Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2939 and SO2940 are separated by 323 nucleotides SO2940 and SO2941 are separated by 4 nucleotides SO2941 and SO2942 are separated by 76 nucleotides
SO2939: SO2939 - hypothetical protein (NCBI ptt file), at 3,075,409 to 3,076,119
SO2939
SO2940: SO2940 - prophage LambdaSo, host specificity protein J, putative (NCBI ptt file), at 3,076,443 to 3,080,468
SO2940
SO2941: SO2941 - prophage LambdaSo, tail assembly protein I (NCBI ptt file), at 3,080,473 to 3,081,102
SO2941
SO2942: SO2942 - hypothetical protein (NCBI ptt file), at 3,081,179 to 3,081,745
SO2942
Position (kb)
3076
3077
3078
3079
3080
3081 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3075.446 kb on + strand at 3075.446 kb on + strand at 3075.524 kb on - strand, within SO2939 at 3075.541 kb on - strand, within SO2939 at 3075.594 kb on + strand, within SO2939 at 3075.596 kb on + strand, within SO2939 at 3075.596 kb on + strand, within SO2939 at 3075.597 kb on - strand, within SO2939 at 3075.597 kb on - strand, within SO2939 at 3075.604 kb on - strand, within SO2939 at 3075.604 kb on - strand, within SO2939 at 3075.604 kb on - strand, within SO2939 at 3075.609 kb on - strand, within SO2939 at 3075.663 kb on + strand, within SO2939 at 3075.671 kb on - strand, within SO2939 at 3075.685 kb on + strand, within SO2939 at 3075.693 kb on - strand, within SO2939 at 3075.760 kb on + strand, within SO2939 at 3075.827 kb on + strand, within SO2939 at 3075.865 kb on + strand, within SO2939 at 3075.873 kb on - strand, within SO2939 at 3075.873 kb on - strand, within SO2939 at 3075.873 kb on - strand, within SO2939 at 3075.881 kb on - strand, within SO2939 at 3075.906 kb on + strand, within SO2939 at 3075.944 kb on - strand, within SO2939 at 3075.946 kb on - strand, within SO2939 at 3076.114 kb on + strand at 3076.114 kb on + strand at 3076.149 kb on + strand at 3076.150 kb on + strand at 3076.157 kb on - strand at 3076.158 kb on - strand at 3076.158 kb on - strand at 3076.169 kb on - strand at 3076.169 kb on - strand at 3076.190 kb on - strand at 3076.205 kb on + strand at 3076.219 kb on + strand at 3076.260 kb on + strand at 3076.268 kb on + strand at 3076.275 kb on + strand at 3076.275 kb on + strand at 3076.292 kb on + strand at 3076.334 kb on - strand at 3076.344 kb on - strand at 3076.354 kb on - strand at 3076.355 kb on - strand at 3076.362 kb on - strand at 3076.384 kb on + strand at 3076.397 kb on - strand at 3076.434 kb on + strand at 3076.442 kb on - strand at 3076.524 kb on + strand at 3076.524 kb on + strand at 3076.532 kb on - strand at 3076.566 kb on - strand at 3076.567 kb on - strand at 3076.572 kb on - strand at 3076.621 kb on + strand at 3076.686 kb on + strand at 3076.694 kb on - strand at 3076.694 kb on - strand at 3076.704 kb on - strand at 3076.784 kb on + strand at 3076.784 kb on + strand at 3076.794 kb on + strand at 3076.802 kb on - strand at 3076.927 kb on + strand, within SO2940 at 3076.952 kb on - strand, within SO2940 at 3076.964 kb on - strand, within SO2940 at 3077.023 kb on + strand, within SO2940 at 3077.030 