Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0541 and SO0542 are separated by 43 nucleotides SO0542 and SO0543 are separated by 516 nucleotides
SO0541: SO0541 - metallo-beta-lactamase family protein (NCBI ptt file), at 560,624 to 562,060
SO0541
SO0542: SO0542 - conserved hypothetical protein (NCBI ptt file), at 562,104 to 563,459
SO0542
SO0543: SO0543 - hypothetical protein (NCBI ptt file), at 563,976 to 564,152
SO0543
Position (kb) 562
563
564 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 561.182 kb on + strand, within SO0541 at 561.190 kb on - strand, within SO0541 at 561.356 kb on - strand, within SO0541 at 561.467 kb on - strand, within SO0541 at 561.655 kb on + strand, within SO0541 at 561.771 kb on + strand, within SO0541 at 561.779 kb on - strand, within SO0541 at 561.796 kb on - strand, within SO0541 at 561.820 kb on + strand, within SO0541 at 561.820 kb on + strand, within SO0541 at 561.830 kb on + strand, within SO0541 at 561.838 kb on - strand, within SO0541 at 561.913 kb on + strand, within SO0541 at 561.914 kb on + strand, within SO0541 at 562.074 kb on + strand at 562.074 kb on + strand at 562.082 kb on - strand at 562.082 kb on - strand at 562.154 kb on + strand at 562.154 kb on + strand at 562.164 kb on + strand at 562.164 kb on + strand at 562.202 kb on - strand at 562.219 kb on - strand at 562.226 kb on + strand at 562.288 kb on + strand, within SO0542 at 562.390 kb on - strand, within SO0542 at 562.400 kb on + strand, within SO0542 at 562.546 kb on - strand, within SO0542 at 562.596 kb on + strand, within SO0542 at 562.688 kb on - strand, within SO0542 at 562.729 kb on + strand, within SO0542 at 562.739 kb on + strand, within SO0542 at 562.742 kb on - strand, within SO0542 at 562.762 kb on - strand, within SO0542 at 562.762 kb on - strand, within SO0542 at 562.843 kb on - strand, within SO0542 at 563.067 kb on + strand, within SO0542 at 563.075 kb on - strand, within SO0542 at 563.082 kb on + strand, within SO0542 at 563.082 kb on + strand, within SO0542 at 563.090 kb on - strand, within SO0542 at 563.123 kb on + strand, within SO0542 at 563.147 kb on - strand, within SO0542 at 563.260 kb on + strand, within SO0542 at 563.421 kb on + strand at 563.556 kb on - strand at 563.576 kb on - strand at 563.620 kb on - strand at 563.638 kb on + strand at 563.638 kb on + strand at 563.795 kb on + strand at 563.797 kb on + strand at 563.797 kb on + strand at 563.804 kb on - strand at 563.846 kb on + strand at 563.888 kb on + strand at 563.888 kb on + strand at 563.898 kb on + strand at 563.906 kb on - strand at 563.916 kb on - strand at 563.919 kb on - strand at 563.939 kb on + strand at 563.939 kb on + strand at 563.947 kb on - strand at 563.947 kb on - strand at 563.947 kb on - strand at 563.947 kb on - strand at 563.947 kb on - strand at 563.947 kb on - strand at 563.949 kb on + strand at 563.957 kb on - strand at 563.957 kb on - strand at 563.957 kb on - strand at 563.958 kb on - strand at 563.974 kb on + strand at 563.974 kb on + strand at 563.982 kb on - strand at 563.982 kb on - strand at 564.001 kb on - strand, within SO0543 at 564.063 kb on - strand, within SO0543 at 564.439 kb on + strand at 564.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 561,182 + SO0541 0.39 +0.7 561,190 - SO0541 0.39 -0.2 561,356 - SO0541 0.51 -2.2 561,467 - SO0541 0.59 +0.2 561,655 + SO0541 0.72 -1.3 561,771 + SO0541 0.80 +0.4 561,779 - SO0541 0.80 +0.6 561,796 - SO0541 0.82 +1.2 561,820 + SO0541 0.83 +0.6 561,820 + SO0541 0.83 -0.9 561,830 + SO0541 0.84 +0.3 561,838 - SO0541 0.84 +1.2 561,913 + SO0541 0.90 -1.8 561,914 + SO0541 0.90 +1.0 562,074 + -0.1 562,074 + +0.1 562,082 - +0.3 562,082 - +0.3 562,154 + +1.4 562,154 + +0.3 562,164 + +1.0 562,164 + -0.5 562,202 - +0.0 562,219 - -0.7 562,226 + +0.8 562,288 + SO0542 0.14 +0.3 562,390 - SO0542 0.21 -0.9 562,400 + SO0542 0.22 +0.6 562,546 - SO0542 0.33 +0.7 562,596 + SO0542 0.36 +0.8 562,688 - SO0542 0.43 +0.4 562,729 + SO0542 0.46 +0.4 562,739 + SO0542 0.47 -0.8 562,742 - SO0542 0.47 +0.4 562,762 - SO0542 0.49 +1.0 562,762 - SO0542 0.49 -0.3 562,843 - SO0542 0.54 +1.5 563,067 + SO0542 0.71 -0.5 563,075 - SO0542 0.72 +1.6 563,082 + SO0542 0.72 +0.9 563,082 + SO0542 0.72 +0.6 563,090 - SO0542 0.73 +0.4 563,123 + SO0542 0.75 -0.7 563,147 - SO0542 0.77 +0.5 563,260 + SO0542 0.85 +0.7 563,421 + +3.8 563,556 - +0.4 563,576 - -0.9 563,620 - +0.4 563,638 + +0.9 563,638 + +0.8 563,795 + +0.5 563,797 + -0.3 563,797 + +1.8 563,804 - +0.1 563,846 + -1.1 563,888 + +0.2 563,888 + +1.2 563,898 + -0.1 563,906 - +1.7 563,916 - -0.9 563,919 - -0.4 563,939 + +4.6 563,939 + +0.7 563,947 - +0.4 563,947 - -0.1 563,947 - +1.5 563,947 - -0.3 563,947 - -0.1 563,947 - -0.4 563,949 + +1.7 563,957 - -0.3 563,957 - +0.9 563,957 - +0.8 563,958 - -0.2 563,974 + +0.5 563,974 + +0.4 563,982 - +0.5 563,982 - +1.2 564,001 - SO0543 0.14 -0.6 564,063 - SO0543 0.49 +0.2 564,439 + -0.1 564,441 - +0.1
Or see this region's nucleotide sequence