Experiment: Choline chloride 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0535 and SO0536 are separated by 9 nucleotides SO0536 and gapA-1 are separated by 190 nucleotides
SO0535: SO0535 - conserved hypothetical protein (NCBI ptt file), at 555,873 to 556,868
SO0535
SO0536: SO0536 - redox-active disulfide protein 2 (NCBI ptt file), at 556,878 to 557,114
SO0536
SO0538: gapA-1 - glyceraldehyde 3-phosphate dehydrogenase (NCBI ptt file), at 557,305 to 558,318
gapA-1
Position (kb) 556
557
558 Strain fitness (log2 ratio) -2
-1
0
1
2 at 555.942 kb on + strand at 555.950 kb on - strand at 555.950 kb on - strand at 555.950 kb on - strand at 555.950 kb on - strand at 555.950 kb on - strand at 556.047 kb on - strand, within SO0535 at 556.047 kb on - strand, within SO0535 at 556.052 kb on - strand, within SO0535 at 556.256 kb on - strand, within SO0535 at 556.257 kb on + strand, within SO0535 at 556.308 kb on - strand, within SO0535 at 556.308 kb on - strand, within SO0535 at 556.308 kb on - strand, within SO0535 at 556.364 kb on + strand, within SO0535 at 556.374 kb on + strand, within SO0535 at 556.413 kb on + strand, within SO0535 at 556.421 kb on + strand, within SO0535 at 556.436 kb on + strand, within SO0535 at 556.444 kb on - strand, within SO0535 at 556.522 kb on + strand, within SO0535 at 556.522 kb on + strand, within SO0535 at 556.527 kb on + strand, within SO0535 at 556.534 kb on + strand, within SO0535 at 556.547 kb on - strand, within SO0535 at 556.552 kb on - strand, within SO0535 at 556.584 kb on + strand, within SO0535 at 556.584 kb on + strand, within SO0535 at 556.586 kb on - strand, within SO0535 at 556.590 kb on + strand, within SO0535 at 556.590 kb on + strand, within SO0535 at 556.635 kb on - strand, within SO0535 at 556.729 kb on + strand, within SO0535 at 556.796 kb on + strand at 556.804 kb on - strand at 556.804 kb on - strand at 557.054 kb on + strand, within SO0536 at 557.054 kb on + strand, within SO0536 at 557.068 kb on + strand, within SO0536 at 557.068 kb on + strand, within SO0536 at 557.068 kb on + strand, within SO0536 at 557.068 kb on + strand, within SO0536 at 557.076 kb on - strand, within SO0536 at 557.076 kb on - strand, within SO0536 at 557.076 kb on - strand, within SO0536 at 557.145 kb on + strand at 557.153 kb on - strand at 557.153 kb on - strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.358 kb on + strand at 557.477 kb on - strand, within gapA-1 at 557.477 kb on - strand, within gapA-1 at 557.543 kb on - strand, within gapA-1 at 557.574 kb on - strand, within gapA-1 at 557.695 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.892 kb on - strand, within gapA-1 at 557.892 kb on - strand, within gapA-1 at 557.892 kb on - strand, within gapA-1 at 557.915 kb on + strand, within gapA-1 at 557.923 kb on - strand, within gapA-1 at 557.971 kb on - strand, within gapA-1 at 557.982 kb on + strand, within gapA-1 at 557.990 kb on - strand, within gapA-1 at 558.012 kb on + strand, within gapA-1 at 558.110 kb on - strand, within gapA-1
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 150 mM remove 555,942 + -0.6 555,950 - +0.1 555,950 - -1.3 555,950 - -0.2 555,950 - +0.5 555,950 - +0.3 556,047 - SO0535 0.17 -1.0 556,047 - SO0535 0.17 +1.5 556,052 - SO0535 0.18 -0.8 556,256 - SO0535 0.38 +0.5 556,257 + SO0535 0.39 -1.5 556,308 - SO0535 0.44 +0.8 556,308 - SO0535 0.44 +0.3 556,308 - SO0535 0.44 +1.0 556,364 + SO0535 0.49 +1.8 556,374 + SO0535 0.50 +0.4 556,413 + SO0535 0.54 -0.6 556,421 + SO0535 0.55 +0.8 556,436 + SO0535 0.57 +0.1 556,444 - SO0535 0.57 +0.2 556,522 + SO0535 0.65 +1.3 556,522 + SO0535 0.65 +1.0 556,527 + SO0535 0.66 -0.9 556,534 + SO0535 0.66 -0.7 556,547 - SO0535 0.68 -0.3 556,552 - SO0535 0.68 -0.2 556,584 + SO0535 0.71 -0.5 556,584 + SO0535 0.71 -0.4 556,586 - SO0535 0.72 -0.1 556,590 + SO0535 0.72 -0.0 556,590 + SO0535 0.72 +0.9 556,635 - SO0535 0.77 -0.3 556,729 + SO0535 0.86 +0.1 556,796 + -0.1 556,804 - -0.9 556,804 - -0.1 557,054 + SO0536 0.74 -0.0 557,054 + SO0536 0.74 -0.8 557,068 + SO0536 0.80 -0.0 557,068 + SO0536 0.80 -1.1 557,068 + SO0536 0.80 +0.5 557,068 + SO0536 0.80 +0.9 557,076 - SO0536 0.84 -0.7 557,076 - SO0536 0.84 -0.7 557,076 - SO0536 0.84 -0.9 557,145 + -0.0 557,153 - +0.2 557,153 - +0.2 557,348 + -0.3 557,348 + +1.3 557,348 + -0.7 557,348 + -0.1 557,348 + -0.3 557,356 - -0.1 557,356 - +0.6 557,356 - +0.0 557,356 - -0.1 557,356 - -1.0 557,356 - +0.2 557,358 + +0.3 557,477 - gapA-1 SO0538 0.17 -1.8 557,477 - gapA-1 SO0538 0.17 +0.4 557,543 - gapA-1 SO0538 0.23 +0.1 557,574 - gapA-1 SO0538 0.27 -1.3 557,695 + gapA-1 SO0538 0.38 +1.3 557,884 + gapA-1 SO0538 0.57 +0.1 557,884 + gapA-1 SO0538 0.57 -0.8 557,884 + gapA-1 SO0538 0.57 +0.1 557,884 + gapA-1 SO0538 0.57 -0.3 557,884 + gapA-1 SO0538 0.57 -0.2 557,892 - gapA-1 SO0538 0.58 -0.6 557,892 - gapA-1 SO0538 0.58 -0.1 557,892 - gapA-1 SO0538 0.58 +0.8 557,915 + gapA-1 SO0538 0.60 +0.5 557,923 - gapA-1 SO0538 0.61 +0.0 557,971 - gapA-1 SO0538 0.66 -0.2 557,982 + gapA-1 SO0538 0.67 +0.9 557,990 - gapA-1 SO0538 0.68 +0.0 558,012 + gapA-1 SO0538 0.70 +0.3 558,110 - gapA-1 SO0538 0.79 -0.5
Or see this region's nucleotide sequence