Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0444 and SO0445 are separated by 105 nucleotides SO0445 and SO0447 are separated by 332 nucleotides SO0447 and SO0448 are separated by 3 nucleotides SO0448 and SO0449 are separated by 6 nucleotides
SO0444: SO0444 - hypothetical protein (NCBI ptt file), at 472,249 to 473,724
SO0444
SO0445: SO0445 - hflC protein, putative (NCBI ptt file), at 473,830 to 474,720
SO0445
SO0447: SO0447 - hypothetical protein (NCBI ptt file), at 475,053 to 475,307
SO0447
SO0448: SO0448 - hypothetical protein (NCBI ptt file), at 475,311 to 475,601
SO0448
SO0449: SO0449 - conserved hypothetical protein (NCBI ptt file), at 475,608 to 477,227
SO0449
Position (kb) 473
474
475 Strain fitness (log2 ratio) -2
-1
0
1
2 at 472.963 kb on + strand, within SO0444 at 472.964 kb on + strand, within SO0444 at 472.965 kb on + strand, within SO0444 at 472.983 kb on - strand, within SO0444 at 473.001 kb on - strand, within SO0444 at 473.088 kb on + strand, within SO0444 at 473.202 kb on - strand, within SO0444 at 473.207 kb on + strand, within SO0444 at 473.346 kb on - strand, within SO0444 at 473.348 kb on - strand, within SO0444 at 473.418 kb on - strand, within SO0444 at 473.490 kb on + strand, within SO0444 at 473.490 kb on + strand, within SO0444 at 473.527 kb on - strand, within SO0444 at 473.570 kb on + strand, within SO0444 at 473.578 kb on - strand at 473.602 kb on + strand at 473.653 kb on - strand at 473.653 kb on - strand at 473.793 kb on + strand at 473.923 kb on - strand, within SO0445 at 474.047 kb on + strand, within SO0445 at 474.123 kb on - strand, within SO0445 at 474.195 kb on + strand, within SO0445 at 474.195 kb on + strand, within SO0445 at 474.203 kb on - strand, within SO0445 at 474.203 kb on - strand, within SO0445 at 474.203 kb on - strand, within SO0445 at 474.203 kb on - strand, within SO0445 at 474.213 kb on - strand, within SO0445 at 474.217 kb on + strand, within SO0445 at 474.268 kb on - strand, within SO0445 at 474.279 kb on - strand, within SO0445 at 474.427 kb on - strand, within SO0445 at 474.488 kb on + strand, within SO0445 at 474.488 kb on - strand, within SO0445 at 474.488 kb on - strand, within SO0445 at 474.606 kb on + strand, within SO0445 at 474.614 kb on - strand, within SO0445 at 474.665 kb on + strand at 474.734 kb on - strand at 474.750 kb on - strand at 474.905 kb on - strand at 474.905 kb on - strand at 475.083 kb on + strand, within SO0447 at 475.141 kb on + strand, within SO0447 at 475.177 kb on + strand, within SO0447 at 475.177 kb on + strand, within SO0447 at 475.179 kb on - strand, within SO0447 at 475.182 kb on + strand, within SO0447 at 475.185 kb on - strand, within SO0447 at 475.362 kb on - strand, within SO0448 at 475.424 kb on + strand, within SO0448 at 475.431 kb on - strand, within SO0448 at 475.478 kb on + strand, within SO0448 at 475.598 kb on - strand at 475.635 kb on - strand at 475.635 kb on - strand at 475.652 kb on + strand at 475.718 kb on + strand at 475.718 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 472,963 + SO0444 0.48 +0.1 472,964 + SO0444 0.48 -0.8 472,965 + SO0444 0.49 -0.0 472,983 - SO0444 0.50 +1.3 473,001 - SO0444 0.51 +0.4 473,088 + SO0444 0.57 -1.3 473,202 - SO0444 0.65 +0.3 473,207 + SO0444 0.65 +1.5 473,346 - SO0444 0.74 +0.3 473,348 - SO0444 0.74 +0.7 473,418 - SO0444 0.79 +2.2 473,490 + SO0444 0.84 -0.6 473,490 + SO0444 0.84 +0.8 473,527 - SO0444 0.87 +1.9 473,570 + SO0444 0.89 -0.3 473,578 - +1.7 473,602 + +1.7 473,653 - +0.7 473,653 - +0.4 473,793 + +0.2 473,923 - SO0445 0.10 +1.5 474,047 + SO0445 0.24 -2.1 474,123 - SO0445 0.33 +0.2 474,195 + SO0445 0.41 +0.7 474,195 + SO0445 0.41 -1.2 474,203 - SO0445 0.42 +0.1 474,203 - SO0445 0.42 +0.4 474,203 - SO0445 0.42 -0.0 474,203 - SO0445 0.42 -0.3 474,213 - SO0445 0.43 +1.2 474,217 + SO0445 0.43 -2.4 474,268 - SO0445 0.49 -1.2 474,279 - SO0445 0.50 +1.9 474,427 - SO0445 0.67 +0.4 474,488 + SO0445 0.74 +0.6 474,488 - SO0445 0.74 +0.0 474,488 - SO0445 0.74 +0.6 474,606 + SO0445 0.87 -1.7 474,614 - SO0445 0.88 -0.3 474,665 + -0.8 474,734 - -0.2 474,750 - -0.0 474,905 - -0.5 474,905 - +1.6 475,083 + SO0447 0.12 +0.3 475,141 + SO0447 0.35 +0.1 475,177 + SO0447 0.49 -0.1 475,177 + SO0447 0.49 -0.5 475,179 - SO0447 0.49 +0.8 475,182 + SO0447 0.51 -0.7 475,185 - SO0447 0.52 +0.5 475,362 - SO0448 0.18 +0.7 475,424 + SO0448 0.39 -0.7 475,431 - SO0448 0.41 +0.0 475,478 + SO0448 0.57 -0.2 475,598 - +1.1 475,635 - -1.0 475,635 - +0.7 475,652 + +1.8 475,718 + +0.7 475,718 + +0.0
Or see this region's nucleotide sequence