Experiment: Def Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1472 and Psest_1473 are separated by 8 nucleotides Psest_1473 and Psest_1474 overlap by 1 nucleotides Psest_1474 and Psest_1475 are separated by 371 nucleotides
Psest_1472: Psest_1472 - Protein of unknown function (DUF3108)., at 1,577,345 to 1,578,055
_1472
Psest_1473: Psest_1473 - phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent, at 1,578,064 to 1,578,711
_1473
Psest_1474: Psest_1474 - phosphoribosylaminoimidazole synthetase, at 1,578,711 to 1,579,769
_1474
Psest_1475: Psest_1475 - Uncharacterized protein conserved in bacteria, at 1,580,141 to 1,581,190
_1475
Position (kb)
1578
1579
1580 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1577.973 kb on + strand, within Psest_1472 at 1577.973 kb on + strand, within Psest_1472 at 1577.973 kb on + strand, within Psest_1472 at 1577.973 kb on + strand, within Psest_1472 at 1577.973 kb on + strand, within Psest_1472 at 1577.973 kb on + strand, within Psest_1472 at 1577.973 kb on + strand, within Psest_1472 at 1577.973 kb on + strand, within Psest_1472 at 1577.973 kb on + strand, within Psest_1472 at 1577.973 kb on + strand, within Psest_1472 at 1577.974 kb on - strand, within Psest_1472 at 1577.974 kb on - strand, within Psest_1472 at 1577.974 kb on - strand, within Psest_1472 at 1578.059 kb on - strand at 1578.065 kb on + strand at 1578.065 kb on + strand at 1578.065 kb on + strand at 1578.173 kb on + strand, within Psest_1473 at 1578.192 kb on + strand, within Psest_1473 at 1578.192 kb on + strand, within Psest_1473 at 1578.193 kb on - strand, within Psest_1473 at 1578.359 kb on + strand, within Psest_1473 at 1578.359 kb on + strand, within Psest_1473 at 1578.359 kb on + strand, within Psest_1473 at 1578.359 kb on + strand, within Psest_1473 at 1578.359 kb on + strand, within Psest_1473 at 1578.359 kb on + strand, within Psest_1473 at 1578.360 kb on - strand, within Psest_1473 at 1578.360 kb on - strand, within Psest_1473 at 1578.360 kb on - strand, within Psest_1473 at 1578.360 kb on - strand, within Psest_1473 at 1578.360 kb on - strand, within Psest_1473 at 1578.360 kb on - strand, within Psest_1473 at 1578.360 kb on - strand, within Psest_1473 at 1578.686 kb on - strand at 1578.691 kb on + strand at 1578.691 kb on + strand at 1578.691 kb on + strand at 1578.691 kb on + strand at 1578.691 kb on + strand at 1578.691 kb on + strand at 1578.691 kb on + strand at 1578.691 kb on + strand at 1578.691 kb on + strand at 1578.692 kb on - strand at 1578.692 kb on - strand at 1578.692 kb on - strand at 1578.692 kb on - strand at 1578.692 kb on - strand at 1578.692 kb on - strand at 1578.692 kb on - strand at 1578.872 kb on + strand, within Psest_1474 at 1578.951 kb on - strand, within Psest_1474 at 1579.084 kb on + strand, within Psest_1474 at 1579.084 kb on + strand, within Psest_1474 at 1579.084 kb on + strand, within Psest_1474 at 1579.084 kb on + strand, within Psest_1474 at 1579.084 kb on + strand, within Psest_1474 at 1579.085 kb on - strand, within Psest_1474 