Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2377

Experiment: Def Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2373 and Psest_2374 overlap by 1 nucleotidesPsest_2374 and Psest_2375 overlap by 1 nucleotidesPsest_2375 and Psest_2376 overlap by 4 nucleotidesPsest_2376 and Psest_2377 overlap by 4 nucleotidesPsest_2377 and Psest_2378 are separated by 82 nucleotides Psest_2373: Psest_2373 - sulfur relay protein TusD/DsrE, at 2,525,516 to 2,525,908 _2373 Psest_2374: Psest_2374 - sulfur relay protein TusC/DsrF, at 2,525,908 to 2,526,267 _2374 Psest_2375: Psest_2375 - sulfur relay protein TusB/DsrH, at 2,526,267 to 2,526,569 _2375 Psest_2376: Psest_2376 - sulfur relay protein, TusE/DsrC/DsvC family, at 2,526,566 to 2,526,898 _2376 Psest_2377: Psest_2377 - Anthranilate phosphoribosyltransferase, at 2,526,895 to 2,527,878 _2377 Psest_2378: Psest_2378 - Predicted glutathione S-transferase, at 2,527,961 to 2,528,980 _2378 Position (kb) 2526 2527 2528Strain fitness (log2 ratio) -2 -1 0 1 2at 2527.009 kb on - strand, within Psest_2377at 2527.169 kb on - strand, within Psest_2377at 2527.199 kb on - strand, within Psest_2377at 2527.199 kb on - strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.876 kb on + strandat 2527.876 kb on + strandat 2527.877 kb on - strandat 2527.911 kb on - strandat 2527.928 kb on + strandat 2527.929 kb on - strandat 2527.974 kb on + strandat 2527.974 kb on + strandat 2527.974 kb on + strandat 2527.975 kb on - strandat 2527.975 kb on - strandat 2527.975 kb on - strandat 2527.975 kb on - strandat 2527.975 kb on - strandat 2528.126 kb on + strand, within Psest_2378at 2528.126 kb on + strand, within Psest_2378at 2528.126 kb on + strand, within Psest_2378at 2528.126 kb on + strand, within Psest_2378at 2528.126 kb on + strand, within Psest_2378at 2528.126 kb on + strand, within Psest_2378at 2528.126 kb on + strand, within Psest_2378at 2528.126 kb on + strand, within Psest_2378at 2528.127 kb on - strand, within Psest_2378at 2528.127 kb on - strand, within Psest_2378at 2528.127 kb on - strand, within Psest_2378at 2528.295 kb on - strand, within Psest_2378at 2528.309 kb on + strand, within Psest_2378at 2528.312 kb on - strand, within Psest_2378at 2528.312 kb on - strand, within Psest_2378at 2528.331 kb on - strand, within Psest_2378at 2528.532 kb on + strand, within Psest_2378at 2528.533 kb on - strand, within Psest_2378at 2528.533 kb on - strand, within Psest_2378at 2528.534 kb on + strand, within Psest_2378at 2528.567 kb on + strand, within Psest_2378at 2528.568 kb on - strand, within Psest_2378at 2528.636 kb on + strand, within Psest_2378at 2528.652 kb on - strand, within Psest_2378at 2528.708 kb on + strand, within Psest_2378at 2528.708 kb on + strand, within Psest_2378at 2528.709 kb on - strand, within Psest_2378at 2528.709 kb on - strand, within Psest_2378at 2528.709 kb on - strand, within Psest_2378at 2528.709 kb on - strand, within Psest_2378at 2528.783 kb on + strand, within Psest_2378at 2528.818 kb on + strand, within Psest_2378at 2528.819 kb on - strand, within Psest_2378at 2528.824 kb on + strand, within Psest_2378at 2528.838 kb on - strand, within Psest_2378at 2528.838 kb on - strand, within Psest_2378at 2528.840 kb on + strand, within Psest_2378at 2528.841 kb on - strand, within Psest_2378at 2528.841 kb on - strand, within Psest_2378

