Strain Fitness in Shewanella oneidensis MR-1 around SO4264
Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | L-Glutamic (N) |
---|---|---|---|---|---|
remove | |||||
4,438,664 | - | SO4262 | 0.50 | +0.6 | |
4,438,666 | + | SO4262 | 0.50 | +0.1 | |
4,438,674 | - | SO4262 | 0.52 | -0.5 | |
4,438,690 | - | SO4262 | 0.55 | -0.7 | |
4,438,699 | + | SO4262 | 0.57 | -0.1 | |
4,438,704 | + | SO4262 | 0.58 | +0.3 | |
4,438,707 | - | SO4262 | 0.58 | -0.3 | |
4,438,707 | - | SO4262 | 0.58 | +0.3 | |
4,438,744 | - | SO4262 | 0.66 | +0.8 | |
4,438,771 | - | SO4262 | 0.71 | +0.1 | |
4,438,855 | + | SO4262 | 0.88 | -1.2 | |
4,438,873 | + | +1.4 | |||
4,438,881 | - | -0.2 | |||
4,438,895 | + | +0.2 | |||
4,438,907 | - | +0.3 | |||
4,438,907 | - | +0.3 | |||
4,438,916 | + | -1.1 | |||
4,438,918 | - | +1.4 | |||
4,438,918 | - | -0.6 | |||
4,438,967 | - | -0.6 | |||
4,438,990 | - | SO4263 | 0.11 | +0.3 | |
4,438,997 | + | SO4263 | 0.12 | -1.1 | |
4,439,039 | + | SO4263 | 0.18 | -1.0 | |
4,439,053 | + | SO4263 | 0.20 | -0.7 | |
4,439,053 | + | SO4263 | 0.20 | +1.0 | |
4,439,061 | - | SO4263 | 0.21 | -0.1 | |
4,439,062 | - | SO4263 | 0.21 | -0.4 | |
4,439,068 | - | SO4263 | 0.22 | +1.4 | |
4,439,096 | + | SO4263 | 0.26 | +0.8 | |
4,439,096 | + | SO4263 | 0.26 | -0.1 | |
4,439,096 | + | SO4263 | 0.26 | +0.3 | |
4,439,096 | + | SO4263 | 0.26 | +0.0 | |
4,439,096 | + | SO4263 | 0.26 | +1.0 | |
4,439,096 | + | SO4263 | 0.26 | +0.3 | |
4,439,096 | + | SO4263 | 0.26 | -1.0 | |
4,439,096 | + | SO4263 | 0.26 | +0.4 | |
4,439,101 | + | SO4263 | 0.27 | +0.2 | |
4,439,104 | - | SO4263 | 0.27 | -0.0 | |
4,439,104 | - | +0.8 | |||
4,439,104 | - | SO4263 | 0.27 | -0.5 | |
4,439,104 | - | SO4263 | 0.27 | -1.1 | |
4,439,104 | - | SO4263 | 0.27 | +0.3 | |
4,439,104 | - | SO4263 | 0.27 | +0.4 | |
4,439,104 | - | SO4263 | 0.27 | -0.2 | |
4,439,104 | - | SO4263 | 0.27 | -0.2 | |
4,439,104 | - | SO4263 | 0.27 | +0.5 | |
4,439,109 | - | SO4263 | 0.28 | -0.1 | |
4,439,121 | - | SO4263 | 0.30 | -0.0 | |
4,439,141 | + | SO4263 | 0.33 | -0.5 | |
4,439,141 | + | SO4263 | 0.33 | +0.9 | |
4,439,149 | - | SO4263 | 0.34 | -0.2 | |
4,439,149 | - | SO4263 | 0.34 | -0.5 | |
4,439,249 | + | SO4263 | 0.48 | +0.1 | |
4,439,292 | - | SO4263 | 0.54 | -0.5 | |
4,439,364 | - | SO4263 | 0.64 | -1.9 | |
4,439,425 | - | SO4263 | 0.73 | -0.1 | |
4,439,425 | - | SO4263 | 0.73 | +0.5 | |
4,439,433 | - | SO4263 | 0.74 | -0.1 | |
