Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2527 and Psest_2528 are separated by 12 nucleotides Psest_2528 and Psest_2529 are separated by 3 nucleotides Psest_2529 and Psest_2530 are separated by 0 nucleotides
Psest_2527: Psest_2527 - cytochrome c oxidase, cbb3-type, subunit I, at 2,707,885 to 2,709,312
_2527
Psest_2528: Psest_2528 - cytochrome c oxidase, cbb3-type, subunit II, at 2,709,325 to 2,709,936
_2528
Psest_2529: Psest_2529 - Cbb3-type cytochrome oxidase, subunit 3, at 2,709,940 to 2,710,128
_2529
Psest_2530: Psest_2530 - cytochrome c oxidase, cbb3-type, subunit III, at 2,710,129 to 2,711,046
_2530
Position (kb)
2709
2710 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2708.359 kb on + strand, within Psest_2527 at 2708.359 kb on + strand, within Psest_2527 at 2708.359 kb on + strand, within Psest_2527 at 2708.359 kb on + strand, within Psest_2527 at 2708.359 kb on + strand, within Psest_2527 at 2708.359 kb on + strand, within Psest_2527 at 2708.359 kb on + strand, within Psest_2527 at 2708.359 kb on + strand, within Psest_2527 at 2708.359 kb on + strand, within Psest_2527 at 2708.359 kb on + strand, within Psest_2527 at 2708.359 kb on + strand, within Psest_2527 at 2708.359 kb on + strand, within Psest_2527 at 2708.360 kb on - strand, within Psest_2527 at 2708.360 kb on - strand, within Psest_2527 at 2708.360 kb on - strand, within Psest_2527 at 2708.554 kb on + strand, within Psest_2527 at 2708.554 kb on + strand, within Psest_2527 at 2708.554 kb on + strand, within Psest_2527 at 2708.554 kb on + strand, within Psest_2527 at 2708.554 kb on + strand, within Psest_2527 at 2708.555 kb on - strand, within Psest_2527 at 2708.555 kb on - strand, within Psest_2527 at 2708.555 kb on - strand, within Psest_2527 at 2708.557 kb on + strand, within Psest_2527 at 2708.557 kb on + strand, within Psest_2527 at 2708.558 kb on - strand, within Psest_2527 at 2708.639 kb on - strand, within Psest_2527 at 2708.639 kb on - strand, within Psest_2527 at 2708.639 kb on - strand, within Psest_2527 at 2708.639 kb on - strand, within Psest_2527 at 2708.925 kb on - strand, within Psest_2527 at 2708.975 kb on - strand, within Psest_2527 at 2709.070 kb on + strand, within Psest_2527 at 2709.149 kb on - strand, within Psest_2527 at 2709.149 kb on - strand, within Psest_2527 at 2709.244 kb on + strand at 2709.322 kb on + strand at 2709.323 kb on - strand at 2709.341 kb on + strand at 2709.701 kb on - strand, within Psest_2528 at 2709.824 kb on - strand, within Psest_2528 at 2709.905 kb on + strand at 2710.126 kb on + strand at 2710.150 kb on + strand at 2710.150 kb on + strand at 2710.150 kb on + strand at 2710.277 kb on - strand, within Psest_2530 at 2710.416 kb on - strand, within Psest_2530 at 2710.469 kb on - strand, within Psest_2530 at 2710.469 kb on - strand, within Psest_2530 at 2710.478 kb on - strand, within Psest_2530 at 2710.478 kb on - strand, within Psest_2530 at 2710.478 kb on - strand, within Psest_2530 at 2710.739 kb on - strand, within