb on + strand, within Psest_3298at 3465.788 kb on + strand, within Psest_3298at 3465.789 kb on - strand, within Psest_3298at 3465.998 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.039 kb on + strand, within Psest_3298at 3466.040 kb on - strand, within Psest_3298at 3466.040 kb on - strand, within Psest_3298at 3466.040 kb on - strand, within Psest_3298at 3466.040 kb on - strand, within Psest_3298at 3466.040 kb on - strand, within Psest_3298at 3466.274 kb on - strand, within Psest_3298at 3466.297 kb on + strand, within Psest_3298at 3466.297 kb on + strand, within Psest_3298at 3466.297 kb on + strand, within Psest_3298at 3466.297 kb on + strand, within Psest_3298at 3466.297 kb on + strand, within Psest_3298at 3466.298 kb on - strand, within Psest_3298at 3466.298 kb on - strand, within Psest_3298at 3466.338 kb on + strand, within Psest_3298at 3466.360 kb on + strand, within Psest_3298at 3466.360 kb on + strand, within Psest_3298at 3466.361 kb on - strand, within Psest_3298at 3466.361 kb on - strand, within Psest_3298at 3466.393 kb on + strand, within Psest_3298at 3466.789 kb on + strandat 3466.790 kb on - strandat 3466.795 kb on - strandat 3466.832 kb on - strandat 3466.832 kb on - strandat 3466.832 kb on - strandat 3467.026 kb on - strand, within Psest_3299at 3467.026 kb on - strand, within Psest_3299at 3467.096 kb on + strand, within Psest_3299at 3467.097 kb on - strand, within Psest_3299at 3467.136 kb on - strand, within Psest_3299at 3467.136 kb on - strand, within Psest_3299at 3467.138 kb on + strand, within Psest_3299at 3467.138 kb on + strand, within Psest_3299at 3467.139 kb on - strand, within Psest_3299at 3467.258 kb on + strand, within Psest_3299at 3467.258 kb on + strand, within Psest_3299at 3467.258 kb on + strand, within Psest_3299at 3467.258 kb on + strand, within Psest_3299at 3467.258 kb on + strand, within Psest_3299at 3467.258 kb on + strand, within Psest_3299at 3467.259 kb on - strand, within Psest_3299at 3467.261 kb on - strand, within Psest_3299at 3467.276 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.333 kb on + strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.334 kb on - strand, within Psest_3299at 3467.337 kb on + strand, within Psest_3299at 3467.338 kb on - strand, within Psest_3299at 3467.338 kb on - strand, within Psest_3299at 3467.338 kb on - strand, within Psest_3299at 3467.385 kb on + strand, within Psest_3299at 3467.576 kb on + strandat 3467.576 kb on + strandat 3467.577 kb on - strandat 3467.616 kb on + strandat 3467.619 kb on + strandat 3467.619 kb on + strandat 3467.619 kb on + strandat 3467.626 kb on - strandat 3467.626 kb on - strandat 3467.626 kb on - strandat 3467.626 kb on - strandat 3467.626 kb on - strandat 3467.626 kb on - strandat 3467.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 20 mM
