Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2730 and Psest_2731 are separated by 708 nucleotides Psest_2731 and Psest_2732 are separated by 300 nucleotides
Psest_2730: Psest_2730 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 2,918,857 to 2,919,573
_2730
Psest_2731: Psest_2731 - ribonucleoside-diphosphate reductase, alpha subunit, at 2,920,282 to 2,923,164
_2731
Psest_2732: Psest_2732 - Ribonucleotide reductase, beta subunit, at 2,923,465 to 2,924,712
_2732
Position (kb)
2920
2921
2922
2923
2924 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2919.504 kb on - strand at 2919.504 kb on - strand at 2919.624 kb on + strand at 2919.706 kb on + strand at 2919.723 kb on - strand at 2919.723 kb on - strand at 2919.723 kb on - strand at 2919.723 kb on - strand at 2919.723 kb on - strand at 2919.734 kb on - strand at 2919.857 kb on + strand at 2919.857 kb on + strand at 2919.857 kb on + strand at 2919.858 kb on - strand at 2919.858 kb on - strand at 2919.881 kb on - strand at 2919.887 kb on + strand at 2919.962 kb on + strand at 2919.963 kb on - strand at 2919.963 kb on - strand at 2920.000 kb on + strand at 2920.046 kb on + strand at 2920.046 kb on + strand at 2920.047 kb on - strand at 2920.083 kb on - strand at 2920.083 kb on - strand at 2920.130 kb on + strand at 2923.230 kb on + strand at 2923.230 kb on + strand at 2923.230 kb on + strand at 2923.230 kb on + strand at 2923.230 kb on + strand at 2923.230 kb on + strand at 2923.238 kb on + strand at 2923.238 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 2,919,504 - -1.0 2,919,504 - +2.4 2,919,624 + -0.2 2,919,706 + +0.3 2,919,723 - +0.5 2,919,723 - +3.1 2,919,723 - -0.9 2,919,723 - +0.6 2,919,723 - -2.3 2,919,734 - -0.1 2,919,857 + +1.1 2,919,857 + -1.3 2,919,857 + +0.2 2,919,858 - +1.0 2,919,858 - -1.5 2,919,881 - -0.6 2,919,887 + -1.2 2,919,962 + -0.5 2,919,963 - +0.3 2,919,963 - +0.6 2,920,000 + +0.3 2,920,046 + +0.8 2,920,046 + +0.5 2,920,047 - -1.5 2,920,083 - +0.1 2,920,083 - -0.7 2,920,130 + -0.3 2,923,230 + +0.9 2,923,230 + -0.4 2,923,230 + +0.1 2,923,230 + -0.4 2,923,230 + +1.2 2,923,230 + -0.5 2,923,238 + -2.2 2,923,238 + -1.4
Or see this region's nucleotide sequence