Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1714

Experiment: Def Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1712 and Psest_1713 are separated by 95 nucleotidesPsest_1713 and Psest_1714 are separated by 187 nucleotidesPsest_1714 and Psest_1715 are separated by 53 nucleotides Psest_1712: Psest_1712 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,817,493 to 1,820,051 _1712 Psest_1713: Psest_1713 - Protein of unknown function (DUF2897)., at 1,820,147 to 1,820,314 _1713 Psest_1714: Psest_1714 - orotidine 5'-phosphate decarboxylase, subfamily 1, at 1,820,502 to 1,821,197 _1714 Psest_1715: Psest_1715 - Putative NADP-dependent oxidoreductases, at 1,821,251 to 1,822,255 _1715 Position (kb) 1820 1821 1822Strain fitness (log2 ratio) -2 -1 0 1 2at 1819.692 kb on + strand, within Psest_1712at 1819.702 kb on - strand, within Psest_1712at 1819.726 kb on + strand, within Psest_1712at 1819.726 kb on + strand, within Psest_1712at 1819.726 kb on + strand, within Psest_1712at 1819.727 kb on - strand, within Psest_1712at 1819.727 kb on - strand, within Psest_1712at 1819.727 kb on - strand, within Psest_1712at 1819.756 kb on + strand, within Psest_1712at 1819.756 kb on + strand, within Psest_1712at 1819.757 kb on - strand, within Psest_1712at 1819.795 kb on + strand, within Psest_1712at 1819.796 kb on - strandat 1819.817 kb on - strandat 1819.908 kb on - strandat 1819.908 kb on - strandat 1819.959 kb on + strandat 1820.063 kb on + strandat 1820.066 kb on + strandat 1820.066 kb on + strandat 1820.066 kb on + strandat 1820.066 kb on + strandat 1820.066 kb on + strandat 1820.067 kb on - strandat 1820.527 kb on + strandat 1820.924 kb on - strand, within Psest_1714at 1820.924 kb on - strand, within Psest_1714at 1821.118 kb on - strand, within Psest_1714at 1821.417 kb on + strand, within Psest_1715at 1821.417 kb on + strand, within Psest_1715at 1821.418 kb on - strand, within Psest_1715at 1821.418 kb on - strand, within Psest_1715at 1821.433 kb on + strand, within Psest_1715at 1821.433 kb on + strand, within Psest_1715at 1821.433 kb on + strand, within Psest_1715at 1821.433 kb on + strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.471 kb on + strand, within Psest_1715at 1821.471 kb on + strand, within Psest_1715at 1821.472 kb on - strand, within Psest_1715at 1821.472 kb on - strand, within Psest_1715at 1821.472 kb on - strand, within Psest_1715at 1821.507 kb on + strand, within Psest_1715at 1821.507 kb on + strand, within Psest_1715at 1821.508 kb on - strand, within Psest_1715at 1821.600 kb on + strand, within Psest_1715at 1821.600 kb on + strand, within Psest_1715at 1821.600 kb on + strand, within Psest_1715at 1821.601 kb on - strand, within Psest_1715at 1821.601 kb on - strand, within Psest_1715at 1821.661 kb on - strand, within Psest_1715at 1821.923 kb on - strand, within Psest_1715at 1821.924 kb on + strand, within Psest_1715at 1821.924 kb on + strand, within Psest_1715at 1821.925 kb on - strand, within Psest_1715at 1821.925 kb on - strand, within Psest_1715at 1821.925 kb on - strand, within Psest_1715at 1821.925 kb on - strand, within Psest_1715at 1821.948 kb on + strand, within Psest_1715at 1821.948 kb on + strand, within Psest_1715at 1821.948 kb on + strand, within Psest_1715at 1821.949 kb on - strand, within Psest_1715at 1821.951 kb on + strand, within Psest_1715at 1821.952 kb on - strand, within Psest_1715at 1821.952 kb on - strand, within