Strain Fitness in Shewanella oneidensis MR-1

Strain Fitness in Shewanella oneidensis MR-1 around SO1602

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	L-Glutamic (N)
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1,677,570	+	SO_1600	0.58	-0.1
1,677,592	+	SO_1600	0.59	-0.4
1,677,592	+	SO_1600	0.59	+0.4
1,677,733	+	SO_1600	0.65	-1.8
1,677,822	-	SO_1600	0.68	-1.9
1,677,822	-	SO_1600	0.68	-2.9
1,677,832	+			+0.4
1,677,838	+	SO_1600	0.69	-1.3
1,677,839	+	SO_1600	0.69	-0.6
1,677,840	-	SO_1600	0.69	-0.1
1,677,840	-	SO_1600	0.69	-1.7
1,677,847	-	SO_1600	0.70	-1.3
1,677,904	-	SO_1600	0.72	-1.7
1,677,942	+	SO_1600	0.74	-0.6
1,677,942	+	SO_1600	0.74	-1.0
1,678,228	+	SO_1600	0.86	-1.9
1,678,232	-	SO_1600	0.86	+0.6
1,678,263	-	SO_1600	0.87	-1.3
1,678,388	-			-1.0
1,678,442	+			-1.0
1,678,525	-			-2.5
1,678,549	+			-1.5
1,678,566	+			-3.3
1,678,566	+			-3.2
1,678,792	+			-2.3
1,678,792	+			-2.7
1,678,839	-			-0.1
1,678,871	+			-1.8
1,679,191	-			-1.3
1,679,202	+			-0.0
1,679,202	+			-2.2
1,679,210	-			-1.2
1,679,210	-			-0.8
1,679,210	-			-1.3
1,679,210	-			-2.2
1,679,217	-			-0.9
1,679,230	-			-2.6
1,679,235	-			-0.9
1,679,335	-	SO1602	0.10	-1.6
1,679,370	+	SO1602	0.11	+0.4
1,679,458	+	SO1602	0.12	-2.1
1,679,472	+	SO1602	0.12	-3.6
1,679,612	+	SO1602	0.14	-1.8
1,679,688	-	SO1602	0.15	-2.0
1,679,748	+	SO1602	0.16	-0.0
1,679,768	-	SO1602	0.16	-1.9
1,679,782	-	SO1602	0.16	-2.1
1,679,809	-	SO1602	0.16	+0.3
1,679,882	+	SO1602	0.17	-2.7
1,679,882	+	SO1602	0.17	-1.9
1,679,959	+	SO1602	0.18	-2.0
1,679,968	-	SO1602	0.18	-0.4
1,680,103	+	SO1602	0.20	-1.4
1,680,161	-	SO1602	0.21	-2.7
1,680,165	+	SO1602	0.21	-1.2
1,680,165	+	SO1602	0.21	-1.6
1,680,173	-	SO1602	0.21	-2.8
1,680,173	-	SO1602	0.21	-3.5
1,680,173	-	SO1602	0.21	-3.2
1,680,188	-	SO1602	0.21	-0.9
1,680,189	+	SO1602	0.21	-2.6
1,680,197	-	SO1602	0.21	-2.0
1,680,358	+	SO1602	0.24	-0.3
1,680,366	-	SO1602	0.24	-0.5
1,680,366	-	SO1602	0.24	-2.4
1,680,390	-	SO1602	0.24	-2.1
1,680,392	-	SO1602	0.24	-2.6
1,680,395	+	SO1602	0.24	-2.3
1,680,447	+	SO1602	0.25	+0.1
1,680,455	-	SO1602	0.25	-2.5
1,680,623	+	SO1602	0.27	-1.0
1,680,698	-	SO1602	0.28	-1.4
1,680,717	+	SO1602	0.28	-1.6
1,680,717	+	SO1602	0.28	-0.5
1,680,720	+	SO1602	0.28	-1.2
1,680,860	+	SO1602	0.30	-1.2
1,680,868	-	SO1602	0.30	-1.2
1,680,980	-	SO1602	0.32	-2.1
1,681,035	+	SO1602	0.33	-1.3
1,681,049	+	SO1602	0.33	-2.9
1,681,248	-	SO1602	0.35	+1.0
1,681,304	+	SO1602	0.36	-2.3
1,681,307	+	SO1602	0.36	-0.9
1,681,387	+	SO1602	0.37	-1.1
1,681,395	-	SO1602	0.37	-1.1
1,681,395	-	SO1602	0.37	-0.2
1,681,395	-	SO1602	0.37	-0.8
1,681,395	-	SO1602	0.37	-1.3
1,681,395	-	SO1602	0.37	-1.8
1,681,618	-	SO1602	0.40	-0.7
1,681,634	-	SO1602	0.40	+0.3
1,681,701	-	SO1602	0.41	-0.4
1,682,017	+	SO1602	0.45	+0.1
1,682,136	+	SO1602	0.47	-1.3
1,682,144	-	SO1602	0.47	+0.1
1,682,333	+	SO1602	0.50	-1.1
1,682,502	-	SO1602	0.52	-1.0
