Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2528

Experiment: Def Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2527 and Psest_2528 are separated by 12 nucleotidesPsest_2528 and Psest_2529 are separated by 3 nucleotidesPsest_2529 and Psest_2530 are separated by 0 nucleotides Psest_2527: Psest_2527 - cytochrome c oxidase, cbb3-type, subunit I, at 2,707,885 to 2,709,312 _2527 Psest_2528: Psest_2528 - cytochrome c oxidase, cbb3-type, subunit II, at 2,709,325 to 2,709,936 _2528 Psest_2529: Psest_2529 - Cbb3-type cytochrome oxidase, subunit 3, at 2,709,940 to 2,710,128 _2529 Psest_2530: Psest_2530 - cytochrome c oxidase, cbb3-type, subunit III, at 2,710,129 to 2,711,046 _2530 Position (kb) 2709 2710Strain fitness (log2 ratio) -3 -2 -1 0 1at 2708.359 kb on + strand, within Psest_2527at 2708.359 kb on + strand, within Psest_2527at 2708.359 kb on + strand, within Psest_2527at 2708.359 kb on + strand, within Psest_2527at 2708.359 kb on + strand, within Psest_2527at 2708.359 kb on + strand, within Psest_2527at 2708.359 kb on + strand, within Psest_2527at 2708.359 kb on + strand, within Psest_2527at 2708.359 kb on + strand, within Psest_2527at 2708.359 kb on + strand, within Psest_2527at 2708.359 kb on + strand, within Psest_2527at 2708.359 kb on + strand, within Psest_2527at 2708.360 kb on - strand, within Psest_2527at 2708.360 kb on - strand, within Psest_2527at 2708.360 kb on - strand, within Psest_2527at 2708.554 kb on + strand, within Psest_2527at 2708.554 kb on + strand, within Psest_2527at 2708.554 kb on + strand, within Psest_2527at 2708.554 kb on + strand, within Psest_2527at 2708.554 kb on + strand, within Psest_2527at 2708.555 kb on - strand, within Psest_2527at 2708.555 kb on - strand, within Psest_2527at 2708.555 kb on - strand, within Psest_2527at 2708.557 kb on + strand, within Psest_2527at 2708.557 kb on + strand, within Psest_2527at 2708.558 kb on - strand, within Psest_2527at 2708.639 kb on - strand, within Psest_2527at 2708.639 kb on - strand, within Psest_2527at 2708.639 kb on - strand, within Psest_2527at 2708.639 kb on - strand, within Psest_2527at 2708.925 kb on - strand, within Psest_2527at 2708.975 kb on - strand, within Psest_2527at 2709.070 kb on + strand, within Psest_2527at 2709.149 kb on - strand, within Psest_2527at 2709.149 kb on - strand, within Psest_2527at 2709.244 kb on + strandat 2709.322 kb on + strandat 2709.323 kb on - strandat 2709.341 kb on + strandat 2709.701 kb on - strand, within Psest_2528at 2709.824 kb on - strand, within Psest_2528at 2709.905 kb on + strandat 2710.126 kb on + strandat 2710.150 kb on + strandat 2710.150 kb on + strandat 2710.150 kb on + strandat 2710.277 kb on - strand, within Psest_2530at 2710.416 kb on - strand, within Psest_2530at 2710.469 kb on - strand, within Psest_2530at 2710.469 kb on - strand, within Psest_2530at 2710.478 kb on - strand, within Psest_2530at 2710.478 kb on - strand, within Psest_2530at 2710.478 kb on - strand, within Psest_2530at 2710.739 kb on - strand, within Psest_2530at 2710.826 kb on + strand, within Psest_2530at 2710.826 kb on + strand, within Psest_2530at 2710.827 kb on - strand, within Psest_2530at 2710.892 kb on + strand, within Psest_2530at 2710.892 kb on + strand, within Psest_2530at 2710.892 kb on + strand, within Psest_2530at 2710.892 kb on + strand, within Psest_2530at 2710.892 kb on + strand, within Psest_2530at 2710.892 kb on + strand, within Psest_2530at 2710.892 kb on + strand, within Psest_2530at 2710.892 kb on + strand, within Psest_2530at 2710.892 kb on + strand, within Psest_2530at 2710.893 kb on - strand, within Psest_2530at 2710.893 kb on - strand, within Psest_2530at 2710.893 kb on - strand, within Psest_2530at 2710.900 kb on + strand, within Psest_2530

