Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1474

Experiment: Def Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1472 and Psest_1473 are separated by 8 nucleotidesPsest_1473 and Psest_1474 overlap by 1 nucleotidesPsest_1474 and Psest_1475 are separated by 371 nucleotides Psest_1472: Psest_1472 - Protein of unknown function (DUF3108)., at 1,577,345 to 1,578,055 _1472 Psest_1473: Psest_1473 - phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent, at 1,578,064 to 1,578,711 _1473 Psest_1474: Psest_1474 - phosphoribosylaminoimidazole synthetase, at 1,578,711 to 1,579,769 _1474 Psest_1475: Psest_1475 - Uncharacterized protein conserved in bacteria, at 1,580,141 to 1,581,190 _1475 Position (kb) 1578 1579 1580Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1577.973 kb on + strand, within Psest_1472at 1577.973 kb on + strand, within Psest_1472at 1577.973 kb on + strand, within Psest_1472at 1577.973 kb on + strand, within Psest_1472at 1577.973 kb on + strand, within Psest_1472at 1577.973 kb on + strand, within Psest_1472at 1577.973 kb on + strand, within Psest_1472at 1577.973 kb on + strand, within Psest_1472at 1577.973 kb on + strand, within Psest_1472at 1577.973 kb on + strand, within Psest_1472at 1577.974 kb on - strand, within Psest_1472at 1577.974 kb on - strand, within Psest_1472at 1577.974 kb on - strand, within Psest_1472at 1578.059 kb on - strandat 1578.065 kb on + strandat 1578.065 kb on + strandat 1578.065 kb on + strandat 1578.173 kb on + strand, within Psest_1473at 1578.192 kb on + strand, within Psest_1473at 1578.192 kb on + strand, within Psest_1473at 1578.193 kb on - strand, within Psest_1473at 1578.359 kb on + strand, within Psest_1473at 1578.359 kb on + strand, within Psest_1473at 1578.359 kb on + strand, within Psest_1473at 1578.359 kb on + strand, within Psest_1473at 1578.359 kb on + strand, within Psest_1473at 1578.359 kb on + strand, within Psest_1473at 1578.360 kb on - strand, within Psest_1473at 1578.360 kb on - strand, within Psest_1473at 1578.360 kb on - strand, within Psest_1473at 1578.360 kb on - strand, within Psest_1473at 1578.360 kb on - strand, within Psest_1473at 1578.360 kb on - strand, within Psest_1473at 1578.360 kb on - strand, within Psest_1473at 1578.686 kb on - strandat 1578.691 kb on + strandat 1578.691 kb on + strandat 1578.691 kb on + strandat 1578.691 kb on + strandat 1578.691 kb on + strandat 1578.691 kb on + strandat 1578.691 kb on + strandat 1578.691 kb on + strandat 1578.691 kb on + strandat 1578.692 kb on - strandat 1578.692 kb on - strandat 1578.692 kb on - strandat 1578.692 kb on - strandat 1578.692 kb on - strandat 1578.692 kb on - strandat 1578.692 kb on - strandat 1578.872 kb on + strand, within Psest_1474at 1578.951 kb on - strand, within Psest_1474at 1579.084 kb on + strand, within Psest_1474at 1579.084 kb on + strand, within Psest_1474at 1579.084 kb on + strand, within Psest_1474at 1579.084 kb on + strand, within Psest_1474at 1579.084 kb on + strand, within Psest_1474at 1579.085 kb on - strand, within