Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1712 and Psest_1713 are separated by 95 nucleotides Psest_1713 and Psest_1714 are separated by 187 nucleotides Psest_1714 and Psest_1715 are separated by 53 nucleotides
Psest_1712: Psest_1712 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,817,493 to 1,820,051
_1712
Psest_1713: Psest_1713 - Protein of unknown function (DUF2897)., at 1,820,147 to 1,820,314
_1713
Psest_1714: Psest_1714 - orotidine 5'-phosphate decarboxylase, subfamily 1, at 1,820,502 to 1,821,197
_1714
Psest_1715: Psest_1715 - Putative NADP-dependent oxidoreductases, at 1,821,251 to 1,822,255
_1715
Position (kb)
1820
1821
1822 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1819.692 kb on + strand, within Psest_1712 at 1819.702 kb on - strand, within Psest_1712 at 1819.726 kb on + strand, within Psest_1712 at 1819.726 kb on + strand, within Psest_1712 at 1819.726 kb on + strand, within Psest_1712 at 1819.727 kb on - strand, within Psest_1712 at 1819.727 kb on - strand, within Psest_1712 at 1819.727 kb on - strand, within Psest_1712 at 1819.756 kb on + strand, within Psest_1712 at 1819.756 kb on + strand, within Psest_1712 at 1819.757 kb on - strand, within Psest_1712 at 1819.795 kb on + strand, within Psest_1712 at 1819.796 kb on - strand at 1819.817 kb on - strand at 1819.908 kb on - strand at 1819.908 kb on - strand at 1819.959 kb on + strand at 1820.063 kb on + strand at 1820.066 kb on + strand at 1820.066 kb on + strand at 1820.066 kb on + strand at 1820.066 kb on + strand at 1820.066 kb on + strand at 1820.067 kb on - strand at 1820.527 kb on + strand at 1820.924 kb on - strand, within Psest_1714 at 1820.924 kb on - strand, within Psest_1714 at 1821.118 kb on - strand, within Psest_1714 at 1821.417 kb on + strand, within Psest_1715 at 1821.417 kb on + strand, within Psest_1715 at 1821.418 kb on - strand, within Psest_1715 at 1821.418 kb on - strand, within Psest_1715 at 1821.433 kb on + strand, within Psest_1715 at 1821.433 kb on + strand, within Psest_1715 at 1821.433 kb on + strand, within Psest_1715 at 1821.433 kb on + strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.471 kb on + strand, within Psest_1715 at 1821.471 kb on + strand, within Psest_1715 at 1821.472 kb on - strand, within Psest_1715 at 1821.472 kb on - strand, within Psest_1715 at 1821.472 kb on - strand, within Psest_1715 at 1821.507 kb on + strand, within Psest_1715 at 1821.507 kb on + strand, within Psest_1715 at 1821.508 kb on - strand, within Psest_1715 at 1821.600 kb on + strand, within Psest_1715 at 1821.600 kb on + strand, within Psest_1715 at 1821.600 kb on + strand, within Psest_1715 at 1821.601 kb on - strand, within Psest_1715 at 1821.601 kb on - strand, within Psest_1715 at 1821.661 kb on - strand, within Psest_1715 at 1821.923 kb on - strand, within Psest_1715 at 1821.924 kb on + strand, within Psest_1715 at 1821.924 kb on + strand, within Psest_1715 at 1821.925 kb on - strand, within Psest_1715 at 1821.925 kb on - strand, within Psest_1715 at 1821.925 kb on - strand, within Psest_1715 at 1821.925 kb on - strand, within Psest_1715 at 1821.948 kb on + strand, within Psest_1715 at 1821.948 kb on + strand, within Psest_1715 at 1821.948 kb on + strand, within Psest_1715 at 1821.949 kb on - strand, within Psest_1715 at 1821.951 kb on + strand, within Psest_1715 at 1821.952 kb on - strand, within Psest_1715 at 1821.952 