1,682,511	-	SO1602	0.52	-2.7
1,682,535	-	SO1602	0.52	+0.0
1,682,575	+	SO1602	0.53	-1.0
1,682,621	+	SO1602	0.53	-1.7
1,682,622	+	SO1602	0.53	-1.1
1,682,641	+	SO1602	0.54	-1.1
1,682,649	-	SO1602	0.54	-0.8
1,682,649	-	SO1602	0.54	-3.7
1,682,715	-	SO1602	0.55	-2.2
1,682,755	+	SO1602	0.55	-2.9
1,682,861	-	SO1602	0.57	-0.5
1,682,871	-	SO1602	0.57	-0.7
1,682,877	+	SO1602	0.57	-1.6
1,682,885	-	SO1602	0.57	-2.2
1,682,899	-	SO1602	0.57	-0.7
1,682,913	-	SO1602	0.57	-1.8
1,682,983	-	SO1602	0.58	-1.4
1,683,048	+	SO1602	0.59	-0.2
1,683,056	-	SO1602	0.59	-0.1
1,683,092	-	SO1602	0.60	-1.5
1,683,338	-	SO1602	0.63	-3.4
1,683,353	-	SO1602	0.63	-0.6
1,683,380	-	SO1602	0.63	-1.3
1,683,417	+	SO1602	0.64	-1.4
1,683,417	+	SO1602	0.64	-1.4
1,683,511	+	SO1602	0.65	-1.3
1,683,619	+	SO1602	0.67	-2.6
1,683,659	+	SO1602	0.67	-2.1
1,683,756	+	SO1602	0.68	-1.5
1,683,860	+	SO1602	0.70	-1.6
1,683,860	+	SO1602	0.70	-2.4
1,683,868	-	SO1602	0.70	-0.7
1,683,868	-	SO1602	0.70	-2.5
1,683,868	-	SO1602	0.70	-0.7
1,683,868	-	SO1602	0.70	-1.8
1,683,962	+	SO1602	0.71	-1.5
1,683,972	+	SO1602	0.71	-0.6
1,683,980	-	SO1602	0.71	-1.6
1,684,042	-	SO1602	0.72	-1.4
1,684,148	+	SO1602	0.74	-1.2
1,684,237	-	SO1602	0.75	-0.2
1,684,373	+	SO1602	0.76	-0.9
1,684,456	+	SO1602	0.78	-1.5
1,684,466	+	SO1602	0.78	-1.5
1,684,474	-	SO1602	0.78	-1.5
1,684,477	+	SO1602	0.78	-0.3
1,684,505	-	SO1602	0.78	-2.0
1,684,535	+	SO1602	0.79	-3.1
1,684,543	-	SO1602	0.79	-1.3
1,684,543	-	SO1602	0.79	-0.2
1,684,576	-	SO1602	0.79	-0.9
1,684,634	+	SO1602	0.80	-1.5
1,684,665	+	SO1602	0.80	-0.8
1,684,762	+	SO1602	0.82	-2.5
1,684,802	+	SO1602	0.82	+0.0
1,684,859	+	SO1602	0.83	-2.0
1,684,908	+	SO1602	0.84	-0.0
1,684,916	-	SO1602	0.84	-2.6
1,684,919	+	SO1602	0.84	-2.9
1,684,927	-	SO1602	0.84	-1.7
1,684,955	+	SO1602	0.84	-1.3
1,685,014	-	SO1602	0.85	-2.6
1,685,091	+	SO1602	0.86	-0.8
1,685,091	+	SO1602	0.86	-2.3
1,685,091	+	SO1602	0.86	-2.8
1,685,099	-	SO1602	0.86	-1.4
1,685,114	-	SO1602	0.86	-1.3
1,685,154	-	SO1602	0.87	-3.0
1,685,312	-	SO1602	0.89	-1.3
1,685,368	+	SO1602	0.90	-0.9
1,685,670	+			-2.4
1,685,717	-			-1.1
1,685,733	+			-2.9
1,685,878	-			-1.0
1,686,024	+			-1.5
1,686,226	-			-0.9
1,686,308	+	SO1603	0.16	-1.1
1,686,338	+	SO1603	0.20	-2.4
1,686,391	+	SO1603	0.26	-1.9
1,686,406	+	SO1603	0.27	-1.2
1,686,418	+	SO1603	0.28	-1.8
1,686,448	-	SO1603	0.32	-1.4
1,686,528	+	SO1603	0.41	-0.9
1,686,528	+	SO1603	0.41	-3.9
1,686,529	-	SO1603	0.41	-0.7
1,686,639	+	SO1603	0.53	-2.4
1,686,647	-	SO1603	0.54	+0.5
1,686,658	+	SO1603	0.55	-1.2
1,686,685	+	SO1603	0.58	-0.9
1,686,685	+	SO1603	0.58	-0.9
1,686,693	-	SO1603	0.59	-1.2
1,686,693	-	SO1603	0.59	-0.2
1,686,693	-	SO1603	0.59	-2.5
1,686,693	-	SO1603	0.59	-1.2
1,686,731	-	SO1603	0.63	-1.5
1,686,761	+	SO1603	0.66	-1.1
1,686,769	-	SO1603	0.67	-1.0
1,686,784	+	SO1603	0.69	-2.0
1,687,028	-			-0.4
1,687,102	-			-1.3

Or see this region's nucleotide sequence