Psest_2530 at 2710.826 kb on + strand, within Psest_2530 at 2710.826 kb on + strand, within Psest_2530 at 2710.827 kb on - strand, within Psest_2530 at 2710.892 kb on + strand, within Psest_2530 at 2710.892 kb on + strand, within Psest_2530 at 2710.892 kb on + strand, within Psest_2530 at 2710.892 kb on + strand, within Psest_2530 at 2710.892 kb on + strand, within Psest_2530 at 2710.892 kb on + strand, within Psest_2530 at 2710.892 kb on + strand, within Psest_2530 at 2710.892 kb on + strand, within Psest_2530 at 2710.892 kb on + strand, within Psest_2530 at 2710.893 kb on - strand, within Psest_2530 at 2710.893 kb on - strand, within Psest_2530 at 2710.893 kb on - strand, within Psest_2530 at 2710.900 kb on + strand, within Psest_2530
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 2,708,359 + Psest_2527 0.33 -2.1 2,708,359 + Psest_2527 0.33 -2.5 2,708,359 + Psest_2527 0.33 -2.4 2,708,359 + Psest_2527 0.33 -3.7 2,708,359 + Psest_2527 0.33 -1.9 2,708,359 + Psest_2527 0.33 -2.2 2,708,359 + Psest_2527 0.33 -2.4 2,708,359 + Psest_2527 0.33 -1.8 2,708,359 + Psest_2527 0.33 -1.5 2,708,359 + Psest_2527 0.33 -2.2 2,708,359 + Psest_2527 0.33 -1.6 2,708,359 + Psest_2527 0.33 -0.3 2,708,360 - Psest_2527 0.33 -2.7 2,708,360 - Psest_2527 0.33 -2.5 2,708,360 - Psest_2527 0.33 -2.6 2,708,554 + Psest_2527 0.47 -1.8 2,708,554 + Psest_2527 0.47 -0.9 2,708,554 + Psest_2527 0.47 -3.0 2,708,554 + Psest_2527 0.47 -0.9 2,708,554 + Psest_2527 0.47 -1.4 2,708,555 - Psest_2527 0.47 -1.9 2,708,555 - Psest_2527 0.47 -2.2 2,708,555 - Psest_2527 0.47 -1.9 2,708,557 + Psest_2527 0.47 -1.8 2,708,557 + Psest_2527 0.47 -2.3 2,708,558 - Psest_2527 0.47 -0.9 2,708,639 - Psest_2527 0.53 -0.3 2,708,639 - Psest_2527 0.53 -2.4 2,708,639 - Psest_2527 0.53 -0.5 2,708,639 - Psest_2527 0.53 -0.9 2,708,925 - Psest_2527 0.73 -2.3 2,708,975 - Psest_2527 0.76 -1.3 2,709,070 + Psest_2527 0.83 -1.4 2,709,149 - Psest_2527 0.89 -2.2 2,709,149 - Psest_2527 0.89 -2.4 2,709,244 + -1.3 2,709,322 + -0.8 2,709,323 - -1.8 2,709,341 + -1.6 2,709,701 - Psest_2528 0.61 -0.5 2,709,824 - Psest_2528 0.82 -0.9 2,709,905 + -2.3 2,710,126 + -1.1 2,710,150 + -0.3 2,710,150 + -2.3 2,710,150 + -2.2 2,710,277 - Psest_2530 0.16 -1.8 2,710,416 - Psest_2530 0.31 -3.1 2,710,469 - Psest_2530 0.37 -2.0 2,710,469 - Psest_2530 0.37 -0.9 2,710,478 - Psest_2530 0.38 -2.2 2,710,478 - Psest_2530 0.38 -1.9 2,710,478 - Psest_2530 0.38 -3.4 2,710,739 - Psest_2530 0.66 -1.1 2,710,826 + Psest_2530 0.76 -1.1 2,710,826 + Psest_2530 0.76 -0.5 2,710,827 - Psest_2530 0.76 -3.5 2,710,892 + Psest_2530 0.83 -0.9 2,710,892 + Psest_2530 0.83 -1.5 2,710,892 + Psest_2530 0.83 -1.4 2,710,892 + Psest_2530 0.83 -0.5 2,710,892 + Psest_2530 0.83 -2.6 2,710,892 + Psest_2530 0.83 +0.1 2,710,892 + Psest_2530 0.83 -1.8 2,710,892 + Psest_2530 0.83 -0.9 2,710,892 + Psest_2530 0.83 -0.3 2,710,893 - Psest_2530 0.83 -3.2 2,710,893 - Psest_2530 0.83 -1.2 2,710,893 - Psest_2530 0.83 -1.9 2,710,900 + Psest_2530 0.84 -1.4
Or see this region's nucleotide sequence