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3,464,500 + Psest_3297 0.25 -2.6
3,464,570 + Psest_3297 0.32 -3.3
3,464,571 - Psest_3297 0.32 -0.7
3,464,571 - Psest_3297 0.32 -2.2
3,464,676 + Psest_3297 0.42 -0.2
3,464,676 + Psest_3297 0.42 -1.4
3,464,676 + Psest_3297 0.42 -0.9
3,464,677 - Psest_3297 0.42 -1.4
3,464,731 + Psest_3297 0.47 -3.3
3,464,731 + Psest_3297 0.47 -2.4
3,464,731 + Psest_3297 0.47 -2.8
3,464,731 + Psest_3297 0.47 -3.5
3,464,731 + Psest_3297 0.47 -2.0
3,464,731 + Psest_3297 0.47 -0.7
3,464,731 + Psest_3297 0.47 -2.6
3,464,732 - Psest_3297 0.47 -2.8
3,464,732 - Psest_3297 0.47 +2.1
3,464,860 + Psest_3297 0.60 -1.1
3,464,861 - Psest_3297 0.60 -1.0
3,464,861 - Psest_3297 0.60 -0.6
3,464,909 - Psest_3297 0.64 -0.5
3,464,950 + Psest_3297 0.68 +0.1
3,464,951 - Psest_3297 0.68 +0.4
3,465,042 + Psest_3297 0.77 -1.8
3,465,042 + Psest_3297 0.77 -2.1
3,465,042 + Psest_3297 0.77 -0.5
3,465,042 + Psest_3297 0.77 -0.5
3,465,042 + Psest_3297 0.77 -2.0
3,465,042 + Psest_3297 0.77 -3.5
3,465,064 + Psest_3297 0.79 -1.4
3,465,065 - Psest_3297 0.79 -2.5
3,465,065 - Psest_3297 0.79 -2.1
3,465,068 - Psest_3297 0.80 -2.1
3,465,068 - Psest_3297 0.80 -0.7
3,465,112 + Psest_3297 0.84 -2.7
3,465,176 - Psest_3297 0.90 +2.1
3,465,238 + -2.1
3,465,326 + +0.2
3,465,327 - -1.1
3,465,391 + -1.2
3,465,391 + -1.0
3,465,533 - Psest_3298 0.11 -1.1
3,465,533 - Psest_3298 0.11 -3.8
3,465,533 - Psest_3298 0.11 -0.7
3,465,579 + Psest_3298 0.14 -2.3
3,465,579 + Psest_3298 0.14 -0.6
3,465,580 - Psest_3298 0.14 -0.2
3,465,580 - Psest_3298 0.14 -1.2
3,465,602 - Psest_3298 0.16 +1.1
3,465,626 - Psest_3298 0.18 -1.6
3,465,783 - Psest_3298 0.30 -0.5
3,465,783 - Psest_3298 0.30 -2.1
3,465,788 + Psest_3298 0.30 -3.6
3,465,788 + Psest_3298 0.30 -1.4
3,465,788 + Psest_3298 0.30 -1.8
3,465,788 + Psest_3298 0.30 -2.2
3,465,789 - Psest_3298 0.30 -0.7
3,465,998 + Psest_3298 0.46 -1.5
3,466,039 + Psest_3298 0.49 -3.6
3,466,039 + Psest_3298 0.49 -3.8
3,466,039 + Psest_3298 0.49 -0.9
3,466,039 + Psest_3298 0.49 -2.1
3,466,039 + Psest_3298 0.49 -1.6
3,466,039 + Psest_3298 0.49 -2.8
3,466,039 + Psest_3298 0.49 -2.7
3,466,040 - Psest_3298 0.49 -0.2
3,466,040 - Psest_3298 0.49 +1.1
3,466,040 - Psest_3298 0.49 -2.9
3,466,040 - Psest_3298 0.49 -2.5
3,466,040 - Psest_3298 0.49 -2.2
3,466,274 - Psest_3298 0.67 -1.7
3,466,297 + Psest_3298 0.69 -2.9
