Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3123

Experiment: Def Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3122 and Psest_3123 are separated by 162 nucleotidesPsest_3123 and Psest_3124 overlap by 4 nucleotidesPsest_3124 and Psest_3125 are separated by 109 nucleotides Psest_3122: Psest_3122 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 3,298,553 to 3,299,470 _3122 Psest_3123: Psest_3123 - dihydroorotase, homodimeric type, at 3,299,633 to 3,300,676 _3123 Psest_3124: Psest_3124 - ribonuclease T, at 3,300,673 to 3,301,347 _3124 Psest_3125: Psest_3125 - threonine synthase, at 3,301,457 to 3,302,866 _3125 Position (kb) 3299 3300 3301Strain fitness (log2 ratio) -2 -1 0 1 2at 3298.758 kb on + strand, within Psest_3122at 3298.759 kb on - strand, within Psest_3122at 3298.844 kb on + strand, within Psest_3122at 3298.845 kb on - strand, within Psest_3122at 3298.845 kb on - strand, within Psest_3122at 3298.845 kb on - strand, within Psest_3122at 3298.889 kb on - strand, within Psest_3122at 3298.993 kb on + strand, within Psest_3122at 3299.056 kb on + strand, within Psest_3122at 3299.056 kb on + strand, within Psest_3122at 3299.057 kb on - strand, within Psest_3122at 3299.492 kb on + strandat 3299.492 kb on + strandat 3299.492 kb on + strandat 3299.493 kb on - strandat 3299.501 kb on + strandat 3299.501 kb on + strandat 3299.502 kb on - strandat 3299.502 kb on - strandat 3299.502 kb on - strandat 3299.502 kb on - strandat 3299.502 kb on - strandat 3299.502 kb on - strandat 3299.861 kb on + strand, within Psest_3123at 3299.861 kb on + strand, within Psest_3123at 3300.108 kb on + strand, within Psest_3123at 3300.108 kb on + strand, within Psest_3123at 3300.431 kb on + strand, within Psest_3123at 3300.433 kb on + strand, within Psest_3123at 3300.434 kb on - strand, within Psest_3123at 3300.458 kb on + strand, within Psest_3123at 3300.458 kb on + strand, within Psest_3123at 3300.458 kb on + strand, within Psest_3123at 3300.459 kb on - strand, within Psest_3123at 3300.550 kb on + strand, within Psest_3123at 3301.016 kb on + strand, within Psest_3124at 3301.016 kb on + strand, within Psest_3124

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 20 mM
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3,298,758 + Psest_3122 0.22 -0.8
3,298,759 - Psest_3122 0.22 -0.5
3,298,844 + Psest_3122 0.32 -0.1
3,298,845 - Psest_3122 0.32 +0.1
3,298,845 - Psest_3122 0.32 -0.2
3,298,845 - Psest_3122 0.32 +1.9
3,298,889 - Psest_3122 0.37 -0.2
3,298,993 + Psest_3122 0.48 +1.1
3,299,056 + Psest_3122 0.55 -0.5
3,299,056 + Psest_3122 0.55 -0.4
3,299,057 - Psest_3122 0.55 +0.3
3,299,492 + +1.8
3,299,492 + -0.9
3,299,492 + -0.7
3,299,493 - +1.2
3,299,501 + -0.5
3,299,501 + -0.7
3,299,502 - +0.0
3,299,502 - +1.9
3,299,502 - -2.0
3,299,502 - -1.8
3,299,502 - +0.1
3,299,502 - -0.8
3,299,861 + Psest_3123 0.22 -0.6
3,299,861 + Psest_3123 0.22 -1.5
3,300,108 + Psest_3123 0.45 -0.7
3,300,108 + Psest_3123 0.45 -1.5
3,300,431 + Psest_3123 0.76 -2.0
3,300,433 + Psest_3123 0.77 -0.5
3,300,434 - Psest_3123 0.77 -1.1
3,300,458 + Psest_3123 0.79 -0.9
3,300,458 + Psest_3123 0.79 -0.5
3,300,458 + Psest_3123 0.79 +0.1
3,300,459 - Psest_3123 0.79 -1.5
3,300,550 + Psest_3123 0.88 -0.9
3,301,016 + Psest_3124 0.51 +2.7
3,301,016 + Psest_3124 0.51 +1.2

Or see this region's nucleotide sequence