at 1579.085 kb on - strand, within Psest_1474 at 1579.085 kb on - strand, within Psest_1474 at 1579.085 kb on - strand, within Psest_1474 at 1579.085 kb on - strand, within Psest_1474 at 1579.085 kb on - strand, within Psest_1474 at 1579.085 kb on - strand, within Psest_1474 at 1579.085 kb on - strand, within Psest_1474 at 1579.085 kb on - strand, within Psest_1474 at 1579.085 kb on - strand, within Psest_1474 at 1579.085 kb on - strand, within Psest_1474 at 1579.085 kb on - strand, within Psest_1474 at 1579.085 kb on - strand, within Psest_1474 at 1579.088 kb on + strand, within Psest_1474 at 1579.324 kb on + strand, within Psest_1474 at 1579.325 kb on - strand, within Psest_1474 at 1579.325 kb on - strand, within Psest_1474 at 1579.325 kb on - strand, within Psest_1474 at 1579.325 kb on - strand, within Psest_1474 at 1579.325 kb on - strand, within Psest_1474 at 1579.325 kb on - strand, within Psest_1474 at 1579.444 kb on + strand, within Psest_1474 at 1579.447 kb on + strand, within Psest_1474 at 1579.448 kb on - strand, within Psest_1474 at 1579.607 kb on - strand, within Psest_1474 at 1579.745 kb on - strand at 1579.745 kb on - strand at 1579.745 kb on - strand at 1579.745 kb on - strand at 1579.745 kb on - strand at 1579.745 kb on - strand at 1579.745 kb on - strand at 1579.769 kb on + strand at 1579.769 kb on + strand at 1579.770 kb on - strand at 1579.770 kb on - strand at 1579.770 kb on - strand at 1579.770 kb on - strand at 1579.784 kb on + strand at 1579.784 kb on + strand at 1579.784 kb on + strand at 1579.970 kb on + strand at 1579.970 kb on + strand at 1580.082 kb on + strand at 1580.089 kb on + strand at 1580.090 kb on - strand at 1580.107 kb on + strand at 1580.107 kb on + strand at 1580.107 kb on + strand at 1580.107 kb on + strand at 1580.108 kb on - strand at 1580.108 kb on - strand at 1580.108 kb on - strand at 1580.108 kb on - strand at 1580.149 kb on + strand at 1580.150 kb on - strand at 1580.150 kb on - strand at 1580.150 kb on - strand at 1580.150 kb on - strand at 1580.153 kb on + strand at 1580.225 kb on + strand at 1580.386 kb on + strand, within Psest_1475 at 1580.387 kb on - strand, within Psest_1475 at 1580.387 kb on - strand, within Psest_1475 at 1580.390 kb on + strand, within Psest_1475 at 1580.390 kb on + strand, within Psest_1475 at 1580.390 kb on + strand, within Psest_1475 at 1580.391 kb on - strand, within Psest_1475 at 1580.391 kb on - strand, within Psest_1475 at 1580.411 kb on - strand, within Psest_1475 at 1580.668 kb on + strand, within Psest_1475 at 1580.702 kb on + strand, within Psest_1475
Per-strain Table