kb on + strand, within SO2940 at 3077.031 kb on - strand, within SO2940 at 3077.035 kb on + strand, within SO2940 at 3077.035 kb on + strand, within SO2940 at 3077.040 kb on + strand, within SO2940 at 3077.040 kb on + strand, within SO2940 at 3077.040 kb on + strand, within SO2940 at 3077.040 kb on + strand, within SO2940 at 3077.043 kb on - strand, within SO2940 at 3077.048 kb on - strand, within SO2940 at 3077.088 kb on - strand, within SO2940 at 3077.119 kb on + strand, within SO2940 at 3077.127 kb on - strand, within SO2940 at 3077.215 kb on + strand, within SO2940 at 3077.222 kb on + strand, within SO2940 at 3077.240 kb on - strand, within SO2940 at 3077.240 kb on - strand, within SO2940 at 3077.366 kb on - strand, within SO2940 at 3077.596 kb on - strand, within SO2940 at 3077.738 kb on + strand, within SO2940 at 3077.823 kb on - strand, within SO2940 at 3077.860 kb on + strand, within SO2940 at 3077.868 kb on + strand, within SO2940 at 3077.965 kb on + strand, within SO2940 at 3077.969 kb on - strand, within SO2940 at 3077.976 kb on + strand, within SO2940 at 3077.982 kb on - strand, within SO2940 at 3078.061 kb on - strand, within SO2940 at 3078.111 kb on + strand, within SO2940 at 3078.111 kb on + strand, within SO2940 at 3078.112 kb on - strand, within SO2940 at 3078.119 kb on - strand, within SO2940 at 3078.121 kb on + strand, within SO2940 at 3078.143 kb on - strand, within SO2940 at 3078.219 kb on + strand, within SO2940 at 3078.221 kb on + strand, within SO2940 at 3078.272 kb on - strand, within SO2940 at 3078.332 kb on + strand, within SO2940 at 3078.340 kb on - strand, within SO2940 at 3078.393 kb on + strand, within SO2940 at 3078.457 kb on - strand, within SO2940 at 3078.573 kb on - strand, within SO2940 at 3078.604 kb on + strand, within SO2940 at 3078.730 kb on + strand, within SO2940 at 3078.755 kb on + strand, within SO2940 at 3078.755 kb on + strand, within SO2940 at 3078.755 kb on + strand, within SO2940 at 3078.755 kb on + strand, within SO2940 at 3078.757 kb on - strand, within SO2940 at 3078.763 kb on - strand, within SO2940 at 3078.812 kb on + strand, within SO2940 at 3078.812 kb on + strand, within SO2940 at 3078.820 kb on - strand, within SO2940 at 3078.820 kb on - strand, within SO2940 at 3078.845 kb on - strand, within SO2940 at 3078.856 kb on + strand, within SO2940 at 3078.856 kb on - strand, within SO2940 at 3078.861 kb on + strand, within SO2940 at 3078.863 kb on + strand, within SO2940 at 3078.885 kb on + strand, within SO2940 at 3078.935 kb on - strand, within SO2940 at 3079.088 kb on - strand, within SO2940 at 3079.112 kb on - strand, within SO2940 at 3079.354 kb on + strand, within SO2940 at 3079.354 kb on + strand, within SO2940 at 3079.362 kb on - strand, within SO2940 at 3079.372 kb on + strand, within SO2940 at 3079.502 kb on + strand, within SO2940 at 3079.504 kb on + strand, within SO2940 at 3079.512 kb on - strand, within SO2940 at 3079.512 kb on - strand, within SO2940 at 3079.610 kb on + strand, within SO2940 at 3079.668 kb on - strand, within SO2940 at 3079.781 kb on - strand, within SO2940 