Psest_1474at 1579.085 kb on - strand, within Psest_1474at 1579.085 kb on - strand, within Psest_1474at 1579.085 kb on - strand, within Psest_1474at 1579.085 kb on - strand, within Psest_1474at 1579.085 kb on - strand, within Psest_1474at 1579.085 kb on - strand, within Psest_1474at 1579.085 kb on - strand, within Psest_1474at 1579.085 kb on - strand, within Psest_1474at 1579.085 kb on - strand, within Psest_1474at 1579.085 kb on - strand, within Psest_1474at 1579.085 kb on - strand, within Psest_1474at 1579.085 kb on - strand, within Psest_1474at 1579.088 kb on + strand, within Psest_1474at 1579.324 kb on + strand, within Psest_1474at 1579.325 kb on - strand, within Psest_1474at 1579.325 kb on - strand, within Psest_1474at 1579.325 kb on - strand, within Psest_1474at 1579.325 kb on - strand, within Psest_1474at 1579.325 kb on - strand, within Psest_1474at 1579.325 kb on - strand, within Psest_1474at 1579.444 kb on + strand, within Psest_1474at 1579.447 kb on + strand, within Psest_1474at 1579.448 kb on - strand, within Psest_1474at 1579.607 kb on - strand, within Psest_1474at 1579.745 kb on - strandat 1579.745 kb on - strandat 1579.745 kb on - strandat 1579.745 kb on - strandat 1579.745 kb on - strandat 1579.745 kb on - strandat 1579.745 kb on - strandat 1579.769 kb on + strandat 1579.769 kb on + strandat 1579.770 kb on - strandat 1579.770 kb on - strandat 1579.770 kb on - strandat 1579.770 kb on - strandat 1579.784 kb on + strandat 1579.784 kb on + strandat 1579.784 kb on + strandat 1579.970 kb on + strandat 1579.970 kb on + strandat 1580.082 kb on + strandat 1580.089 kb on + strandat 1580.090 kb on - strandat 1580.107 kb on + strandat 1580.107 kb on + strandat 1580.107 kb on + strandat 1580.107 kb on + strandat 1580.108 kb on - strandat 1580.108 kb on - strandat 1580.108 kb on - strandat 1580.108 kb on - strandat 1580.149 kb on + strandat 1580.150 kb on - strandat 1580.150 kb on - strandat 1580.150 kb on - strandat 1580.150 kb on - strandat 1580.153 kb on + strandat 1580.225 kb on + strandat 1580.386 kb on + strand, within Psest_1475at 1580.387 kb on - strand, within Psest_1475at 1580.387 kb on - strand, within Psest_1475at 1580.390 kb on + strand, within Psest_1475at 1580.390 kb on + strand, within Psest_1475at 1580.390 kb on + strand, within Psest_1475at 1580.391 kb on - strand, within Psest_1475at 1580.391 kb on - strand, within Psest_1475at 1580.411 kb on - strand, within Psest_1475at 1580.668 kb on + strand, within Psest_1475at 1580.702 kb on + strand, within Psest_1475

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Chlorate 20 mM
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1,577,973 + Psest_1472 0.88 -1.0
1,577,973 + Psest_1472 0.88 +0.1
1,577,973 + Psest_1472 0.88 -0.4
1,577,973 + Psest_1472 0.88 +0.2
1,577,973 + Psest_1472 0.88 -1.0
1,577,973 + Psest_1472 0.88 -0.6
1,577,973 + Psest_1472 0.88 +0.8
1,577,973 + Psest_1472 0.88 -1.3
1,577,973 + Psest_1472 0.88 -0.6
1,577,973 + Psest_1472 0.88 -0.8
1,577,974 - Psest_1472 0.88 +0.7
1,577,974 - Psest_1472 0.88 +2.2