kb on - strand, within Psest_1715 at 1821.952 kb on - strand, within Psest_1715 at 1821.965 kb on + strand, within Psest_1715 at 1821.977 kb on + strand, within Psest_1715 at 1821.978 kb on - strand, within Psest_1715 at 1821.996 kb on + strand, within Psest_1715 at 1821.996 kb on + strand, within Psest_1715 at 1822.074 kb on + strand, within Psest_1715 at 1822.074 kb on + strand, within Psest_1715 at 1822.075 kb on - strand, within Psest_1715 at 1822.075 kb on - strand, within Psest_1715 at 1822.075 kb on - strand, within Psest_1715 at 1822.075 kb on - strand, within Psest_1715 at 1822.075 kb on - strand, within Psest_1715 at 1822.125 kb on + strand, within Psest_1715 at 1822.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 1,819,692 + Psest_1712 0.86 +0.7 1,819,702 - Psest_1712 0.86 +0.4 1,819,726 + Psest_1712 0.87 -0.1 1,819,726 + Psest_1712 0.87 -1.0 1,819,726 + Psest_1712 0.87 +0.3 1,819,727 - Psest_1712 0.87 +0.2 1,819,727 - Psest_1712 0.87 +0.3 1,819,727 - Psest_1712 0.87 -0.8 1,819,756 + Psest_1712 0.88 -0.3 1,819,756 + Psest_1712 0.88 -1.2 1,819,757 - Psest_1712 0.88 -1.3 1,819,795 + Psest_1712 0.90 +0.9 1,819,796 - +1.1 1,819,817 - +1.1 1,819,908 - -1.0 1,819,908 - -0.2 1,819,959 + -0.2 1,820,063 + -0.4 1,820,066 + -0.2 1,820,066 + +0.5 1,820,066 + -0.3 1,820,066 + +0.6 1,820,066 + +0.3 1,820,067 - +0.1 1,820,527 + +0.1 1,820,924 - Psest_1714 0.61 +0.4 1,820,924 - Psest_1714 0.61 -1.5 1,821,118 - Psest_1714 0.89 -1.3 1,821,417 + Psest_1715 0.17 -0.3 1,821,417 + Psest_1715 0.17 +0.4 1,821,418 - Psest_1715 0.17 -1.3 1,821,418 - Psest_1715 0.17 -0.3 1,821,433 + Psest_1715 0.18 -0.1 1,821,433 + Psest_1715 0.18 -0.6 1,821,433 + Psest_1715 0.18 -0.8 1,821,433 + Psest_1715 0.18 +0.5 1,821,434 - Psest_1715 0.18 +1.5 1,821,434 - Psest_1715 0.18 +0.4 1,821,434 - Psest_1715 0.18 +0.5 1,821,434 - Psest_1715 0.18 +0.0 1,821,434 - Psest_1715 0.18 +0.3 1,821,434 - Psest_1715 0.18 -1.9 1,821,434 - Psest_1715 0.18 +1.6 1,821,471 + Psest_1715 0.22 -0.0 1,821,471 + Psest_1715 0.22 +1.2 1,821,472 - Psest_1715 0.22 -2.1 1,821,472 - Psest_1715 0.22 -0.3 1,821,472 - Psest_1715 0.22 -0.2 1,821,507 + Psest_1715 0.25 -0.2 1,821,507 + Psest_1715 0.25 +0.4 1,821,508 - Psest_1715 0.26 -0.8 1,821,600 + Psest_1715 0.35 +1.3 1,821,600 + Psest_1715 0.35 -1.1 1,821,600 + Psest_1715 0.35 -0.4 1,821,601 - Psest_1715 0.35 +1.0 1,821,601 - Psest_1715 0.35 +0.0 1,821,661 - Psest_1715 0.41 +1.3 1,821,923 - Psest_1715 0.67 +0.2 1,821,924 + Psest_1715 0.67 -0.1 1,821,924 + Psest_1715 0.67 +0.7 1,821,925 - Psest_1715 0.67 -0.2 1,821,925 - Psest_1715 0.67 -1.0 1,821,925 - Psest_1715 0.67 +0.8 1,821,925 - Psest_1715 0.67 -0.8 1,821,948 + Psest_1715 0.69 -0.3 1,821,948 + Psest_1715 0.69 -1.0 1,821,948 + Psest_1715 0.69 -1.0 1,821,949 - Psest_1715 0.69 -1.1 1,821,951 + Psest_1715 0.70 -0.1 1,821,952 - Psest_1715 0.70 -0.4 1,821,952 - Psest_1715 0.70 +0.8 1,821,952 - Psest_1715 0.70 +1.1 1,821,965 + Psest_1715 0.71 +0.5 1,821,977 + Psest_1715 0.72 -0.5 1,821,978 - Psest_1715 0.72 -1.3 1,821,996 + Psest_1715 0.74 +0.1 1,821,996 + Psest_1715 0.74 -0.4 1,822,074 + Psest_1715 0.82 +2.2 1,822,074 + Psest_1715 0.82 +0.4 1,822,075 - Psest_1715 0.82 +0.8 1,822,075 - Psest_1715 0.82 -1.0 1,822,075 - Psest_1715 0.82 +1.3 1,822,075 - Psest_1715 0.82 +0.4 1,822,075 - Psest_1715 0.82 -2.3 1,822,125 + Psest_1715 0.87 -2.1 1,822,183 - +0.4
Or see this region's nucleotide sequence