Psest_1715at 1821.952 kb on - strand, within Psest_1715at 1821.965 kb on + strand, within Psest_1715at 1821.977 kb on + strand, within Psest_1715at 1821.978 kb on - strand, within Psest_1715at 1821.996 kb on + strand, within Psest_1715at 1821.996 kb on + strand, within Psest_1715at 1822.074 kb on + strand, within Psest_1715at 1822.074 kb on + strand, within Psest_1715at 1822.075 kb on - strand, within Psest_1715at 1822.075 kb on - strand, within Psest_1715at 1822.075 kb on - strand, within Psest_1715at 1822.075 kb on - strand, within Psest_1715at 1822.075 kb on - strand, within Psest_1715at 1822.125 kb on + strand, within Psest_1715at 1822.183 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 20 mM
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1,819,692 + Psest_1712 0.86 +0.7
1,819,702 - Psest_1712 0.86 +0.4
1,819,726 + Psest_1712 0.87 -0.1
1,819,726 + Psest_1712 0.87 -1.0
1,819,726 + Psest_1712 0.87 +0.3
1,819,727 - Psest_1712 0.87 +0.2
1,819,727 - Psest_1712 0.87 +0.3
1,819,727 - Psest_1712 0.87 -0.8
1,819,756 + Psest_1712 0.88 -0.3
1,819,756 + Psest_1712 0.88 -1.2
1,819,757 - Psest_1712 0.88 -1.3
1,819,795 + Psest_1712 0.90 +0.9
1,819,796 - +1.1
1,819,817 - +1.1
1,819,908 - -1.0
1,819,908 - -0.2
1,819,959 + -0.2
1,820,063 + -0.4
1,820,066 + -0.2
1,820,066 + +0.5
1,820,066 + -0.3
1,820,066 + +0.6
1,820,066 + +0.3
1,820,067 - +0.1
1,820,527 + +0.1
1,820,924 - Psest_1714 0.61 +0.4
1,820,924 - Psest_1714 0.61 -1.5
1,821,118 - Psest_1714 0.89 -1.3
1,821,417 + Psest_1715 0.17 -0.3
1,821,417 + Psest_1715 0.17 +0.4
1,821,418 - Psest_1715 0.17 -1.3
1,821,418 - Psest_1715 0.17 -0.3
1,821,433 + Psest_1715 0.18 -0.1
1,821,433 + Psest_1715 0.18 -0.6
1,821,433 + Psest_1715 0.18 -0.8
1,821,433 + Psest_1715 0.18 +0.5
1,821,434 - Psest_1715 0.18 +1.5
1,821,434 - Psest_1715 0.18 +0.4
1,821,434 - Psest_1715 0.18 +0.5
1,821,434 - Psest_1715 0.18 +0.0
1,821,434 - Psest_1715 0.18 +0.3
1,821,434 - Psest_1715 0.18 -1.9
1,821,434 - Psest_1715 0.18 +1.6
1,821,471 + Psest_1715 0.22 -0.0
1,821,471 + Psest_1715 0.22 +1.2
1,821,472 - Psest_1715 0.22 -2.1
1,821,472 - Psest_1715 0.22 -0.3
1,821,472 - Psest_1715 0.22 -0.2
1,821,507 + Psest_1715 0.25 -0.2
1,821,507 + Psest_1715 0.25 +0.4
1,821,508 - Psest_1715 0.26 -0.8
1,821,600 + Psest_1715 0.35 +1.3
1,821,600 + Psest_1715 0.35 -1.1
1,821,600 + Psest_1715 0.35 -0.4
1,821,601 - Psest_1715 0.35 +1.0
1,821,601 - Psest_1715 0.35 +0.0
1,821,661 - Psest_1715 0.41 +1.3
1,821,923 - Psest_1715 0.67 +0.2
1,821,924 + Psest_1715 0.67 -0.1
1,821,924 + Psest_1715 0.67 +0.7
1,821,925 - Psest_1715 0.67 -0.2
1,821,925 - Psest_1715 0.67 -1.0
1,821,925 - Psest_1715 0.67 +0.8
1,821,925 - Psest_1715 0.67 -0.8
1,821,948 + Psest_1715 0.69 -0.3
1,821,948 + Psest_1715 0.69 -1.0
1,821,948 + Psest_1715 0.69 -1.0
1,821,949 - Psest_1715 0.69 -1.1
1,821,951 + Psest_1715 0.70 -0.1
1,821,952 - Psest_1715 0.70 -0.4
1,821,952 - Psest_1715 0.70 +0.8
1,821,952 - Psest_1715 0.70 +1.1
1,821,965 + Psest_1715 0.71 +0.5
1,821,977 + Psest_1715 0.72 -0.5
1,821,978 - Psest_1715 0.72 -1.3
1,821,996 + Psest_1715 0.74 +0.1
1,821,996 + Psest_1715 0.74 -0.4
1,822,074 + Psest_1715 0.82 +2.2
1,822,074 + Psest_1715 0.82 +0.4
1,822,075 - Psest_1715 0.82 +0.8
1,822,075 - Psest_1715 0.82 -1.0
1,822,075 - Psest_1715 0.82 +1.3
1,822,075 - Psest_1715 0.82 +0.4
1,822,075 - Psest_1715 0.82 -2.3
1,822,125 + Psest_1715 0.87 -2.1
1,822,183 - +0.4

Or see this region's nucleotide sequence