Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3122 and Psest_3123 are separated by 162 nucleotides Psest_3123 and Psest_3124 overlap by 4 nucleotides Psest_3124 and Psest_3125 are separated by 109 nucleotides
Psest_3122: Psest_3122 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 3,298,553 to 3,299,470
_3122
Psest_3123: Psest_3123 - dihydroorotase, homodimeric type, at 3,299,633 to 3,300,676
_3123
Psest_3124: Psest_3124 - ribonuclease T, at 3,300,673 to 3,301,347
_3124
Psest_3125: Psest_3125 - threonine synthase, at 3,301,457 to 3,302,866
_3125
Position (kb)
3299
3300
3301 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3298.758 kb on + strand, within Psest_3122 at 3298.759 kb on - strand, within Psest_3122 at 3298.844 kb on + strand, within Psest_3122 at 3298.845 kb on - strand, within Psest_3122 at 3298.845 kb on - strand, within Psest_3122 at 3298.845 kb on - strand, within Psest_3122 at 3298.889 kb on - strand, within Psest_3122 at 3298.993 kb on + strand, within Psest_3122 at 3299.056 kb on + strand, within Psest_3122 at 3299.056 kb on + strand, within Psest_3122 at 3299.057 kb on - strand, within Psest_3122 at 3299.492 kb on + strand at 3299.492 kb on + strand at 3299.492 kb on + strand at 3299.493 kb on - strand at 3299.501 kb on + strand at 3299.501 kb on + strand at 3299.502 kb on - strand at 3299.502 kb on - strand at 3299.502 kb on - strand at 3299.502 kb on - strand at 3299.502 kb on - strand at 3299.502 kb on - strand at 3299.861 kb on + strand, within Psest_3123 at 3299.861 kb on + strand, within Psest_3123 at 3300.108 kb on + strand, within Psest_3123 at 3300.108 kb on + strand, within Psest_3123 at 3300.431 kb on + strand, within Psest_3123 at 3300.433 kb on + strand, within Psest_3123 at 3300.434 kb on - strand, within Psest_3123 at 3300.458 kb on + strand, within Psest_3123 at 3300.458 kb on + strand, within Psest_3123 at 3300.458 kb on + strand, within Psest_3123 at 3300.459 kb on - strand, within Psest_3123 at 3300.550 kb on + strand, within Psest_3123 at 3301.016 kb on + strand, within Psest_3124 at 3301.016 kb on + strand, within Psest_3124
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 3,298,758 + Psest_3122 0.22 -0.8 3,298,759 - Psest_3122 0.22 -0.5 3,298,844 + Psest_3122 0.32 -0.1 3,298,845 - Psest_3122 0.32 +0.1 3,298,845 - Psest_3122 0.32 -0.2 3,298,845 - Psest_3122 0.32 +1.9 3,298,889 - Psest_3122 0.37 -0.2 3,298,993 + Psest_3122 0.48 +1.1 3,299,056 + Psest_3122 0.55 -0.5 3,299,056 + Psest_3122 0.55 -0.4 3,299,057 - Psest_3122 0.55 +0.3 3,299,492 + +1.8 3,299,492 + -0.9 3,299,492 + -0.7 3,299,493 - +1.2 3,299,501 + -0.5 3,299,501 + -0.7 3,299,502 - +0.0 3,299,502 - +1.9 3,299,502 - -2.0 3,299,502 - -1.8 3,299,502 - +0.1 3,299,502 - -0.8 3,299,861 + Psest_3123 0.22 -0.6 3,299,861 + Psest_3123 0.22 -1.5 3,300,108 + Psest_3123 0.45 -0.7 3,300,108 + Psest_3123 0.45 -1.5 3,300,431 + Psest_3123 0.76 -2.0 3,300,433 + Psest_3123 0.77 -0.5 3,300,434 - Psest_3123 0.77 -1.1 3,300,458 + Psest_3123 0.79 -0.9 3,300,458 + Psest_3123 0.79 -0.5 3,300,458 + Psest_3123 0.79 +0.1 3,300,459 - Psest_3123 0.79 -1.5 3,300,550 + Psest_3123 0.88 -0.9 3,301,016 + Psest_3124 0.51 +2.7 3,301,016 + Psest_3124 0.51 +1.2
Or see this region's nucleotide sequence