Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SOA0070 and SO_A0071 are separated by 270 nucleotides SO_A0071 and SOA0072 are separated by 5 nucleotides SOA0072 and SO_A0073 are separated by 141 nucleotides SO_A0073 and SOA0074 are separated by 37 nucleotides
SOA0070: SOA0070 - hypothetical protein (NCBI ptt file), at 56,571 to 57,275
SOA0070
SO_A0071: SO_A0071 - hypothetical protein (NCBI), at 57,546 to 57,962
_A0071
SOA0072: SOA0072 - conserved hypothetical protein (NCBI ptt file), at 57,968 to 58,279
SOA0072
SO_A0073: SO_A0073 - no description, at 58,421 to 58,696
_A0073
SOA0074: SOA0074 - ISSod6, transposase (NCBI ptt file), at 58,734 to 59,492
SOA0074
Position (kb) 57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 56.553 kb on + strand at 56.596 kb on + strand at 56.596 kb on + strand at 56.596 kb on + strand at 56.596 kb on + strand at 56.596 kb on + strand at 56.596 kb on + strand at 56.596 kb on + strand at 56.596 kb on + strand at 56.601 kb on + strand at 56.604 kb on - strand at 56.604 kb on - strand at 56.604 kb on - strand at 56.648 kb on - strand, within SOA0070 at 56.654 kb on + strand, within SOA0070 at 56.657 kb on - strand, within SOA0070 at 56.662 kb on - strand, within SOA0070 at 56.667 kb on - strand, within SOA0070 at 56.667 kb on - strand, within SOA0070 at 56.755 kb on + strand, within SOA0070 at 56.755 kb on + strand, within SOA0070 at 56.844 kb on + strand, within SOA0070 at 56.844 kb on + strand, within SOA0070 at 56.861 kb on + strand, within SOA0070 at 56.876 kb on + strand, within SOA0070 at 56.885 kb on + strand, within SOA0070 at 56.890 kb on + strand, within SOA0070 at 56.893 kb on - strand, within SOA0070 at 56.913 kb on - strand, within SOA0070 at 56.949 kb on - strand, within SOA0070 at 56.954 kb on - strand, within SOA0070 at 56.954 kb on - strand, within SOA0070 at 56.996 kb on + strand, within SOA0070 at 56.996 kb on + strand, within SOA0070 at 57.003 kb on - strand, within SOA0070 at 57.004 kb on - strand, within SOA0070 at 57.004 kb on - strand, within SOA0070 at 57.007 kb on - strand, within SOA0070 at 57.015 kb on + strand, within SOA0070 at 57.032 kb on + strand, within SOA0070 at 57.105 kb on + strand, within SOA0070 at 57.108 kb on - strand, within SOA0070 at 57.121 kb on + strand, within SOA0070 at 57.162 kb on - strand, within SOA0070 at 57.296 kb on + strand at 57.297 kb on + strand at 57.305 kb on - strand at 57.361 kb on - strand at 57.371 kb on + strand at 57.376 kb on + strand at 57.382 kb on - strand at 57.477 kb on - strand at 57.478 kb on - strand at 57.479 kb on + strand at 57.479 kb on - strand at 57.479 kb on - strand at 57.515 kb on + strand at 57.516 kb on + strand at 57.525 kb on + strand at 57.612 kb on - strand, within SO_A0071 at 57.612 kb on - strand, within SO_A0071 at 57.709 kb on - strand, within SO_A0071 at 57.730 kb on - strand, within SO_A0071 at 57.986 kb on + strand at 58.008 kb on - strand, within SOA0072 at 58.008 kb on - strand, within SOA0072 at 58.008 kb on - strand, within SOA0072 at 58.048 kb on - strand, within SOA0072 at 58.107 kb on - strand, within SOA0072 at 58.162 kb on + strand, within SOA0072 at 58.177 kb on + strand, within SOA0072 at 58.187 kb on + strand, within SOA0072 at 58.194 kb on - strand, within SOA0072 at 58.205 kb on - strand, within SOA0072 at 58.205 kb on - strand, within SOA0072 at 58.243 kb on - strand, within SOA0072 at 58.289 kb on - strand at 58.346 kb on - strand at 58.351 kb on - strand at 58.409 kb on + strand at 58.417 kb on - strand at 58.451 kb on - strand, within SO_A0073 at 58.474 kb on + strand, within SO_A0073 at 58.479 kb on + strand, within SO_A0073 at 58.490 kb on + strand, within SO_A0073 at 58.492 kb on + strand, within SO_A0073 at 58.492 kb on - strand, within SO_A0073 at 58.546 kb on - strand, within