Strain Fitness in Shewanella oneidensis MR-1 around SO0380
Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | L-Glutamic (N) |
---|---|---|---|---|---|
remove | |||||
390,869 | + | -2.1 | |||
390,876 | - | -1.1 | |||
390,876 | - | -2.5 | |||
390,925 | - | SO0379 | 0.16 | -0.9 | |
390,951 | - | SO0379 | 0.20 | -1.2 | |
391,084 | - | SO0379 | 0.38 | +0.1 | |
391,089 | - | SO0379 | 0.39 | -1.2 | |
391,095 | - | SO0379 | 0.40 | -0.8 | |
391,124 | + | SO0379 | 0.44 | -2.9 | |
391,124 | + | SO0379 | 0.44 | +0.2 | |
391,134 | + | SO0379 | 0.45 | -2.4 | |
391,142 | - | SO0379 | 0.46 | -1.1 | |
391,167 | + | SO0379 | 0.50 | -1.1 | |
391,175 | - | SO0379 | 0.51 | -1.7 | |
391,219 | - | SO0379 | 0.57 | -0.8 | |
391,228 | - | SO0379 | 0.59 | -2.4 | |
391,235 | + | SO0379 | 0.60 | -1.9 | |
391,265 | + | SO0379 | 0.64 | -0.6 | |
391,323 | + | SO0379 | 0.72 | -3.9 | |
391,409 | - | SO0379 | 0.84 | -2.8 | |
391,447 | + | SO0379 | 0.89 | -0.7 | |
391,447 | + | SO0379 | 0.89 | -3.3 | |
391,486 | + | +0.2 | |||
391,486 | + | -0.3 | |||
391,486 | + | -0.3 | |||
391,486 | + | -1.2 | |||
391,494 | - | -1.0 | |||
391,494 | - | -1.0 | |||
391,494 | - | +0.5 | |||
391,494 | - | -0.6 | |||
391,517 | + | -0.6 | |||
391,571 | - | +0.2 | |||
391,576 | + | +1.3 | |||
391,581 | + | +1.0 | |||
391,584 | - | -1.7 | |||
391,682 | + | -0.8 | |||
391,690 | - | -0.2 | |||
391,711 | + | +0.5 | |||
391,712 | + | -1.1 | |||
391,712 | + | +1.6 | |||
391,791 | - | -0.4 | |||
391,791 | - | -1.1 | |||
391,853 | - | hsdR-1 | SO0380 | 0.11 | +0.7 |
391,883 | - | hsdR-1 | SO0380 | 0.12 | +1.0 |
391,889 | - | hsdR-1 | SO0380 | 0.12 | -0.1 |
391,907 | + | hsdR-1 | SO0380 | 0.12 | -1.4 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | -0.4 |
391,942 | + | +0.0 | |||
391,942 | + | hsdR-1 | SO0380 | 0.13 | +1.4 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | -0.7 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | -0.4 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | -0.0 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | +1.1 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | -0.4 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | +0.1 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | -1.0 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | -0.3 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | -1.4 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | -0.1 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | +0.7 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | -0.1 |
391,942 | + | hsdR-1 | SO0380 | 0.13 | +0.1 |
391,944 | - | hsdR-1 | SO0380 | 0.13 | +0.7 |
391,950 | - | hsdR-1 | SO0380 | 0.14 | +0.1 |
391,950 | - | hsdR-1 | SO0380 | 0.14 | -0.6 |