4,439,454 | + | SO4263 | 0.77 | -0.2 | |
4,439,454 | + | SO4263 | 0.77 | +1.2 | |
4,439,462 | - | SO4263 | 0.78 | +0.9 | |
4,439,467 | - | SO4263 | 0.79 | +0.1 | |
4,439,470 | + | SO4263 | 0.79 | -1.9 | |
4,439,478 | - | SO4263 | 0.80 | -0.6 | |
4,439,484 | - | SO4263 | 0.81 | -0.4 | |
4,439,484 | - | SO4263 | 0.81 | -0.3 | |
4,439,484 | - | SO4263 | 0.81 | -0.2 | |
4,439,538 | + | SO4263 | 0.89 | +0.7 | |
4,439,546 | - | -0.5 | |||
4,439,547 | + | -0.2 | |||
4,439,547 | - | -1.0 | |||
4,439,604 | + | +1.1 | |||
4,439,617 | + | -0.2 | |||
4,439,618 | + | +0.4 | |||
4,439,618 | + | +0.6 | |||
4,439,618 | + | +0.7 | |||
4,439,623 | + | +1.2 | |||
4,439,624 | + | -0.4 | |||
4,439,658 | - | +0.1 | |||
4,439,732 | - | -0.2 | |||
4,439,732 | - | +1.0 | |||
4,439,732 | - | +0.3 | |||
4,439,744 | + | -1.1 | |||
4,439,751 | + | +0.7 | |||
4,439,752 | - | +0.7 | |||
4,439,765 | + | +0.0 | |||
4,439,782 | - | hsdS-2 | SO4264 | 0.10 | -0.2 |
4,439,813 | + | hsdS-2 | SO4264 | 0.13 | +0.3 |
4,439,813 | + | hsdS-2 | SO4264 | 0.13 | +0.4 |
4,439,813 | + | hsdS-2 | SO4264 | 0.13 | +0.6 |
4,439,813 | + | hsdS-2 | SO4264 | 0.13 | -0.1 |
4,439,818 | + | hsdS-2 | SO4264 | 0.13 | -0.7 |
4,439,821 | - | hsdS-2 | SO4264 | 0.13 | -0.0 |
4,439,821 | - | hsdS-2 | SO4264 | 0.13 | +0.2 |
4,439,821 | - | hsdS-2 | SO4264 | 0.13 | -0.4 |
4,439,821 | - | hsdS-2 | SO4264 | 0.13 | +0.1 |
4,439,821 | - | hsdS-2 | SO4264 | 0.13 | -0.3 |
4,439,821 | - | hsdS-2 | SO4264 | 0.13 | -0.8 |
4,439,821 | - | hsdS-2 | SO4264 | 0.13 | -0.2 |
4,439,826 | - | hsdS-2 | SO4264 | 0.13 | +0.5 |
4,439,832 | - | hsdS-2 | SO4264 | 0.14 | -0.9 |
4,439,846 | + | hsdS-2 | SO4264 | 0.15 | -0.5 |
4,439,854 | + | hsdS-2 | SO4264 | 0.15 | -0.1 |
4,439,856 | - | hsdS-2 | SO4264 | 0.15 | +0.4 |
4,439,911 | - | hsdS-2 | SO4264 | 0.19 | +0.4 |
4,439,985 | + | hsdS-2 | SO4264 | 0.24 | +1.4 |
4,440,012 | + | hsdS-2 | SO4264 | 0.26 | -0.7 |
4,440,030 | - | hsdS-2 | SO4264 | 0.27 | +1.0 |
4,440,032 | + | hsdS-2 | SO4264 | 0.27 | -0.7 |
4,440,032 | + | hsdS-2 | SO4264 | 0.27 | -0.2 |
4,440,077 | + | hsdS-2 | SO4264 | 0.30 | -0.2 |
4,440,077 | + | hsdS-2 | SO4264 | 0.30 | +0.7 |
4,440,077 | + | hsdS-2 | SO4264 | 0.30 | -0.3 |
4,440,085 | - | hsdS-2 | SO4264 | 0.31 | +0.2 |
4,440,085 | - | hsdS-2 | SO4264 | 0.31 | +0.3 |
4,440,085 | - | hsdS-2 | SO4264 | 0.31 | -1.3 |
4,440,129 | + | hsdS-2 | SO4264 | 0.34 | +0.1 |
4,440,150 | + | hsdS-2 | SO4264 | 0.35 | -0.3 |
