Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0381 and hsdS-1 are separated by 87 nucleotides hsdS-1 and hsdM-1 overlap by 11 nucleotides
SO0381: SO0381 - death-on-curing family protein (NCBI ptt file), at 394,897 to 395,895
SO0381
SO0382: hsdS-1 - type I restriction-modification system, S subunit (NCBI ptt file), at 395,983 to 397,302
hsdS-1
SO0383: hsdM-1 - type I restriction-modification system, M subunit (NCBI ptt file), at 397,292 to 399,049
hsdM-1
Position (kb) 395
396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2 at 394.992 kb on - strand at 394.992 kb on - strand at 395.027 kb on + strand, within SO0381 at 395.029 kb on - strand, within SO0381 at 395.035 kb on - strand, within SO0381 at 395.187 kb on - strand, within SO0381 at 395.193 kb on - strand, within SO0381 at 395.219 kb on - strand, within SO0381 at 395.233 kb on - strand, within SO0381 at 395.331 kb on + strand, within SO0381 at 395.345 kb on - strand, within SO0381 at 395.406 kb on + strand, within SO0381 at 395.459 kb on + strand, within SO0381 at 395.511 kb on + strand, within SO0381 at 395.526 kb on + strand, within SO0381 at 395.526 kb on + strand, within SO0381 at 395.534 kb on - strand, within SO0381 at 395.534 kb on - strand, within SO0381 at 395.647 kb on + strand, within SO0381 at 395.648 kb on - strand, within SO0381 at 395.756 kb on - strand, within SO0381 at 395.756 kb on - strand, within SO0381 at 395.917 kb on + strand at 395.917 kb on + strand at 395.930 kb on - strand at 395.957 kb on + strand at 395.957 kb on + strand at 395.965 kb on - strand at 396.005 kb on + strand at 396.013 kb on - strand at 396.050 kb on + strand at 396.082 kb on - strand at 396.179 kb on - strand, within hsdS-1 at 396.185 kb on + strand, within hsdS-1 at 396.193 kb on - strand, within hsdS-1 at 396.296 kb on + strand, within hsdS-1 at 396.309 kb on - strand, within hsdS-1 at 396.318 kb on + strand, within hsdS-1 at 396.321 kb on - strand, within hsdS-1 at 396.323 kb on + strand, within hsdS-1 at 396.323 kb on + strand, within hsdS-1 at 396.323 kb on + strand, within hsdS-1 at 396.323 kb on + strand, within hsdS-1 at 396.323 kb on + strand, within hsdS-1 at 396.326 kb on - strand, within hsdS-1 at 396.330 kb on + strand, within hsdS-1 at 396.331 kb on - strand, within hsdS-1 at 396.331 kb on - strand, within hsdS-1 at 396.355 kb on + strand, within hsdS-1 at 396.363 kb on - strand, within hsdS-1 at 396.410 kb on + strand, within hsdS-1 at 396.421 kb on - strand, within hsdS-1 at 396.428 kb on + strand, within hsdS-1 at 396.428 kb on + strand, within hsdS-1 at 396.434 kb on + strand, within hsdS-1 at 396.436 kb on - strand, within hsdS-1 at 396.485 kb on + strand, within hsdS-1 at 396.501 kb on + strand, within hsdS-1 at 396.501 kb on + strand, within hsdS-1 at 396.502 kb on - strand, within hsdS-1 at 396.509 kb on - strand, within