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 20 mM
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2,527,009 - Psest_2377 0.12 -0.9
2,527,169 - Psest_2377 0.28 +0.8
2,527,199 - Psest_2377 0.31 -0.4
2,527,199 - Psest_2377 0.31 -1.1
2,527,282 + Psest_2377 0.39 +0.3
2,527,282 + Psest_2377 0.39 +0.3
2,527,282 + Psest_2377 0.39 -1.4
2,527,282 + Psest_2377 0.39 +0.5
2,527,282 + Psest_2377 0.39 +0.4
2,527,282 + Psest_2377 0.39 +1.4
2,527,282 + Psest_2377 0.39 -0.2
2,527,283 - Psest_2377 0.39 -0.4
2,527,283 - Psest_2377 0.39 -1.8
2,527,283 - Psest_2377 0.39 -0.7
2,527,283 - Psest_2377 0.39 -2.5
2,527,283 - Psest_2377 0.39 -0.3
2,527,283 - Psest_2377 0.39 -0.0
2,527,283 - Psest_2377 0.39 -1.0
2,527,283 - Psest_2377 0.39 -0.2
2,527,283 - Psest_2377 0.39 -0.5
2,527,283 - Psest_2377 0.39 +1.8
2,527,876 + +0.8
2,527,876 + -1.0
2,527,877 - -0.4
2,527,911 - +0.9
2,527,928 + -0.2
2,527,929 - -0.2
2,527,974 + +0.7
2,527,974 + +1.2
2,527,974 + +2.0
2,527,975 - +0.1
2,527,975 - +0.3
2,527,975 - +0.6
2,527,975 - +0.7
2,527,975 - +0.0
2,528,126 + Psest_2378 0.16 -0.5
2,528,126 + Psest_2378 0.16 -1.0
2,528,126 + Psest_2378 0.16 -0.3
2,528,126 + Psest_2378 0.16 +1.0
2,528,126 + Psest_2378 0.16 -1.3
2,528,126 + Psest_2378 0.16 -1.5
2,528,126 + Psest_2378 0.16 -1.3
2,528,126 + Psest_2378 0.16 -0.6
2,528,127 - Psest_2378 0.16 +0.9
2,528,127 - Psest_2378 0.16 +0.4
2,528,127 - Psest_2378 0.16 -0.5
2,528,295 - Psest_2378 0.33 -1.2
2,528,309 + Psest_2378 0.34 +0.5
2,528,312 - Psest_2378 0.34 +0.3
2,528,312 - Psest_2378 0.34 -0.9
2,528,331 - Psest_2378 0.36 -2.2
2,528,532 + Psest_2378 0.56 +0.5
2,528,533 - Psest_2378 0.56 +1.0
2,528,533 - Psest_2378 0.56 +0.3
2,528,534 + Psest_2378 0.56 -0.3
2,528,567 + Psest_2378 0.59 -0.8
2,528,568 - Psest_2378 0.60 +0.8
2,528,636 + Psest_2378 0.66 -0.6
2,528,652 - Psest_2378 0.68 +1.0
2,528,708 + Psest_2378 0.73 -1.1
2,528,708 + Psest_2378 0.73 +0.1
2,528,709 - Psest_2378 0.73 -1.5
2,528,709 - Psest_2378 0.73 -0.0
2,528,709 - Psest_2378 0.73 -0.3
2,528,709 - Psest_2378 0.73 -0.5
2,528,783 + Psest_2378 0.81 -0.3
2,528,818 + Psest_2378 0.84 -0.6
2,528,819 - Psest_2378 0.84 +0.3
2,528,824 + Psest_2378 0.85 -1.0
2,528,838 - Psest_2378 0.86 -0.0
2,528,838 - Psest_2378 0.86 -0.1
2,528,840 + Psest_2378 0.86 +0.7
2,528,841 - Psest_2378 0.86 +0.9
2,528,841 - Psest_2378 0.86 -1.1

Or see this region's nucleotide sequence