Experiment: Choline chloride 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0795 and SO0796 are separated by 76 nucleotides SO0796 and SO0797 are separated by 254 nucleotides SO0797 and SO0798 overlap by 1 nucleotides
SO0795: SO0795 - conserved hypothetical protein (NCBI ptt file), at 807,005 to 808,783
SO0795
SO0796: SO0796 - GGDEF family protein (NCBI ptt file), at 808,860 to 809,771
SO0796
SO0797: SO0797 - hypothetical protein (NCBI ptt file), at 810,026 to 810,487
SO0797
SO0798: SO0798 - conserved hypothetical protein (NCBI ptt file), at 810,487 to 812,649
SO0798
Position (kb) 808
809
810 Strain fitness (log2 ratio) -2
-1
0
1
2 at 807.903 kb on - strand, within SO0795 at 807.917 kb on + strand, within SO0795 at 807.925 kb on - strand, within SO0795 at 807.941 kb on + strand, within SO0795 at 808.012 kb on - strand, within SO0795 at 808.036 kb on + strand, within SO0795 at 808.137 kb on - strand, within SO0795 at 808.137 kb on - strand, within SO0795 at 808.137 kb on - strand, within SO0795 at 808.159 kb on - strand, within SO0795 at 808.161 kb on - strand, within SO0795 at 808.249 kb on - strand, within SO0795 at 808.295 kb on - strand, within SO0795 at 808.322 kb on - strand, within SO0795 at 808.358 kb on - strand, within SO0795 at 808.431 kb on + strand, within SO0795 at 808.431 kb on + strand, within SO0795 at 808.481 kb on - strand, within SO0795 at 808.563 kb on - strand, within SO0795 at 808.571 kb on + strand, within SO0795 at 808.579 kb on - strand, within SO0795 at 808.646 kb on + strand at 808.665 kb on + strand at 808.695 kb on + strand at 808.703 kb on - strand at 808.753 kb on + strand at 808.834 kb on + strand at 808.867 kb on + strand at 808.936 kb on - strand at 809.086 kb on - strand, within SO0796 at 809.096 kb on - strand, within SO0796 at 809.312 kb on - strand, within SO0796 at 809.320 kb on + strand, within SO0796 at 809.332 kb on + strand, within SO0796 at 809.372 kb on + strand, within SO0796 at 809.379 kb on - strand, within SO0796 at 809.407 kb on + strand, within SO0796 at 809.496 kb on + strand, within SO0796 at 809.583 kb on + strand, within SO0796 at 809.806 kb on + strand at 809.814 kb on - strand at 809.818 kb on - strand at 809.890 kb on + strand at 809.898 kb on - strand at 809.898 kb on - strand at 809.899 kb on + strand at 809.944 kb on + strand at 810.017 kb on + strand at 810.031 kb on - strand at 810.122 kb on + strand, within SO0797 at 810.307 kb on + strand, within SO0797 at 810.332 kb on - strand, within SO0797 at 810.410 kb on - strand, within SO0797 at 810.428 kb on - strand, within SO0797 at 810.450 kb on + strand at 810.610 kb on - strand at 810.630 kb on + strand at 810.630 kb on + strand at 810.638 kb on - strand at 810.638 kb on - strand at 810.638 kb on - strand at 810.638 kb on - strand at 810.696 kb on - strand at 810.754 kb on + strand, within SO0798 at 810.754 kb on + strand, within SO0798 at 810.754 kb on + strand, within SO0798 at 810.762 kb on - strand, within SO0798 at 810.762 kb on - strand, within SO0798
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 150 mM remove 807,903 - SO0795 0.50 -0.5 807,917 + SO0795 0.51 -0.2 807,925 - SO0795 0.52 -0.4 807,941 + SO0795 0.53 -0.1 808,012 - SO0795 0.57 -0.7 808,036 + SO0795 0.58 +0.0 808,137 - SO0795 0.64 +0.5 808,137 - SO0795 0.64 +0.8 808,137 - SO0795 0.64 +1.2 808,159 - SO0795 0.65 -0.0 808,161 - SO0795 0.65 -0.3 808,249 - SO0795 0.70 +0.5 808,295 - SO0795 0.73 +0.0 808,322 - SO0795 0.74 +0.7 808,358 - SO0795 0.76 -1.1 808,431 + SO0795 0.80 -0.3 808,431 + SO0795 0.80 +1.8 808,481 - SO0795 0.83 -0.1 808,563 - SO0795 0.88 +1.3 808,571 + SO0795 0.88 -0.3 808,579 - SO0795 0.88 -0.1 808,646 + -0.2 808,665 + -0.1 808,695 + +0.4 808,703 - +0.0 808,753 + +0.7 808,834 + +0.7 808,867 + -0.0 808,936 - +0.9 809,086 - SO0796 0.25 -1.0 809,096 - SO0796 0.26 -1.5 809,312 - SO0796 0.50 +0.2 809,320 + SO0796 0.50 -0.8 809,332 + SO0796 0.52 -0.3 809,372 + SO0796 0.56 +0.5 809,379 - SO0796 0.57 -0.6 809,407 + SO0796 0.60 +0.8 809,496 + SO0796 0.70 +0.2 809,583 + SO0796 0.79 -0.7 809,806 + -0.6 809,814 - -0.4 809,818 - +0.6 809,890 + -0.1 809,898 - -0.3 809,898 - -1.1 809,899 + -1.4 809,944 + -2.4 810,017 + -1.0 810,031 - -0.6 810,122 + SO0797 0.21 -0.7 810,307 + SO0797 0.61 -0.9 810,332 - SO0797 0.66 -1.8 810,410 - SO0797 0.83 +0.2 810,428 - SO0797 0.87 -1.1 810,450 + +0.2 810,610 - -0.9 810,630 + +0.1 810,630 + +0.2 810,638 - +0.0 810,638 - -0.6 810,638 - -0.0 810,638 - +1.8 810,696 - +0.7 810,754 + SO0798 0.12 -0.9 810,754 + SO0798 0.12 +0.6 810,754 + SO0798 0.12 -1.0 810,762 - SO0798 0.13 -0.6 810,762 - SO0798 0.13 -0.3
Or see this region's nucleotide sequence