3,466,297 + Psest_3298 0.69 -5.7
3,466,297 + Psest_3298 0.69 -0.5
3,466,297 + Psest_3298 0.69 -1.6
3,466,297 + Psest_3298 0.69 -2.1
3,466,298 - Psest_3298 0.69 -2.3
3,466,298 - Psest_3298 0.69 -1.9
3,466,338 + Psest_3298 0.72 -1.9
3,466,360 + Psest_3298 0.74 -0.2
3,466,360 + Psest_3298 0.74 -2.3
3,466,361 - Psest_3298 0.74 -1.7
3,466,361 - Psest_3298 0.74 -3.8
3,466,393 + Psest_3298 0.76 -1.6
3,466,789 + -1.9
3,466,790 - +0.3
3,466,795 - -0.3
3,466,832 - -0.2
3,466,832 - -1.1
3,466,832 - -0.4
3,467,026 - Psest_3299 0.24 +2.1
3,467,026 - Psest_3299 0.24 -2.0
3,467,096 + Psest_3299 0.35 +0.5
3,467,097 - Psest_3299 0.35 -2.4
3,467,136 - Psest_3299 0.42 -2.8
3,467,136 - Psest_3299 0.42 -2.9
3,467,138 + Psest_3299 0.42 -2.0
3,467,138 + Psest_3299 0.42 -2.1
3,467,139 - Psest_3299 0.42 -1.1
3,467,258 + Psest_3299 0.61 -2.4
3,467,258 + Psest_3299 0.61 -1.2
3,467,258 + Psest_3299 0.61 -2.3
3,467,258 + Psest_3299 0.61 -3.1
3,467,258 + Psest_3299 0.61 -1.8
3,467,258 + Psest_3299 0.61 -3.4
3,467,259 - Psest_3299 0.61 -0.5
3,467,261 - Psest_3299 0.61 -3.6
3,467,276 + Psest_3299 0.64 -3.3
3,467,333 + Psest_3299 0.73 -4.1
3,467,333 + Psest_3299 0.73 -1.7
3,467,333 + Psest_3299 0.73 -0.7
3,467,333 + Psest_3299 0.73 -2.4
3,467,333 + Psest_3299 0.73 +0.5
3,467,333 + Psest_3299 0.73 -0.2
3,467,333 + Psest_3299 0.73 -1.1
3,467,333 + Psest_3299 0.73 -1.6
3,467,333 + Psest_3299 0.73 -1.6
3,467,333 + Psest_3299 0.73 -2.1
3,467,333 + Psest_3299 0.73 -1.1
3,467,333 + Psest_3299 0.73 -1.6
3,467,333 + Psest_3299 0.73 -3.0
3,467,334 - Psest_3299 0.73 -1.4
3,467,334 - Psest_3299 0.73 -1.5
3,467,334 - Psest_3299 0.73 +0.1
3,467,334 - Psest_3299 0.73 -1.1
3,467,334 - Psest_3299 0.73 -0.5
3,467,334 - Psest_3299 0.73 -2.2
3,467,334 - Psest_3299 0.73 -1.4
3,467,334 - Psest_3299 0.73 -2.8
3,467,334 - Psest_3299 0.73 -3.4
3,467,334 - Psest_3299 0.73 -0.5
3,467,334 - Psest_3299 0.73 -3.9
3,467,334 - Psest_3299 0.73 -4.0
3,467,334 - Psest_3299 0.73 -1.7
3,467,334 - Psest_3299 0.73 -3.1
3,467,334 - Psest_3299 0.73 -2.1
3,467,334 - Psest_3299 0.73 -1.6
3,467,334 - Psest_3299 0.73 -3.2
3,467,334 - Psest_3299 0.73 -2.8
3,467,334 - Psest_3299 0.73 -2.7
3,467,337 + Psest_3299 0.73 -1.1
3,467,338 - Psest_3299 0.73 -2.4
3,467,338 - Psest_3299 0.73 -3.7
3,467,338 - Psest_3299 0.73 -1.7
3,467,385 + Psest_3299 0.81 -2.3
3,467,576 + -1.7
3,467,576 + -2.4
3,467,577 - +0.1
3,467,616 + -0.2
3,467,619 + -3.8
3,467,619 + -0.4
3,467,619 + -1.7
3,467,626 - +1.0
3,467,626 - +0.5
3,467,626 - +0.3
3,467,626 - +0.1
3,467,626 - -0.6
3,467,626 - -1.7
3,467,626 - +0.0

Or see this region's nucleotide sequence