Position Strand Gene LocusTag Fraction Def Chlorate 20 mM remove 1,577,973 + Psest_1472 0.88 -1.0 1,577,973 + Psest_1472 0.88 +0.1 1,577,973 + Psest_1472 0.88 -0.4 1,577,973 + Psest_1472 0.88 +0.2 1,577,973 + Psest_1472 0.88 -1.0 1,577,973 + Psest_1472 0.88 -0.6 1,577,973 + Psest_1472 0.88 +0.8 1,577,973 + Psest_1472 0.88 -1.3 1,577,973 + Psest_1472 0.88 -0.6 1,577,973 + Psest_1472 0.88 -0.8 1,577,974 - Psest_1472 0.88 +0.7 1,577,974 - Psest_1472 0.88 +2.2 1,577,974 - Psest_1472 0.88 +0.0 1,578,059 - -2.5 1,578,065 + -1.5 1,578,065 + +1.3 1,578,065 + +0.3 1,578,173 + Psest_1473 0.17 -2.1 1,578,192 + Psest_1473 0.20 -2.7 1,578,192 + Psest_1473 0.20 -2.2 1,578,193 - Psest_1473 0.20 -0.6 1,578,359 + Psest_1473 0.46 -2.0 1,578,359 + Psest_1473 0.46 -2.9 1,578,359 + Psest_1473 0.46 -1.8 1,578,359 + Psest_1473 0.46 -2.4 1,578,359 + Psest_1473 0.46 -4.5 1,578,359 + Psest_1473 0.46 -3.6 1,578,360 - Psest_1473 0.46 -1.9 1,578,360 - Psest_1473 0.46 +0.2 1,578,360 - Psest_1473 0.46 -3.9 1,578,360 - Psest_1473 0.46 -2.3 1,578,360 - Psest_1473 0.46 -2.8 1,578,360 - Psest_1473 0.46 -1.5 1,578,360 - Psest_1473 0.46 -2.5 1,578,686 - -2.2 1,578,691 + -0.6 1,578,691 + -1.3 1,578,691 + -2.4 1,578,691 + -0.5 1,578,691 + -2.1 1,578,691 + -0.7 1,578,691 + -4.3 1,578,691 + -1.4 1,578,691 + -4.5 1,578,692 - -1.5 1,578,692 - -2.1 1,578,692 - -0.3 1,578,692 - -2.7 1,578,692 - -3.3 1,578,692 - -0.6 1,578,692 - -0.1 1,578,872 + Psest_1474 0.15 -1.4 1,578,951 - Psest_1474 0.23 -1.6 1,579,084 + Psest_1474 0.35 +2.2 1,579,084 + Psest_1474 0.35 -0.1 1,579,084 + Psest_1474 0.35 -1.7 1,579,084 + Psest_1474 0.35 -1.6 1,579,084 + Psest_1474 0.35 -0.8 1,579,085 - Psest_1474 0.35 -1.1 1,579,085 - Psest_1474 0.35 -1.1 1,579,085 - Psest_1474 0.35 -1.5 1,579,085 - Psest_1474 0.35 -0.6 1,579,085 - Psest_1474 0.35 -2.5 1,579,085 - Psest_1474 0.35 -0.1 1,579,085 - Psest_1474 0.35 -0.4 1,579,085 - Psest_1474 0.35 -1.0 1,579,085 - Psest_1474 0.35 -1.0 1,579,085 - Psest_1474 0.35 -0.6 1,579,085 - Psest_1474 0.35 -1.3 1,579,085 - Psest_1474 0.35 +0.2 1,579,085 - Psest_1474 0.35 +0.2 1,579,088 + Psest_1474 0.36 -1.1 1,579,324 + Psest_1474 0.58 -1.4 1,579,325 - Psest_1474 0.58 -0.6 1,579,325 - Psest_1474 0.58 -1.3 1,579,325 - Psest_1474 0.58 -0.4 1,579,325 - Psest_1474 0.58 -2.5 1,579,325 - Psest_1474 0.58 -1.6 1,579,325 - Psest_1474 0.58 -1.4 1,579,444 + Psest_1474 0.69 -1.9 1,579,447 + Psest_1474 0.69 -1.5 1,579,448 - Psest_1474 0.70 -1.1 1,579,607 - Psest_1474 0.85 -0.8 1,579,745 - +0.2 1,579,745 - -1.0 1,579,745 - -1.3 1,579,745 - -0.5 1,579,745 - -0.4 1,579,745 - +0.2 1,579,745 - -1.6 1,579,769 + -1.4 1,579,769 + -0.8 1,579,770 - -2.8 1,579,770 - -2.7 1,579,770 - -1.6 1,579,770 - +0.9 1,579,784 + -0.8 1,579,784 + -0.4 1,579,784 + -2.1 1,579,970 + -1.4 1,579,970 + +0.6 1,580,082 + +0.7 1,580,089 + +1.0 1,580,090 - -0.4 1,580,107 + +0.2 1,580,107 + +0.5 1,580,107 + -0.9 1,580,107 + +0.2 1,580,108 - -0.1 1,580,108 - -0.4 1,580,108 - +0.7 1,580,108 - +0.1 1,580,149 + -0.0 1,580,150 - -2.0 1,580,150 - -0.1 1,580,150 - -0.9 1,580,150 - -1.6 1,580,153 + +0.2 1,580,225 + -1.7 1,580,386 + Psest_1475 0.23 +0.5 1,580,387 - Psest_1475 0.23 -0.2 1,580,387 - Psest_1475 0.23 -0.1 1,580,390 + Psest_1475 0.24 +1.4 1,580,390 + Psest_1475 0.24 -0.6 1,580,390 + Psest_1475 0.24 +1.6 1,580,391 - Psest_1475 0.24 +1.1 1,580,391 - Psest_1475 0.24 +0.0 1,580,411 - Psest_1475 0.26 -0.4 1,580,668 + Psest_1475 0.50 +1.7 1,580,702 + Psest_1475 0.53 +1.1
Or see this region's nucleotide sequence