SO_A0073 at 58.570 kb on + strand, within SO_A0073 at 58.570 kb on + strand, within SO_A0073 at 58.570 kb on + strand, within SO_A0073 at 58.570 kb on + strand, within SO_A0073 at 58.570 kb on + strand, within SO_A0073 at 58.570 kb on + strand, within SO_A0073 at 58.570 kb on + strand, within SO_A0073 at 58.570 kb on + strand, within SO_A0073 at 58.570 kb on + strand, within SO_A0073 at 58.578 kb on - strand, within SO_A0073 at 58.578 kb on - strand, within SO_A0073 at 58.578 kb on - strand, within SO_A0073 at 58.578 kb on - strand, within SO_A0073 at 58.578 kb on - strand, within SO_A0073 at 58.581 kb on + strand, within SO_A0073 at 58.585 kb on + strand, within SO_A0073 at 58.593 kb on + strand, within SO_A0073 at 58.625 kb on + strand, within SO_A0073 at 58.644 kb on + strand, within SO_A0073 at 58.647 kb on - strand, within SO_A0073 at 58.652 kb on - strand, within SO_A0073 at 58.660 kb on - strand, within SO_A0073 at 58.668 kb on + strand, within SO_A0073 at 58.676 kb on - strand at 58.714 kb on - strand at 58.716 kb on - strand at 58.719 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 56,553 + +0.3 56,596 + -0.8 56,596 + +0.8 56,596 + -0.3 56,596 + +1.4 56,596 + +0.2 56,596 + +0.5 56,596 + +0.8 56,596 + -0.4 56,601 + -1.7 56,604 - +0.2 56,604 - +0.9 56,604 - +0.7 56,648 - SOA0070 0.11 -0.5 56,654 + SOA0070 0.12 -0.4 56,657 - SOA0070 0.12 -1.3 56,662 - SOA0070 0.13 +0.1 56,667 - SOA0070 0.14 -0.4 56,667 - SOA0070 0.14 -0.4 56,755 + SOA0070 0.26 -0.2 56,755 + SOA0070 0.26 +0.3 56,844 + SOA0070 0.39 -0.3 56,844 + SOA0070 0.39 +0.1 56,861 + SOA0070 0.41 -0.7 56,876 + SOA0070 0.43 -0.2 56,885 + SOA0070 0.45 -0.8 56,890 + SOA0070 0.45 -0.8 56,893 - SOA0070 0.46 -0.5 56,913 - SOA0070 0.49 -0.5 56,949 - SOA0070 0.54 -0.3 56,954 - SOA0070 0.54 -0.4 56,954 - SOA0070 0.54 +4.7 56,996 + SOA0070 0.60 +1.2 56,996 + SOA0070 0.60 +0.3 57,003 - SOA0070 0.61 +0.5 57,004 - SOA0070 0.61 -0.2 57,004 - SOA0070 0.61 +1.1 57,007 - SOA0070 0.62 -0.4 57,015 + SOA0070 0.63 +0.0 57,032 + SOA0070 0.65 -1.3 57,105 + SOA0070 0.76 +0.3 57,108 - SOA0070 0.76 -1.8 57,121 + SOA0070 0.78 -0.3 57,162 - SOA0070 0.84 -1.1 57,296 + -1.3 57,297 + +0.0 57,305 - -0.6 57,361 - +0.7 57,371 + -2.0 57,376 + -0.8 57,382 - +0.1 57,477 - +1.2 57,478 - -0.2 57,479 + +0.8 57,479 - -1.5 57,479 - -0.0 57,515 + +0.2 57,516 + +0.1 57,525 + -0.5 57,612 - SO_A0071 0.16 -1.5 57,612 - SO_A0071 0.16 +0.4 57,709 - SO_A0071 0.39 -3.5 57,730 - SO_A0071 0.44 -0.5 57,986 + +0.8 58,008 - SOA0072 0.13 +1.0 58,008 - SOA0072 0.13 -1.1 58,008 - SOA0072 0.13 +0.1 58,048 - SOA0072 0.26 +1.8 58,107 - SOA0072 0.45 +1.0 58,162 + SOA0072 0.62 +0.6 58,177 + SOA0072 0.67 -0.2 58,187 + SOA0072 0.70 +0.8 58,194 - SOA0072 0.72 -0.3 58,205 - SOA0072 0.76 -0.4 58,205 - SOA0072 0.76 -0.9 58,243 - SOA0072 0.88 +1.1 58,289 - +0.1 58,346 - -0.1 58,351 - -0.2 58,409 + -0.1 58,417 - +0.4 58,451 - SO_A0073 0.11 -0.4 58,474 + SO_A0073 0.19 -1.6 58,479 + SO_A0073 0.21 -0.2 58,490 + SO_A0073 0.25 -0.2 58,492 + SO_A0073 0.26 +0.2 58,492 - SO_A0073 0.26 -0.4 58,546 - SO_A0073 0.45 -0.0 58,570 + SO_A0073 0.54 +0.8 58,570 + SO_A0073 0.54 -0.2 58,570 + SO_A0073 0.54 -0.8 58,570 + SO_A0073 0.54 -0.7 58,570 + SO_A0073 0.54 -0.2 58,570 + SO_A0073 0.54 +0.6 58,570 + SO_A0073 0.54 +0.7 58,570 + SO_A0073 0.54 -0.3 58,570 + SO_A0073 0.54 +0.5 58,578 - SO_A0073 0.57 -0.6 58,578 - SO_A0073 0.57 -1.5 58,578 - SO_A0073 0.57 +0.4 58,578 - SO_A0073 0.57 +0.4 58,578 - SO_A0073 0.57 -1.2 58,581 + SO_A0073 0.58 +1.4 58,585 + SO_A0073 0.59 +0.1 58,593 + SO_A0073 0.62 -0.0 58,625 + SO_A0073 0.74 +0.9 58,644 + SO_A0073 0.81 +0.3 58,647 - SO_A0073 0.82 +0.9 58,652 - SO_A0073 0.84 +0.3 58,660 - SO_A0073 0.87 +0.6 58,668 + SO_A0073 0.89 -0.9 58,676 - -0.3 58,714 - +0.4 58,716 - -1.3 58,719 - +0.6
Or see this region's nucleotide sequence