at 3079.971 kb on + strand, within SO2940 at 3079.971 kb on + strand, within SO2940 at 3079.971 kb on + strand, within SO2940 at 3079.971 kb on + strand, within SO2940 at 3079.979 kb on - strand, within SO2940 at 3080.045 kb on - strand, within SO2940 at 3080.082 kb on - strand at 3080.098 kb on + strand at 3080.098 kb on + strand at 3080.106 kb on - strand at 3080.106 kb on - strand at 3080.128 kb on + strand at 3080.128 kb on + strand at 3080.136 kb on - strand at 3080.271 kb on + strand at 3080.315 kb on - strand at 3080.357 kb on - strand at 3080.657 kb on + strand, within SO2941 at 3080.664 kb on - strand, within SO2941 at 3080.665 kb on + strand, within SO2941 at 3080.673 kb on - strand, within SO2941 at 3080.713 kb on + strand, within SO2941 at 3080.713 kb on + strand, within SO2941 at 3080.734 kb on + strand, within SO2941 at 3080.749 kb on + strand, within SO2941 at 3080.750 kb on + strand, within SO2941 at 3080.767 kb on - strand, within SO2941 at 3080.799 kb on - strand, within SO2941 at 3080.891 kb on - strand, within SO2941 at 3081.054 kb on + strand at 3081.087 kb on + strand at 3081.098 kb on + strand at 3081.106 kb on - strand at 3081.205 kb on + strand at 3081.223 kb on + strand at 3081.237 kb on + strand, within SO2942 at 3081.259 kb on + strand, within SO2942 at 3081.271 kb on + strand, within SO2942 at 3081.279 kb on - strand, within SO2942 at 3081.393 kb on + strand, within SO2942
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,075,446 + -0.6 3,075,446 + -0.6 3,075,524 - SO2939 0.16 +0.3 3,075,541 - SO2939 0.19 +0.4 3,075,594 + SO2939 0.26 +0.9 3,075,596 + SO2939 0.26 +0.0 3,075,596 + SO2939 0.26 -0.4 3,075,597 - SO2939 0.26 -0.8 3,075,597 - SO2939 0.26 -0.0 3,075,604 - SO2939 0.27 +0.6 3,075,604 - SO2939 0.27 -1.8 3,075,604 - SO2939 0.27 -0.3 3,075,609 - SO2939 0.28 -0.4 3,075,663 + SO2939 0.36 -0.1 3,075,671 - SO2939 0.37 -1.0 3,075,685 + SO2939 0.39 +0.5 3,075,693 - SO2939 0.40 -1.0 3,075,760 + SO2939 0.49 +0.4 3,075,827 + SO2939 0.59 +1.6 3,075,865 + SO2939 0.64 -0.7 3,075,873 - SO2939 0.65 -0.9 3,075,873 - SO2939 0.65 +0.1 3,075,873 - SO2939 0.65 +0.4 3,075,881 - SO2939 0.66 +0.8 3,075,906 + SO2939 0.70 -0.4 3,075,944 - SO2939 0.75 -0.4 3,075,946 - SO2939 0.76 -1.4 3,076,114 + +0.5 3,076,114 + -0.1 3,076,149 + +0.1 3,076,150 + -0.8 3,076,157 - -0.1 3,076,158 - +0.4 3,076,158 - -0.4 3,076,169 - -1.4 3,076,169 - -0.0 3,076,190 - +0.2 3,076,205 + -0.1 3,076,219 + -0.6 3,076,260 + -0.7 3,076,268 + -2.2 3,076,275 + -0.0 3,076,275 + +0.0 3,076,292 + -0.1 3,076,334 - -0.8 3,076,344 - -1.4 3,076,354 - -0.2 3,076,355 - -0.3 3,076,362 - +1.2 3,076,384 + +0.2 3,076,397 - -0.1 3,076,434 + -0.8 3,076,442 - -0.5 3,076,524 + -0.5 3,076,524 + +0.2 3,076,532 - -0.6 3,076,566 - -1.3 3,076,567 - -0.4 3,076,572 - +0.8 3,076,621 + +0.7 3,076,686 + +0.1 3,076,694 - +0.4 3,076,694 - -0.2 3,076,704 - -0.4 3,076,784 + +0.1 3,076,784 + -0.4 3,076,794 + -0.8 3,076,802 - -0.7 3,076,927 + SO2940 0.12 -0.3 3,076,952 - SO2940 0.13 -0.5 3,076,964 - SO2940 0.13 -0.1 3,077,023 + SO2940 0.14 +0.2 3,077,030 + SO2940 0.15 -0.7 3,077,031 - SO2940 