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 20 mM
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2,708,359 + Psest_2527 0.33 -2.1
2,708,359 + Psest_2527 0.33 -2.5
2,708,359 + Psest_2527 0.33 -2.4
2,708,359 + Psest_2527 0.33 -3.7
2,708,359 + Psest_2527 0.33 -1.9
2,708,359 + Psest_2527 0.33 -2.2
2,708,359 + Psest_2527 0.33 -2.4
2,708,359 + Psest_2527 0.33 -1.8
2,708,359 + Psest_2527 0.33 -1.5
2,708,359 + Psest_2527 0.33 -2.2
2,708,359 + Psest_2527 0.33 -1.6
2,708,359 + Psest_2527 0.33 -0.3
2,708,360 - Psest_2527 0.33 -2.7
2,708,360 - Psest_2527 0.33 -2.5
2,708,360 - Psest_2527 0.33 -2.6
2,708,554 + Psest_2527 0.47 -1.8
2,708,554 + Psest_2527 0.47 -0.9
2,708,554 + Psest_2527 0.47 -3.0
2,708,554 + Psest_2527 0.47 -0.9
2,708,554 + Psest_2527 0.47 -1.4
2,708,555 - Psest_2527 0.47 -1.9
2,708,555 - Psest_2527 0.47 -2.2
2,708,555 - Psest_2527 0.47 -1.9
2,708,557 + Psest_2527 0.47 -1.8
2,708,557 + Psest_2527 0.47 -2.3
2,708,558 - Psest_2527 0.47 -0.9
2,708,639 - Psest_2527 0.53 -0.3
2,708,639 - Psest_2527 0.53 -2.4
2,708,639 - Psest_2527 0.53 -0.5
2,708,639 - Psest_2527 0.53 -0.9
2,708,925 - Psest_2527 0.73 -2.3
2,708,975 - Psest_2527 0.76 -1.3
2,709,070 + Psest_2527 0.83 -1.4
2,709,149 - Psest_2527 0.89 -2.2
2,709,149 - Psest_2527 0.89 -2.4
2,709,244 + -1.3
2,709,322 + -0.8
2,709,323 - -1.8
2,709,341 + -1.6
2,709,701 - Psest_2528 0.61 -0.5
2,709,824 - Psest_2528 0.82 -0.9
2,709,905 + -2.3
2,710,126 + -1.1
2,710,150 + -0.3
2,710,150 + -2.3
2,710,150 + -2.2
2,710,277 - Psest_2530 0.16 -1.8
2,710,416 - Psest_2530 0.31 -3.1
2,710,469 - Psest_2530 0.37 -2.0
2,710,469 - Psest_2530 0.37 -0.9
2,710,478 - Psest_2530 0.38 -2.2
2,710,478 - Psest_2530 0.38 -1.9
2,710,478 - Psest_2530 0.38 -3.4
2,710,739 - Psest_2530 0.66 -1.1
2,710,826 + Psest_2530 0.76 -1.1
2,710,826 + Psest_2530 0.76 -0.5
2,710,827 - Psest_2530 0.76 -3.5
2,710,892 + Psest_2530 0.83 -0.9
2,710,892 + Psest_2530 0.83 -1.5
2,710,892 + Psest_2530 0.83 -1.4
2,710,892 + Psest_2530 0.83 -0.5
2,710,892 + Psest_2530 0.83 -2.6
2,710,892 + Psest_2530 0.83 +0.1
2,710,892 + Psest_2530 0.83 -1.8
2,710,892 + Psest_2530 0.83 -0.9
2,710,892 + Psest_2530 0.83 -0.3
2,710,893 - Psest_2530 0.83 -3.2
2,710,893 - Psest_2530 0.83 -1.2
2,710,893 - Psest_2530 0.83 -1.9
2,710,900 + Psest_2530 0.84 -1.4

Or see this region's nucleotide sequence