4,440,150 | + | hsdS-2 | SO4264 | 0.35 | -0.8 |
4,440,150 | + | hsdS-2 | SO4264 | 0.35 | -0.1 |
4,440,158 | - | hsdS-2 | SO4264 | 0.36 | -2.1 |
4,440,236 | + | hsdS-2 | SO4264 | 0.41 | -0.9 |
4,440,241 | + | hsdS-2 | SO4264 | 0.41 | -0.1 |
4,440,244 | - | hsdS-2 | SO4264 | 0.42 | +0.5 |
4,440,245 | - | hsdS-2 | SO4264 | 0.42 | +0.6 |
4,440,279 | + | hsdS-2 | SO4264 | 0.44 | +1.8 |
4,440,282 | - | hsdS-2 | SO4264 | 0.44 | -0.3 |
4,440,307 | + | hsdS-2 | SO4264 | 0.46 | +0.7 |
4,440,312 | + | hsdS-2 | SO4264 | 0.46 | -0.5 |
4,440,327 | - | hsdS-2 | SO4264 | 0.47 | -1.2 |
4,440,332 | + | hsdS-2 | SO4264 | 0.47 | -1.2 |
4,440,332 | + | hsdS-2 | SO4264 | 0.47 | -0.2 |
4,440,332 | + | hsdS-2 | SO4264 | 0.47 | +0.1 |
4,440,332 | + | hsdS-2 | SO4264 | 0.47 | +0.3 |
4,440,332 | + | hsdS-2 | SO4264 | 0.47 | +1.1 |
4,440,333 | + | hsdS-2 | SO4264 | 0.48 | -0.3 |
4,440,335 | - | hsdS-2 | SO4264 | 0.48 | -0.7 |
4,440,340 | - | hsdS-2 | SO4264 | 0.48 | +0.4 |
4,440,340 | - | hsdS-2 | SO4264 | 0.48 | -0.8 |
4,440,343 | + | hsdS-2 | SO4264 | 0.48 | +0.0 |
4,440,346 | - | hsdS-2 | SO4264 | 0.48 | -0.5 |
4,440,351 | - | hsdS-2 | SO4264 | 0.49 | +0.3 |
4,440,356 | + | hsdS-2 | SO4264 | 0.49 | -0.7 |
4,440,364 | - | hsdS-2 | SO4264 | 0.50 | +0.0 |
4,440,364 | - | hsdS-2 | SO4264 | 0.50 | +0.2 |
4,440,381 | + | hsdS-2 | SO4264 | 0.51 | +0.1 |
4,440,387 | - | hsdS-2 | SO4264 | 0.51 | -0.8 |
4,440,389 | - | hsdS-2 | SO4264 | 0.51 | +0.0 |
4,440,419 | - | hsdS-2 | SO4264 | 0.53 | -0.4 |
4,440,437 | + | hsdS-2 | SO4264 | 0.55 | -0.8 |
4,440,437 | + | hsdS-2 | SO4264 | 0.55 | +0.0 |
4,440,437 | + | hsdS-2 | SO4264 | 0.55 | -1.0 |
4,440,445 | - | hsdS-2 | SO4264 | 0.55 | -0.5 |
4,440,445 | - | hsdS-2 | SO4264 | 0.55 | -0.4 |
4,440,447 | - | hsdS-2 | SO4264 | 0.55 | +0.4 |
4,440,452 | - | hsdS-2 | SO4264 | 0.56 | +0.9 |
4,440,459 | + | hsdS-2 | SO4264 | 0.56 | -0.1 |
4,440,581 | + | hsdS-2 | SO4264 | 0.64 | -0.0 |
4,440,581 | + | hsdS-2 | SO4264 | 0.64 | -0.1 |
4,440,589 | - | hsdS-2 | SO4264 | 0.65 | +0.1 |
4,440,591 | + | hsdS-2 | SO4264 | 0.65 | -0.4 |
4,440,625 | - | hsdS-2 | SO4264 | 0.67 | -2.6 |
4,440,643 | - | hsdS-2 | SO4264 | 0.68 | -0.7 |
4,440,652 | - | hsdS-2 | SO4264 | 0.69 | +0.5 |
4,440,695 | + | hsdS-2 | SO4264 | 0.72 | +0.0 |
4,440,695 | + | hsdS-2 | SO4264 | 0.72 | -0.7 |
4,440,695 | + | hsdS-2 | SO4264 | 0.72 | +0.6 |
4,440,698 | - | hsdS-2 | SO4264 | 0.72 | +0.1 |