1,577,974 - Psest_1472 0.88 +0.0
1,578,059 - -2.5
1,578,065 + -1.5
1,578,065 + +1.3
1,578,065 + +0.3
1,578,173 + Psest_1473 0.17 -2.1
1,578,192 + Psest_1473 0.20 -2.7
1,578,192 + Psest_1473 0.20 -2.2
1,578,193 - Psest_1473 0.20 -0.6
1,578,359 + Psest_1473 0.46 -2.0
1,578,359 + Psest_1473 0.46 -2.9
1,578,359 + Psest_1473 0.46 -1.8
1,578,359 + Psest_1473 0.46 -2.4
1,578,359 + Psest_1473 0.46 -4.5
1,578,359 + Psest_1473 0.46 -3.6
1,578,360 - Psest_1473 0.46 -1.9
1,578,360 - Psest_1473 0.46 +0.2
1,578,360 - Psest_1473 0.46 -3.9
1,578,360 - Psest_1473 0.46 -2.3
1,578,360 - Psest_1473 0.46 -2.8
1,578,360 - Psest_1473 0.46 -1.5
1,578,360 - Psest_1473 0.46 -2.5
1,578,686 - -2.2
1,578,691 + -0.6
1,578,691 + -1.3
1,578,691 + -2.4
1,578,691 + -0.5
1,578,691 + -2.1
1,578,691 + -0.7
1,578,691 + -4.3
1,578,691 + -1.4
1,578,691 + -4.5
1,578,692 - -1.5
1,578,692 - -2.1
1,578,692 - -0.3
1,578,692 - -2.7
1,578,692 - -3.3
1,578,692 - -0.6
1,578,692 - -0.1
1,578,872 + Psest_1474 0.15 -1.4
1,578,951 - Psest_1474 0.23 -1.6
1,579,084 + Psest_1474 0.35 +2.2
1,579,084 + Psest_1474 0.35 -0.1
1,579,084 + Psest_1474 0.35 -1.7
1,579,084 + Psest_1474 0.35 -1.6
1,579,084 + Psest_1474 0.35 -0.8
1,579,085 - Psest_1474 0.35 -1.1
1,579,085 - Psest_1474 0.35 -1.1
1,579,085 - Psest_1474 0.35 -1.5
1,579,085 - Psest_1474 0.35 -0.6
1,579,085 - Psest_1474 0.35 -2.5
1,579,085 - Psest_1474 0.35 -0.1
1,579,085 - Psest_1474 0.35 -0.4
1,579,085 - Psest_1474 0.35 -1.0
1,579,085 - Psest_1474 0.35 -1.0
1,579,085 - Psest_1474 0.35 -0.6
1,579,085 - Psest_1474 0.35 -1.3
1,579,085 - Psest_1474 0.35 +0.2
1,579,085 - Psest_1474 0.35 +0.2
1,579,088 + Psest_1474 0.36 -1.1
1,579,324 + Psest_1474 0.58 -1.4
1,579,325 - Psest_1474 0.58 -0.6
1,579,325 - Psest_1474 0.58 -1.3
1,579,325 - Psest_1474 0.58 -0.4
1,579,325 - Psest_1474 0.58 -2.5
1,579,325 - Psest_1474 0.58 -1.6
1,579,325 - Psest_1474 0.58 -1.4
1,579,444 + Psest_1474 0.69 -1.9
1,579,447 + Psest_1474 0.69 -1.5
1,579,448 - Psest_1474 0.70 -1.1
1,579,607 - Psest_1474 0.85 -0.8
1,579,745 - +0.2
1,579,745 - -1.0
1,579,745 - -1.3
1,579,745 - -0.5
1,579,745 - -0.4
1,579,745 - +0.2
1,579,745 - -1.6
1,579,769 + -1.4
1,579,769 + -0.8
1,579,770 - -2.8
1,579,770 - -2.7
1,579,770 - -1.6
1,579,770 - +0.9
1,579,784 + -0.8
1,579,784 + -0.4
1,579,784 + -2.1
1,579,970 + -1.4
1,579,970 + +0.6
1,580,082 + +0.7
1,580,089 + +1.0
1,580,090 - -0.4
1,580,107 + +0.2
1,580,107 + +0.5
1,580,107 + -0.9
1,580,107 + +0.2
1,580,108 - -0.1
1,580,108 - -0.4
1,580,108 - +0.7
1,580,108 - +0.1
1,580,149 + -0.0
1,580,150 - -2.0
1,580,150 - -0.1
1,580,150 - -0.9
1,580,150 - -1.6
1,580,153 + +0.2
1,580,225 + -1.7
1,580,386 + Psest_1475 0.23 +0.5
1,580,387 - Psest_1475 0.23 -0.2
1,580,387 - Psest_1475 0.23 -0.1
1,580,390 + Psest_1475 0.24 +1.4
1,580,390 + Psest_1475 0.24 -0.6
1,580,390 + Psest_1475 0.24 +1.6
1,580,391 - Psest_1475 0.24 +1.1
1,580,391 - Psest_1475 0.24 +0.0
1,580,411 - Psest_1475 0.26 -0.4
1,580,668 + Psest_1475 0.50 +1.7
1,580,702 + Psest_1475 0.53 +1.1

Or see this region's nucleotide sequence