Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0323 and SO0324 are separated by 54 nucleotides SO0324 and SO0325 are separated by 104 nucleotides SO0325 and SO0326 are separated by 251 nucleotides
SO0323: SO0323 - hypothetical protein (NCBI ptt file), at 329,121 to 330,053
SO0323
SO0324: SO0324 - conserved hypothetical protein (NCBI ptt file), at 330,108 to 330,509
SO0324
SO0325: SO0325 - dsrE-related protein (NCBI ptt file), at 330,614 to 330,973
SO0325
SO0326: SO0326 - hypothetical protein (NCBI ptt file), at 331,225 to 332,148
SO0326
Position (kb) 330
331 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 329.207 kb on + strand at 329.207 kb on + strand at 329.215 kb on - strand, within SO0323 at 329.242 kb on + strand, within SO0323 at 329.242 kb on + strand, within SO0323 at 329.297 kb on + strand, within SO0323 at 329.297 kb on + strand, within SO0323 at 329.297 kb on + strand, within SO0323 at 329.305 kb on - strand, within SO0323 at 329.348 kb on - strand, within SO0323 at 329.357 kb on - strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.486 kb on - strand, within SO0323 at 329.569 kb on + strand, within SO0323 at 329.694 kb on + strand, within SO0323 at 329.702 kb on - strand, within SO0323 at 329.702 kb on - strand, within SO0323 at 329.718 kb on + strand, within SO0323 at 329.726 kb on - strand, within SO0323 at 329.764 kb on - strand, within SO0323 at 329.768 kb on + strand, within SO0323 at 329.768 kb on + strand, within SO0323 at 329.791 kb on + strand, within SO0323 at 329.796 kb on + strand, within SO0323 at 329.930 kb on + strand, within SO0323 at 329.951 kb on + strand, within SO0323 at 329.991 kb on - strand at 330.201 kb on + strand, within SO0324 at 330.237 kb on + strand, within SO0324 at 330.302 kb on - strand, within SO0324 at 330.393 kb on + strand, within SO0324 at 330.452 kb on + strand, within SO0324 at 330.487 kb on - strand at 330.492 kb on - strand at 330.524 kb on - strand at 330.556 kb on + strand at 330.556 kb on + strand at 330.556 kb on + strand at 330.643 kb on - strand at 330.652 kb on + strand, within SO0325 at 330.694 kb on + strand, within SO0325 at 330.694 kb on + strand, within SO0325 at 330.707 kb on + strand, within SO0325 at 330.712 kb on - strand, within SO0325 at 330.900 kb on - strand, within SO0325 at 330.912 kb on + strand, within SO0325 at 330.947 kb on - strand at 331.155 kb on - strand at 331.196 kb on - strand at 331.287 kb on + strand at 331.355 kb on - strand, within SO0326 at 331.356 kb on - strand, within SO0326 at 331.371 kb on + strand, within SO0326 at 331.384 kb on - strand, within SO0326 at 331.415 kb on + strand, within SO0326 at 331.451 kb on + strand, within SO0326 at 331.451 kb on + strand, within SO0326 at 331.459 kb on - strand, within SO0326 at 331.472 kb on + strand, within SO0326 at 331.473 kb on + strand, within SO0326
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 329,207 + +0.1 329,207 + +1.4 329,215 - SO0323 0.10 +1.2 329,242 + SO0323 0.13 +0.2 329,242 + SO0323 0.13 -0.9 329,297 + SO0323 0.19 -0.2 329,297 + SO0323 0.19 -1.0 329,297 + SO0323 0.19 -0.7 329,305 - SO0323 0.20 -0.0 329,348 - SO0323 0.24 +0.1 329,357 - SO0323 0.25 -0.5 329,477 + SO0323 0.38 +0.2 329,477 + SO0323 0.38 +0.3 329,477 + SO0323 0.38 +0.5 329,477 + SO0323 0.38 +2.0 329,477 + SO0323 0.38 +0.5 329,477 + SO0323 0.38 -0.9 329,485 - SO0323 0.39 +0.1 329,485 - SO0323 0.39 -0.5 329,485 - SO0323 0.39 +1.3 329,485 - SO0323 0.39 +0.3 329,485 - SO0323 0.39 -0.2 329,485 - SO0323 0.39 -0.0 329,486 - SO0323 0.39 -0.4 329,569 + SO0323 0.48 +0.1 329,694 + SO0323 0.61 -0.6 329,702 - SO0323 0.62 -0.3 329,702 - SO0323 0.62 -0.1 329,718 + SO0323 0.64 +0.5 329,726 - SO0323 0.65 -0.1 329,764 - SO0323 0.69 +0.0 329,768 + SO0323 0.69 -0.2 329,768 + SO0323 0.69 -0.1 329,791 + SO0323 0.72 -0.4 329,796 + SO0323 0.72 +0.1 329,930 + SO0323 0.87 -0.4 329,951 + SO0323 0.89 +0.1 329,991 - -0.0 330,201 + SO0324 0.23 -1.4 330,237 + SO0324 0.32 +0.1 330,302 - SO0324 0.48 -0.1 330,393 + SO0324 0.71 -1.2 330,452 + SO0324 0.86 -1.0 330,487 - +0.6 330,492 - +0.7 330,524 - +0.3 330,556 + +0.4 330,556 + -1.0 330,556 + +1.3 330,643 - +0.2 330,652 + SO0325 0.11 +0.9 330,694 + SO0325 0.22 -0.6 330,694 + SO0325 0.22 +0.7 330,707 + SO0325 0.26 +0.2 330,712 - SO0325 0.27 -2.1 330,900 - SO0325 0.79 +1.6 330,912 + SO0325 0.83 +0.2 330,947 - -1.7 331,155 - +1.7 331,196 - -0.6 331,287 + -0.2 331,355 - SO0326 0.14 +0.8 331,356 - SO0326 0.14 +0.6 331,371 + SO0326 0.16 +0.5 331,384 - SO0326 0.17 +0.4 331,415 + SO0326 0.21 -0.0 331,451 + SO0326 0.24 +0.9 331,451 + SO0326 0.24 -0.8 331,459 - SO0326 0.25 -0.4 331,472 + SO0326 0.27 -0.5 331,473 + SO0326 0.27 +3.7
Or see this region's nucleotide sequence