4,440,703 | - | hsdS-2 | SO4264 | 0.72 | +0.3 |
4,440,706 | + | hsdS-2 | SO4264 | 0.73 | +0.2 |
4,440,706 | + | hsdS-2 | SO4264 | 0.73 | +1.1 |
4,440,714 | - | hsdS-2 | SO4264 | 0.73 | -1.0 |
4,440,714 | - | hsdS-2 | SO4264 | 0.73 | +0.5 |
4,440,772 | - | hsdS-2 | SO4264 | 0.77 | -1.5 |
4,440,772 | - | hsdS-2 | SO4264 | 0.77 | +0.0 |
4,440,791 | - | hsdS-2 | SO4264 | 0.78 | +0.3 |
4,440,801 | - | hsdS-2 | SO4264 | 0.79 | +0.8 |
4,440,801 | - | hsdS-2 | SO4264 | 0.79 | -0.6 |
4,440,806 | + | hsdS-2 | SO4264 | 0.79 | +1.7 |
4,440,808 | - | hsdS-2 | SO4264 | 0.79 | +1.8 |
4,440,819 | - | hsdS-2 | SO4264 | 0.80 | +0.1 |
4,440,823 | + | hsdS-2 | SO4264 | 0.80 | +1.1 |
4,440,845 | - | hsdS-2 | SO4264 | 0.82 | -0.3 |
4,440,925 | + | hsdS-2 | SO4264 | 0.87 | +1.4 |
4,440,925 | + | hsdS-2 | SO4264 | 0.87 | +0.1 |
4,440,935 | + | hsdS-2 | SO4264 | 0.88 | -0.7 |
4,440,935 | + | hsdS-2 | SO4264 | 0.88 | -0.4 |
4,440,935 | + | hsdS-2 | SO4264 | 0.88 | +0.8 |
4,440,935 | + | hsdS-2 | SO4264 | 0.88 | +0.5 |
4,440,935 | + | hsdS-2 | SO4264 | 0.88 | +0.0 |
4,440,935 | + | hsdS-2 | SO4264 | 0.88 | -0.5 |
4,440,935 | + | hsdS-2 | SO4264 | 0.88 | +0.1 |
4,440,935 | + | hsdS-2 | SO4264 | 0.88 | +0.5 |
4,440,935 | + | hsdS-2 | SO4264 | 0.88 | +0.1 |
4,440,935 | + | hsdS-2 | SO4264 | 0.88 | -0.4 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | -1.9 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | +0.1 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | +0.4 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | -0.5 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | +2.5 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | -1.3 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | +0.5 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | -0.0 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | +0.6 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | -0.4 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | -0.3 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | +0.1 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | +0.5 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | -1.0 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | -0.3 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | -1.1 |
4,440,943 | - | hsdS-2 | SO4264 | 0.89 | +0.2 |
4,440,954 | + | hsdS-2 | SO4264 | 0.89 | -0.5 |
4,440,954 | + | hsdS-2 | SO4264 | 0.89 | +0.1 |
4,440,956 | - | hsdS-2 | SO4264 | 0.89 | +0.9 |
