Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4232 and leuD are separated by 530 nucleotides leuD and leuC are separated by 24 nucleotides
SO4232: SO4232 - long-chain fatty acid transport protein (NCBI ptt file), at 4,408,573 to 4,409,886
SO4232
SO4233: leuD - 3-isopropylmalate dehydratase, small subunit (NCBI ptt file), at 4,410,417 to 4,411,022
leuD
SO4234: leuC - 3-isopropylmalate dehydratase, large subunit (NCBI ptt file), at 4,411,047 to 4,412,471
leuC
Position (kb) 4410
4411
4412 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4409.494 kb on + strand, within SO4232 at 4409.520 kb on - strand, within SO4232 at 4409.520 kb on - strand, within SO4232 at 4409.525 kb on - strand, within SO4232 at 4409.628 kb on - strand, within SO4232 at 4409.635 kb on - strand, within SO4232 at 4409.636 kb on - strand, within SO4232 at 4409.636 kb on - strand, within SO4232 at 4409.704 kb on + strand, within SO4232 at 4409.733 kb on - strand, within SO4232 at 4409.776 kb on + strand at 4409.776 kb on + strand at 4409.776 kb on + strand at 4409.783 kb on - strand at 4409.784 kb on - strand at 4409.805 kb on + strand at 4409.819 kb on - strand at 4409.847 kb on - strand at 4409.863 kb on - strand at 4410.477 kb on + strand at 4410.477 kb on + strand at 4410.482 kb on + strand, within leuD at 4410.485 kb on - strand, within leuD at 4410.485 kb on - strand, within leuD at 4410.485 kb on - strand, within leuD at 4410.491 kb on + strand, within leuD at 4410.491 kb on + strand, within leuD at 4410.681 kb on - strand, within leuD at 4410.834 kb on + strand, within leuD at 4410.837 kb on - strand, within leuD at 4410.837 kb on - strand, within leuD at 4410.951 kb on + strand, within leuD at 4411.054 kb on + strand at 4411.062 kb on - strand at 4411.113 kb on + strand at 4411.113 kb on + strand at 4411.121 kb on - strand at 4411.121 kb on - strand at 4411.130 kb on + strand at 4411.147 kb on - strand at 4411.220 kb on + strand, within leuC at 4411.220 kb on + strand, within leuC at 4411.320 kb on - strand, within leuC at 4411.349 kb on + strand, within leuC at 4411.388 kb on - strand, within leuC at 4411.471 kb on + strand, within leuC at 4411.621 kb on - strand, within leuC at 4411.624 kb on - strand, within leuC at 4411.626 kb on + strand, within leuC at 4411.651 kb on - strand, within leuC at 4411.680 kb on + strand, within leuC at 4411.715 kb on + strand, within leuC at 4411.768 kb on - strand, within leuC at 4411.815 kb on - strand, within leuC at 4411.928 kb on - strand, within leuC
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 4,409,494 + SO4232 0.70 -0.7 4,409,520 - SO4232 0.72 -0.3 4,409,520 - SO4232 0.72 +1.7 4,409,525 - SO4232 0.72 -0.8 4,409,628 - SO4232 0.80 -0.4 4,409,635 - SO4232 0.81 -1.1 4,409,636 - SO4232 0.81 +0.5 4,409,636 - SO4232 0.81 +0.3 4,409,704 + SO4232 0.86 -1.0 4,409,733 - SO4232 0.88 +0.7 4,409,776 + +0.9 4,409,776 + -1.0 4,409,776 + +0.1 4,409,783 - +1.8 4,409,784 - +0.9 4,409,805 + +0.4 4,409,819 - -0.3 4,409,847 - -1.2 4,409,863 - +1.0 4,410,477 + -4.5 4,410,477 + -3.7 4,410,482 + leuD SO4233 0.11 -2.6 4,410,485 - leuD SO4233 0.11 +0.0 4,410,485 - leuD SO4233 0.11 -3.3 4,410,485 - leuD SO4233 0.11 -4.6 4,410,491 + leuD SO4233 0.12 -4.2 4,410,491 + leuD SO4233 0.12 -2.1 4,410,681 - leuD SO4233 0.44 -2.0 4,410,834 + leuD SO4233 0.69 -2.8 4,410,837 - leuD SO4233 0.69 -3.9 4,410,837 - leuD SO4233 0.69 -4.4 4,410,951 + leuD SO4233 0.88 -2.8 4,411,054 + -1.6 4,411,062 - -2.2 4,411,113 + -2.3 4,411,113 + -4.3 4,411,121 - -3.3 4,411,121 - -3.9 4,411,130 + -0.8 4,411,147 - -4.1 4,411,220 + leuC SO4234 0.12 -1.9 4,411,220 + leuC SO4234 0.12 -0.1 4,411,320 - leuC SO4234 0.19 -3.3 4,411,349 + leuC SO4234 0.21 -3.9 4,411,388 - leuC SO4234 0.24 -2.0 4,411,471 + leuC SO4234 0.30 -2.1 4,411,621 - leuC SO4234 0.40 -1.7 4,411,624 - leuC SO4234 0.40 -3.1 4,411,626 + leuC SO4234 0.41 -3.6 4,411,651 - leuC SO4234 0.42 -3.7 4,411,680 + leuC SO4234 0.44 -2.3 4,411,715 + leuC SO4234 0.47 -2.5 4,411,768 - leuC SO4234 0.51 -2.2 4,411,815 - leuC SO4234 0.54 -4.3 4,411,928 - leuC SO4234 0.62 -2.0
Or see this region's nucleotide sequence