0.15 -0.8 3,077,035 + SO2940 0.15 -0.5 3,077,035 + SO2940 0.15 -0.3 3,077,040 + SO2940 0.15 +0.3 3,077,040 + SO2940 0.15 -0.2 3,077,040 + SO2940 0.15 -0.2 3,077,040 + SO2940 0.15 -0.5 3,077,043 - SO2940 0.15 -0.9 3,077,048 - SO2940 0.15 -0.1 3,077,088 - SO2940 0.16 -1.4 3,077,119 + SO2940 0.17 -0.8 3,077,127 - SO2940 0.17 -0.4 3,077,215 + SO2940 0.19 -1.0 3,077,222 + SO2940 0.19 -0.0 3,077,240 - SO2940 0.20 -0.5 3,077,240 - SO2940 0.20 +0.2 3,077,366 - SO2940 0.23 -0.0 3,077,596 - SO2940 0.29 -0.2 3,077,738 + SO2940 0.32 +0.2 3,077,823 - SO2940 0.34 +1.2 3,077,860 + SO2940 0.35 +0.6 3,077,868 + SO2940 0.35 -1.0 3,077,965 + SO2940 0.38 -0.0 3,077,969 - SO2940 0.38 +0.1 3,077,976 + SO2940 0.38 -1.8 3,077,982 - SO2940 0.38 -0.1 3,078,061 - SO2940 0.40 -0.1 3,078,111 + SO2940 0.41 +0.1 3,078,111 + SO2940 0.41 +0.3 3,078,112 - SO2940 0.41 +0.7 3,078,119 - SO2940 0.42 +0.4 3,078,121 + SO2940 0.42 -0.1 3,078,143 - SO2940 0.42 -0.5 3,078,219 + SO2940 0.44 +0.7 3,078,221 + SO2940 0.44 -0.0 3,078,272 - SO2940 0.45 +0.7 3,078,332 + SO2940 0.47 -0.6 3,078,340 - SO2940 0.47 -0.5 3,078,393 + SO2940 0.48 +0.1 3,078,457 - SO2940 0.50 +0.3 3,078,573 - SO2940 0.53 -0.8 3,078,604 + SO2940 0.54 +0.5 3,078,730 + SO2940 0.57 -0.6 3,078,755 + SO2940 0.57 -0.6 3,078,755 + SO2940 0.57 -0.3 3,078,755 + SO2940 0.57 +0.2 3,078,755 + SO2940 0.57 -0.2 3,078,757 - SO2940 0.57 -1.4 3,078,763 - SO2940 0.58 +0.1 3,078,812 + SO2940 0.59 +0.9 3,078,812 + SO2940 0.59 +0.6 3,078,820 - SO2940 0.59 -0.5 3,078,820 - SO2940 0.59 -0.9 3,078,845 - SO2940 0.60 +0.3 3,078,856 + SO2940 0.60 -0.0 3,078,856 - SO2940 0.60 -1.3 3,078,861 + SO2940 0.60 -0.3 3,078,863 + SO2940 0.60 -0.3 3,078,885 + SO2940 0.61 -0.4 3,078,935 - SO2940 0.62 +0.3 3,079,088 - SO2940 0.66 -0.5 3,079,112 - SO2940 0.66 -0.9 3,079,354 + SO2940 0.72 -1.1 3,079,354 + SO2940 0.72 +0.2 3,079,362 - SO2940 0.73 +0.2 3,079,372 + SO2940 0.73 +0.3 3,079,502 + SO2940 0.76 -0.9 3,079,504 + SO2940 0.76 -0.3 3,079,512 - SO2940 0.76 -0.3 3,079,512 - SO2940 0.76 +0.5 3,079,610 + SO2940 0.79 -0.6 3,079,668 - SO2940 0.80 -0.4 3,079,781 - SO2940 0.83 -0.3 3,079,971 + SO2940 0.88 -0.6 3,079,971 + SO2940 0.88 +1.8 3,079,971 + SO2940 0.88 -0.9 3,079,971 + SO2940 0.88 -0.5 3,079,979 - SO2940 0.88 -0.9 3,080,045 - SO2940 0.89 +2.0 3,080,082 - +1.1 3,080,098 + -1.4 3,080,098 + +0.5 3,080,106 - -1.3 3,080,106 - -1.1 3,080,128 + +0.1 3,080,128 + +0.5 3,080,136 - -0.4 3,080,271 + +1.2 3,080,315 - -0.0 3,080,357 - -0.4 3,080,657 + SO2941 0.29 -1.7 3,080,664 - SO2941 0.30 +0.4 3,080,665 + SO2941 0.30 -0.2 3,080,673 - SO2941 0.32 -0.0 3,080,713 + SO2941 0.38 +0.1 3,080,713 + SO2941 0.38 +0.0 3,080,734 + SO2941 0.41 +0.5 3,080,749 + SO2941 0.44 +2.1 3,080,750 + SO2941 0.44 -1.4 3,080,767 - SO2941 0.47 -0.3 3,080,799 - SO2941 0.52 -0.7 3,080,891 - SO2941 0.66 +0.4 3,081,054 + +0.7 3,081,087 + -0.5 3,081,098 + +0.5 3,081,106 - -0.8 3,081,205 + -0.6 3,081,223 + -0.6 3,081,237 + SO2942 0.10 -1.2 3,081,259 + SO2942 0.14 -1.0 3,081,271 + SO2942 0.16 -0.0 3,081,279 - SO2942 0.18 -0.2 3,081,393 + SO2942 0.38 -0.4
Or see this region's nucleotide sequence