4,440,962 | - | hsdS-2 | SO4264 | 0.90 | +1.2 |
4,440,962 | - | hsdS-2 | SO4264 | 0.90 | +0.9 |
4,440,995 | - | -0.2 | |||
4,441,069 | + | -0.1 | |||
4,441,069 | + | +0.5 | |||
4,441,069 | + | -0.5 | |||
4,441,069 | + | -0.7 | |||
4,441,069 | + | +0.6 | |||
4,441,069 | + | -0.8 | |||
4,441,069 | + | -0.1 | |||
4,441,069 | + | -0.0 | |||
4,441,069 | + | -0.9 | |||
4,441,069 | + | -0.2 | |||
4,441,069 | + | +0.0 | |||
4,441,077 | - | -0.3 | |||
4,441,077 | - | +0.1 | |||
4,441,077 | - | -0.7 | |||
4,441,077 | - | -1.1 | |||
4,441,077 | - | +0.2 | |||
4,441,077 | - | -0.4 | |||
4,441,077 | - | +0.6 | |||
4,441,077 | - | +1.1 | |||
4,441,077 | - | -0.3 | |||
4,441,077 | - | -0.6 | |||
4,441,077 | - | -0.7 | |||
4,441,077 | - | -0.1 | |||
4,441,087 | - | +1.8 | |||
4,441,087 | - | -0.0 | |||
4,441,103 | + | +0.2 | |||
4,441,116 | - | -0.2 | |||
4,441,134 | - | -0.1 | |||
4,441,134 | - | +0.1 | |||
4,441,134 | - | +1.8 | |||
4,441,180 | + | -0.6 | |||
4,441,180 | + | -0.2 | |||
4,441,180 | + | +1.5 | |||
4,441,180 | + | +0.3 | |||
4,441,180 | + | -0.1 | |||
4,441,188 | - | -1.3 | |||
4,441,188 | - | +0.2 | |||
4,441,188 | - | +0.0 | |||
4,441,188 | - | +0.1 | |||
4,441,195 | - | -0.5 | |||
4,441,200 | - | -1.4 | |||
4,441,212 | + | +0.1 | |||
4,441,214 | - | +0.2 | |||
4,441,256 | + | -0.4 | |||
4,441,277 | - | hsdM-2 | SO4265 | 0.10 | +0.5 |
4,441,285 | + | hsdM-2 | SO4265 | 0.11 | -0.3 |
4,441,293 | - | hsdM-2 | SO4265 | 0.11 | -1.1 |
4,441,341 | + | hsdM-2 | SO4265 | 0.14 | -0.3 |
4,441,348 | + | hsdM-2 | SO4265 | 0.15 | +0.1 |
4,441,349 | - | hsdM-2 | SO4265 | 0.15 | +0.1 |
4,441,411 | + | hsdM-2 | SO4265 | 0.19 | -0.6 |
4,441,475 | - | hsdM-2 | SO4265 | 0.23 | +0.5 |
4,441,489 | + | hsdM-2 | SO4265 | 0.23 | +0.4 |
4,441,568 | - | hsdM-2 | SO4265 | 0.28 | +0.0 |
4,441,612 | + | hsdM-2 | SO4265 | 0.31 | -0.2 |
4,441,638 | - | hsdM-2 | SO4265 | 0.33 | -0.1 |
4,441,645 | + | hsdM-2 | SO4265 | 0.33 | +0.3 |
4,441,653 | - | hsdM-2 | SO4265 | 0.34 | -0.1 |
4,441,658 | - | hsdM-2 | SO4265 | 0.34 | -0.8 |
4,441,684 | + | hsdM-2 | SO4265 | 0.36 | +0.4 |
4,441,718 | - | hsdM-2 | SO4265 | 0.38 | +0.1 |
4,441,746 | - | hsdM-2 | SO4265 | 0.39 | +1.0 |
4,441,789 | - | hsdM-2 | SO4265 | 0.42 | +0.2 |
4,441,828 | - | hsdM-2 | SO4265 | 0.44 | +0.0 |
4,441,847 | - | hsdM-2 | SO4265 | 0.46 | +0.6 |
4,441,927 | - | hsdM-2 | SO4265 | 0.51 | +0.3 |
Or see this region's nucleotide sequence