Strain Fitness in Shewanella oneidensis MR-1 around SO4227

Experiment: L-Glutamic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntftsI and ftsL are separated by 13 nucleotidesftsL and SO4227 are separated by 11 nucleotidesSO4227 and SO4228 are separated by 30 nucleotides SO4225: ftsI - peptidoglycan synthetase FtsI (NCBI ptt file), at 4,400,705 to 4,402,456 ftsI SO4226: ftsL - cell division protein FtsL (NCBI ptt file), at 4,402,470 to 4,402,784 ftsL SO4227: SO4227 - conserved hypothetical protein TIGR00006 (NCBI ptt file), at 4,402,796 to 4,403,737 SO4227 SO4228: SO4228 - conserved hypothetical protein TIGR00242 (NCBI ptt file), at 4,403,768 to 4,404,226 SO4228 Position (kb) 4402 4403 4404Strain fitness (log2 ratio) -1 0 1at 4402.828 kb on - strandat 4402.828 kb on - strandat 4402.948 kb on - strand, within SO4227at 4404.089 kb on - strand, within SO4228at 4404.089 kb on - strand, within SO4228at 4404.154 kb on - strand, within SO4228at 4404.243 kb on - strandat 4404.437 kb on + strandat 4404.437 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
remove
4,402,828 - -0.5
4,402,828 - -1.2
4,402,948 - SO4227 0.16 -1.1
4,404,089 - SO4228 0.70 +1.0
4,404,089 - SO4228 0.70 -1.5
4,404,154 - SO4228 0.84 -0.4
4,404,243 - -0.9
4,404,437 + +0.6
4,404,437 + +0.4

Or see this region's nucleotide sequence