hsdS-1 at 396.509 kb on - strand, within hsdS-1 at 396.509 kb on - strand, within hsdS-1 at 396.509 kb on - strand, within hsdS-1 at 396.518 kb on - strand, within hsdS-1 at 396.536 kb on + strand, within hsdS-1 at 396.557 kb on + strand, within hsdS-1 at 396.559 kb on + strand, within hsdS-1 at 396.567 kb on + strand, within hsdS-1 at 396.572 kb on - strand, within hsdS-1 at 396.572 kb on - strand, within hsdS-1 at 396.574 kb on + strand, within hsdS-1 at 396.582 kb on - strand, within hsdS-1 at 396.596 kb on - strand, within hsdS-1 at 396.622 kb on - strand, within hsdS-1 at 396.668 kb on + strand, within hsdS-1 at 396.668 kb on + strand, within hsdS-1 at 396.668 kb on + strand, within hsdS-1 at 396.674 kb on + strand, within hsdS-1 at 396.676 kb on - strand, within hsdS-1 at 396.677 kb on + strand, within hsdS-1 at 396.685 kb on - strand, within hsdS-1 at 396.685 kb on - strand, within hsdS-1 at 396.721 kb on - strand, within hsdS-1 at 396.721 kb on - strand, within hsdS-1 at 396.766 kb on + strand, within hsdS-1 at 396.766 kb on + strand, within hsdS-1 at 396.774 kb on - strand, within hsdS-1 at 396.790 kb on - strand, within hsdS-1 at 396.793 kb on + strand, within hsdS-1 at 396.793 kb on + strand, within hsdS-1 at 396.804 kb on + strand, within hsdS-1 at 396.807 kb on - strand, within hsdS-1 at 396.856 kb on + strand, within hsdS-1 at 396.876 kb on + strand, within hsdS-1 at 396.884 kb on - strand, within hsdS-1 at 396.940 kb on + strand, within hsdS-1 at 396.947 kb on + strand, within hsdS-1 at 396.947 kb on + strand, within hsdS-1 at 396.947 kb on + strand, within hsdS-1 at 396.947 kb on + strand, within hsdS-1 at 396.947 kb on + strand, within hsdS-1 at 396.955 kb on - strand, within hsdS-1 at 396.955 kb on - strand, within hsdS-1 at 396.960 kb on - strand, within hsdS-1 at 396.969 kb on + strand, within hsdS-1 at 396.996 kb on + strand, within hsdS-1 at 397.097 kb on + strand, within hsdS-1 at 397.129 kb on + strand, within hsdS-1 at 397.130 kb on + strand, within hsdS-1 at 397.137 kb on - strand, within hsdS-1 at 397.154 kb on - strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.164 kb on + strand, within hsdS-1 at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.172 kb on - strand at 397.184 kb on + strand at 397.184 kb on + strand at 397.192 kb on - strand at 397.201 kb on + strand at 397.295 kb on - strand at 397.304 kb on + strand at 397.306 kb on - strand at 397.307 kb on - strand at 397.319 kb on - strand at 397.320 kb on - strand at 397.320 kb on - strand at 397.325 kb on - strand at 397.336 kb on + strand at 397.349 kb on - strand at 397.349 kb on - strand at 397.374 kb on - strand at 397.378 kb on + strand at 397.378 kb on - strand at 397.387 kb on + strand at 397.408 kb on + strand at 397.416 kb on - strand at 397.458 kb on + strand at 397.463 kb on + strand at 397.463 