Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2496

Experiment: Def Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2495 and Psest_2496 are separated by 10 nucleotidesPsest_2496 and Psest_2497 are separated by 3 nucleotidesPsest_2497 and Psest_2498 overlap by 7 nucleotides Psest_2495: Psest_2495 - succinate dehydrogenase and fumarate reductase iron-sulfur protein, at 2,671,401 to 2,672,105 _2495 Psest_2496: Psest_2496 - succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup, at 2,672,116 to 2,673,888 _2496 Psest_2497: Psest_2497 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 2,673,892 to 2,674,260 _2497 Psest_2498: Psest_2498 - succinate dehydrogenase, cytochrome b556 subunit, at 2,674,254 to 2,674,628 _2498 Position (kb) 2672 2673 2674Strain fitness (log2 ratio) -2 -1 0 1 2at 2671.347 kb on - strandat 2674.728 kb on - strandat 2674.764 kb on - strandat 2674.766 kb on - strandat 2674.766 kb on - strandat 2674.774 kb on - strandat 2674.774 kb on - strandat 2674.774 kb on - strandat 2674.774 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.829 kb on - strandat 2674.829 kb on - strandat 2674.829 kb on - strandat 2674.829 kb on - strandat 2674.830 kb on + strandat 2674.830 kb on + strandat 2674.830 kb on + strandat 2674.830 kb on + strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.860 kb on - strandat 2674.860 kb on - strandat 2674.860 kb on - strandat 2674.860 kb on - strandat 2674.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 20 mM
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2,671,347 - -2.5
2,674,728 - -1.1
2,674,764 - -2.1
2,674,766 - -0.6
2,674,766 - -0.0
2,674,774 - +0.0
2,674,774 - -0.3
2,674,774 - -0.4
2,674,774 - -0.4
2,674,827 - +1.5
2,674,827 - +2.0
2,674,827 - -0.5
2,674,827 - -2.5
2,674,827 - +0.7
2,674,827 - +2.3
2,674,827 - -0.3
2,674,827 - -0.2
2,674,829 - +1.3
2,674,829 - +0.9
2,674,829 - +0.1
2,674,829 - +0.8
2,674,830 + -1.0
2,674,830 + -0.8
2,674,830 + -0.3
2,674,830 + -0.5
2,674,831 - -0.9
2,674,831 - +2.0
2,674,831 - +0.1
2,674,831 - +1.6
2,674,831 - +1.0
2,674,831 - +0.0
2,674,831 - +0.7
2,674,831 - +0.8
2,674,831 - +1.3
2,674,831 - +0.7
2,674,831 - +0.5
2,674,831 - +0.8
2,674,831 - +0.8
2,674,831 - +1.0
2,674,831 - +0.8
2,674,831 - +0.3
2,674,860 - -0.5
2,674,860 - -0.1
2,674,860 - +1.3
2,674,860 - +1.6
2,674,884 - -1.3

Or see this region's nucleotide sequence