Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2731

Experiment: Def Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2730 and Psest_2731 are separated by 708 nucleotidesPsest_2731 and Psest_2732 are separated by 300 nucleotides Psest_2730: Psest_2730 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 2,918,857 to 2,919,573 _2730 Psest_2731: Psest_2731 - ribonucleoside-diphosphate reductase, alpha subunit, at 2,920,282 to 2,923,164 _2731 Psest_2732: Psest_2732 - Ribonucleotide reductase, beta subunit, at 2,923,465 to 2,924,712 _2732 Position (kb) 2920 2921 2922 2923 2924Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2919.504 kb on - strandat 2919.504 kb on - strandat 2919.624 kb on + strandat 2919.706 kb on + strandat 2919.723 kb on - strandat 2919.723 kb on - strandat 2919.723 kb on - strandat 2919.723 kb on - strandat 2919.723 kb on - strandat 2919.734 kb on - strandat 2919.857 kb on + strandat 2919.857 kb on + strandat 2919.857 kb on + strandat 2919.858 kb on - strandat 2919.858 kb on - strandat 2919.881 kb on - strandat 2919.887 kb on + strandat 2919.962 kb on + strandat 2919.963 kb on - strandat 2919.963 kb on - strandat 2920.000 kb on + strandat 2920.046 kb on + strandat 2920.046 kb on + strandat 2920.047 kb on - strandat 2920.083 kb on - strandat 2920.083 kb on - strandat 2920.130 kb on + strandat 2923.230 kb on + strandat 2923.230 kb on + strandat 2923.230 kb on + strandat 2923.230 kb on + strandat 2923.230 kb on + strandat 2923.230 kb on + strandat 2923.238 kb on + strandat 2923.238 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 20 mM
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2,919,504 - -1.0
2,919,504 - +2.4
2,919,624 + -0.2
2,919,706 + +0.3
2,919,723 - +0.5
2,919,723 - +3.1
2,919,723 - -0.9
2,919,723 - +0.6
2,919,723 - -2.3
2,919,734 - -0.1
2,919,857 + +1.1
2,919,857 + -1.3
2,919,857 + +0.2
2,919,858 - +1.0
2,919,858 - -1.5
2,919,881 - -0.6
2,919,887 + -1.2
2,919,962 + -0.5
2,919,963 - +0.3
2,919,963 - +0.6
2,920,000 + +0.3
2,920,046 + +0.8
2,920,046 + +0.5
2,920,047 - -1.5
2,920,083 - +0.1
2,920,083 - -0.7
2,920,130 + -0.3
2,923,230 + +0.9
2,923,230 + -0.4
2,923,230 + +0.1
2,923,230 + -0.4
2,923,230 + +1.2
2,923,230 + -0.5
2,923,238 + -2.2
2,923,238 + -1.4

Or see this region's nucleotide sequence