kb on + strand at 397.464 kb on - strand at 397.471 kb on - strand, within hsdM-1 at 397.478 kb on + strand, within hsdM-1 at 397.488 kb on + strand, within hsdM-1 at 397.488 kb on + strand, within hsdM-1 at 397.488 kb on + strand, within hsdM-1 at 397.506 kb on - strand, within hsdM-1 at 397.534 kb on - strand, within hsdM-1 at 397.568 kb on + strand, within hsdM-1 at 397.580 kb on + strand, within hsdM-1 at 397.580 kb on + strand, within hsdM-1 at 397.585 kb on + strand, within hsdM-1 at 397.586 kb on - strand, within hsdM-1 at 397.588 kb on - strand, within hsdM-1 at 397.601 kb on - strand, within hsdM-1 at 397.603 kb on - strand, within hsdM-1 at 397.608 kb on - strand, within hsdM-1 at 397.617 kb on - strand, within hsdM-1 at 397.733 kb on + strand, within hsdM-1 at 397.793 kb on + strand, within hsdM-1 at 397.819 kb on + strand, within hsdM-1 at 397.829 kb on + strand, within hsdM-1 at 397.829 kb on + strand, within hsdM-1 at 397.829 kb on + strand, within hsdM-1 at 397.888 kb on - strand, within hsdM-1 at 397.989 kb on + strand, within hsdM-1 at 397.989 kb on + strand, within hsdM-1 at 397.994 kb on + strand, within hsdM-1 at 397.994 kb on + strand, within hsdM-1 at 397.994 kb on + strand, within hsdM-1 at 398.012 kb on + strand, within hsdM-1 at 398.096 kb on + strand, within hsdM-1 at 398.096 kb on + strand, within hsdM-1 at 398.101 kb on + strand, within hsdM-1 at 398.104 kb on - strand, within hsdM-1 at 398.106 kb on + strand, within hsdM-1 at 398.149 kb on + strand, within hsdM-1 at 398.157 kb on - strand, within hsdM-1 at 398.157 kb on - strand, within hsdM-1 at 398.194 kb on - strand, within hsdM-1 at 398.195 kb on - strand, within hsdM-1 at 398.231 kb on + strand, within hsdM-1 at 398.289 kb on - strand, within hsdM-1
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 394,992 - +0.1 394,992 - +0.2 395,027 + SO0381 0.13 -0.2 395,029 - SO0381 0.13 +0.5 395,035 - SO0381 0.14 -0.3 395,187 - SO0381 0.29 -0.4 395,193 - SO0381 0.30 +1.6 395,219 - SO0381 0.32 +0.3 395,233 - SO0381 0.34 +0.6 395,331 + SO0381 0.43 -0.6 395,345 - SO0381 0.45 +0.1 395,406 + SO0381 0.51 +0.7 395,459 + SO0381 0.56 -0.2 395,511 + SO0381 0.61 +0.1 395,526 + SO0381 0.63 +2.0 395,526 + SO0381 0.63 -0.4 395,534 - SO0381 0.64 -0.3 395,534 - SO0381 0.64 -0.2 395,647 + SO0381 0.75 -0.0 395,648 - SO0381 0.75 +0.1 395,756 - SO0381 0.86 +0.2 395,756 - SO0381 0.86 -0.2 395,917 + -0.7 395,917 + +0.0 395,930 - +0.4 395,957 + +0.3 395,957 + -0.2 395,965 - -0.9 396,005 + -1.2 396,013 - +1.1 396,050 + +0.4 396,082 - -0.6 396,179 - hsdS-1 SO0382 0.15 -1.1 396,185 + hsdS-1 SO0382 0.15 -1.4 396,193 - hsdS-1 SO0382 0.16 -0.4 396,296 + hsdS-1 SO0382 0.24 -0.2 396,309 - hsdS-1 SO0382 0.25 -1.0 396,318 + hsdS-1 SO0382 0.25 +1.1 396,321 - hsdS-1 SO0382 0.26 +0.7 396,323 + hsdS-1 SO0382 0.26 -1.0 396,323 + hsdS-1 SO0382 0.26 -0.2 396,323 + hsdS-1 SO0382 0.26 -0.7 396,323 + hsdS-1 SO0382 0.26 -0.4 396,323 + hsdS-1 SO0382 0.26 -0.6 396,326 - hsdS-1 SO0382 0.26 -0.7 396,330 + hsdS-1 SO0382 0.26 -0.4 396,331 - hsdS-1 SO0382 0.26 +0.4 396,331 - hsdS-1 SO0382 0.26 +0.6 396,355 + hsdS-1 SO0382 0.28 -0.6 396,363 - hsdS-1 SO0382 0.29 -0.4 396,410 + hsdS-1 SO0382 0.32 -1.9 396,421 - hsdS-1 SO0382 0.33 -0.3 396,428 + hsdS-1 SO0382 0.34 +0.2 396,428 + hsdS-1 SO0382 0.34 -0.8 396,434 + hsdS-1 SO0382 0.34 -0.0 396,436 - hsdS-1 SO0382 0.34 -0.9 396,485 + hsdS-1 SO0382 0.38 +0.8 396,501 + hsdS-1 SO0382 0.39 -0.4 396,501 + hsdS-1 SO0382 0.39 +1.0 396,502 - hsdS-1 SO0382 0.39 +1.3 396,509 - hsdS-1 SO0382 0.40 -0.1 396,509 - hsdS-1 SO0382 0.40 -0.2 396,509 - hsdS-1 SO0382 0.40 -1.5 396,509 - hsdS-1 SO0382 0.40 +0.3 396,518 - hsdS-1 SO0382 0.41 +0.6 396,536 + hsdS-1 SO0382 0.42 -0.6 396,557 + hsdS-1 SO0382 0.43 -0.4 396,559 + hsdS-1 SO0382 0.44 -0.5 396,567 + hsdS-1 SO0382 0.44 +1.0 396,572 - hsdS-1 SO0382 0.45 -0.1 396,572 - hsdS-1 SO0382 0.45 -0.4 396,574 + hsdS-1 SO0382 0.45 -0.2 396,582 - hsdS-1 SO0382 0.45 +1.4 396,596 - hsdS-1 SO0382 0.46 -0.0 396,622 - hsdS-1 SO0382 0.48 +0.2 396,668 + hsdS-1 SO0382 0.52 -0.7 396,668 + hsdS-1 SO0382 0.52 +0.2 396,668 + hsdS-1 SO0382 0.52 -0.2 396,674 + hsdS-1 SO0382 0.52 -0.6 396,676 - hsdS-1 SO0382 0.53 +0.5 396,677 + hsdS-1 SO0382 0.53 +0.2 396,685 - hsdS-1 SO0382 0.53 +0.4 396,685 - hsdS-1 SO0382 0.53 +0.9 396,721 - hsdS-1 SO0382 0.56 -0.0 396,721 - hsdS-1 SO0382 0.56 -0.5 396,766 + hsdS-1 SO0382 0.59 -0.5 396,766 + hsdS-1 SO0382 0.59 -0.5 396,774 - hsdS-1 SO0382 0.60 +0.7 396,790 - hsdS-1 SO0382 0.61 -0.4 396,793 + hsdS-1 SO0382 0.61 -0.6 396,793 + hsdS-1 SO0382 0.61 +0.6 396,804 + hsdS-1 SO0382 0.62 +0.4 396,807 - hsdS-1 SO0382 0.62 +0.8 396,856 + hsdS-1 SO0382 0.66 -0.2 396,876 + hsdS-1 SO0382 0.68 -0.7 396,884 - hsdS-1 SO0382 0.68 +0.5 396,940 + hsdS-1 SO0382 0.72 +0.3 396,947 + hsdS-1 SO0382 0.73 -0.7 396,947 + hsdS-1 SO0382 0.73 +0.5 396,947 + hsdS-1 SO0382 0.73 -0.1 396,947 + hsdS-1 SO0382 0.73 -0.3 396,947 + hsdS-1 SO0382 0.73 -1.4 396,955 - hsdS-1 SO0382 0.74 -0.9 396,955 - hsdS-1 SO0382 0.74 -0.9 396,960 - hsdS-1 SO0382 0.74 -0.2 396,969 + hsdS-1 SO0382 0.75 -1.3 396,996 + hsdS-1 SO0382 0.77 -0.3 397,097 + hsdS-1 SO0382 0.84 -0.6 397,129 + hsdS-1 SO0382 0.87 -0.2 397,130 + hsdS-1 SO0382 0.87 -0.6 397,137 - hsdS-1 SO0382 0.87 -0.0 397,154 - hsdS-1 SO0382 0.89 +0.3 397,164 + hsdS-1 SO0382 0.89 +0.1 397,164 + hsdS-1 SO0382 0.89 -0.2 397,164 + hsdS-1 SO0382 0.89 +0.5 397,164 + hsdS-1 SO0382 0.89 -0.2 397,164 + hsdS-1 SO0382 0.89 -0.4 397,164 + hsdS-1 SO0382 0.89 +0.6 397,164 + hsdS-1 SO0382 0.89 +0.1 397,164 + hsdS-1 SO0382 0.89 +0.6 397,164 + hsdS-1 SO0382 0.89 +0.1 397,164 + hsdS-1 SO0382 0.89 +1.0 397,164 + hsdS-1 SO0382 0.89 -0.5 397,164 + hsdS-1 SO0382 0.89 -1.3 397,164 + hsdS-1 SO0382 0.89 +1.0 397,164 + hsdS-1 SO0382 0.89 -0.5 397,164 + hsdS-1 SO0382 0.89 -0.2 397,164 + hsdS-1 SO0382 0.89 -0.3 397,164 + hsdS-1 SO0382 0.89 +0.2 397,164 + hsdS-1 SO0382 0.89 -0.2 397,164 + hsdS-1 SO0382 0.89 +0.1 397,164 + hsdS-1 SO0382 0.89 +0.6 397,164 + hsdS-1 SO0382 0.89 -0.7 397,164 + hsdS-1 SO0382 0.89 -0.2 397,164 + hsdS-1 SO0382 0.89 -0.2 397,164 + hsdS-1 SO0382 0.89 -0.9 397,164 + hsdS-1 SO0382 0.89 +0.1 397,164 + hsdS-1 SO0382 0.89 -0.2 397,164 + hsdS-1 SO0382 0.89 -0.7 397,164 + hsdS-1 SO0382 0.89 -0.7 397,164 + hsdS-1 SO0382 0.89 +0.2 397,164 + hsdS-1 SO0382 0.89 -0.1 397,164 + hsdS-1 SO0382 0.89 -1.3 397,172 - -0.4 397,172 - +0.7 397,172 - -1.4 397,172 - -0.9 397,172 - -0.5 397,172 - -0.1 397,172 - +0.2 397,172 - +0.2 397,172 - -0.1 397,172 - +0.3 397,172 - -0.0 397,172 - -0.8 397,172 - -0.7 397,172 - -0.0 397,172 - -0.0 397,172 - -1.0 397,172 - -0.7 397,172 - -0.2 397,172 - -0.5 397,172 - -1.7 397,172 - -0.4 397,172 - -0.5 397,172 - +0.1 397,172 - -0.3 397,172 - -1.5 397,172 - -0.7 397,172 - -1.2 397,184 + -0.5 397,184 + -0.3 397,192 - +1.3 397,201 + +0.1 397,295 - +0.5 397,304 + +0.9 397,306 - -0.7 397,307 - +2.0 397,319 - +0.3 397,320 - +0.8 397,320 - -1.0 397,325 - -1.1 397,336 + -0.2 397,349 - -0.2 397,349 - -1.0 397,374 - +0.4 397,378 + -0.4 397,378 - -0.8 397,387 + +0.1 397,408 + -0.4 397,416 - +0.8 397,458 + +0.2 397,463 + -0.6 397,463 + -1.0 397,464 - -1.7 397,471 - hsdM-1 SO0383 0.10 -0.4 397,478 + hsdM-1 SO0383 0.11 +1.0 397,488 + hsdM-1 SO0383 0.11 +0.1 397,488 + hsdM-1 SO0383 0.11 -0.2 397,488 + hsdM-1 SO0383 0.11 -0.0 397,506 - hsdM-1 SO0383 0.12 +0.3 397,534 - hsdM-1 SO0383 0.14 -0.0 397,568 + hsdM-1 SO0383 0.16 +0.1 397,580 + hsdM-1 SO0383 0.16 -0.9 397,580 + hsdM-1 SO0383 0.16 -1.2 397,585 + hsdM-1 SO0383 0.17 +0.2 397,586 - hsdM-1 SO0383 0.17 +0.3 397,588 - hsdM-1 SO0383 0.17 -0.1 397,601 - hsdM-1 SO0383 0.18 +0.4 397,603 - hsdM-1 SO0383 0.18 -0.7 397,608 - hsdM-1 SO0383 0.18 +0.1 397,617 - hsdM-1 SO0383 0.18 -0.7 397,733 + hsdM-1 SO0383 0.25 +0.7 397,793 + hsdM-1 SO0383 0.28 -0.8 397,819 + hsdM-1 SO0383 0.30 -0.2 397,829 + hsdM-1 SO0383 0.31 +0.2 397,829 + hsdM-1 SO0383 0.31 -0.2 397,829 + hsdM-1 SO0383 0.31 -0.1 397,888 - hsdM-1 SO0383 0.34 +2.0 397,989 + hsdM-1 SO0383 0.40 +0.2 397,989 + hsdM-1 SO0383 0.40 +0.0 397,994 + hsdM-1 SO0383 0.40 -1.1 397,994 + hsdM-1 SO0383 0.40 -0.1 397,994 + hsdM-1 SO0383 0.40 +0.0 398,012 + hsdM-1 SO0383 0.41 -0.1 398,096 + hsdM-1 SO0383 0.46 +1.0 398,096 + hsdM-1 SO0383 0.46 -0.5 398,101 + hsdM-1 SO0383 0.46 +0.3 398,104 - hsdM-1 SO0383 0.46 +0.4 398,106 + hsdM-1 SO0383 0.46 +0.3 398,149 + hsdM-1 SO0383 0.49 -0.3 398,157 - hsdM-1 SO0383 0.49 -1.0 398,157 - hsdM-1 SO0383 0.49 -1.0 398,194 - hsdM-1 SO0383 0.51 -0.4 398,195 - hsdM-1 SO0383 0.51 -0.5 398,231 + hsdM-1 SO0383 0.53 -0.3 398,289 - hsdM-1 SO0383 0.57 -1.0
Or see this region's nucleotide sequence