391,950 | - | hsdR-1 | SO0380 | 0.14 | +0.2 |
391,950 | - | hsdR-1 | SO0380 | 0.14 | -0.7 |
391,950 | - | hsdR-1 | SO0380 | 0.14 | -0.2 |
391,950 | - | hsdR-1 | SO0380 | 0.14 | +1.3 |
391,950 | - | hsdR-1 | SO0380 | 0.14 | +0.2 |
391,950 | - | hsdR-1 | SO0380 | 0.14 | +0.6 |
391,950 | - | hsdR-1 | SO0380 | 0.14 | -0.5 |
391,950 | - | hsdR-1 | SO0380 | 0.14 | -0.6 |
391,975 | - | hsdR-1 | SO0380 | 0.14 | -0.2 |
392,000 | - | hsdR-1 | SO0380 | 0.15 | -0.8 |
392,010 | - | hsdR-1 | SO0380 | 0.16 | -0.6 |
392,028 | + | hsdR-1 | SO0380 | 0.16 | -0.9 |
392,121 | - | hsdR-1 | SO0380 | 0.19 | +0.2 |
392,152 | + | hsdR-1 | SO0380 | 0.20 | -0.0 |
392,160 | - | hsdR-1 | SO0380 | 0.20 | +0.3 |
392,160 | - | hsdR-1 | SO0380 | 0.20 | +0.1 |
392,174 | + | hsdR-1 | SO0380 | 0.21 | +0.3 |
392,174 | + | hsdR-1 | SO0380 | 0.21 | -0.2 |
392,181 | - | hsdR-1 | SO0380 | 0.21 | +0.3 |
392,208 | + | hsdR-1 | SO0380 | 0.22 | +0.7 |
392,210 | + | hsdR-1 | SO0380 | 0.22 | -0.1 |
392,216 | - | hsdR-1 | SO0380 | 0.22 | -0.4 |
392,218 | - | hsdR-1 | SO0380 | 0.22 | +0.3 |
392,248 | - | hsdR-1 | SO0380 | 0.23 | +1.3 |
392,267 | + | hsdR-1 | SO0380 | 0.24 | +1.3 |
392,320 | + | hsdR-1 | SO0380 | 0.26 | +1.3 |
392,320 | + | hsdR-1 | SO0380 | 0.26 | +0.4 |
392,358 | - | hsdR-1 | SO0380 | 0.27 | -0.5 |
392,367 | + | hsdR-1 | SO0380 | 0.27 | -0.2 |
392,437 | + | hsdR-1 | SO0380 | 0.29 | -0.5 |
392,520 | - | hsdR-1 | SO0380 | 0.32 | +0.0 |
392,520 | - | hsdR-1 | SO0380 | 0.32 | -1.1 |
392,561 | + | hsdR-1 | SO0380 | 0.33 | -0.0 |
392,571 | + | hsdR-1 | SO0380 | 0.34 | +0.4 |
392,594 | + | hsdR-1 | SO0380 | 0.34 | -0.4 |
392,594 | + | hsdR-1 | SO0380 | 0.34 | +0.1 |
392,618 | + | hsdR-1 | SO0380 | 0.35 | -0.3 |
392,639 | + | hsdR-1 | SO0380 | 0.36 | -0.2 |
392,647 | - | hsdR-1 | SO0380 | 0.36 | -1.1 |
392,709 | - | hsdR-1 | SO0380 | 0.38 | +0.4 |
392,711 | + | hsdR-1 | SO0380 | 0.38 | +0.5 |
392,711 | + | hsdR-1 | SO0380 | 0.38 | -0.7 |
392,711 | + | hsdR-1 | SO0380 | 0.38 | -0.1 |
392,719 | - | hsdR-1 | SO0380 | 0.38 | +0.7 |
392,763 | - | hsdR-1 | SO0380 | 0.40 | -0.1 |
392,771 | - | hsdR-1 | SO0380 | 0.40 | +0.0 |
392,911 | + | hsdR-1 | SO0380 | 0.45 | +0.0 |
392,950 | - | hsdR-1 | SO0380 | 0.46 | -0.9 |
393,024 | + | hsdR-1 | SO0380 | 0.48 | -0.6 |
393,030 | + | hsdR-1 | SO0380 | 0.48 | -0.4 |
393,056 | - | hsdR-1 | SO0380 | 0.49 | +0.6 |
393,103 | + | hsdR-1 | SO0380 | 0.51 | +0.7 |
393,227 | - | hsdR-1 | SO0380 | 0.55 | +0.2 |
393,227 | - | hsdR-1 | SO0380 | 0.55 | -0.0 |
393,227 | - | hsdR-1 | SO0380 | 0.55 | -2.6 |
393,232 | - | hsdR-1 | SO0380 | 0.55 | +0.6 |
393,242 | - | hsdR-1 | SO0380 | 0.55 | +0.1 |
393,255 | - | hsdR-1 | SO0380 | 0.56 | -0.2 |
393,355 | - | hsdR-1 | SO0380 | 0.59 | +0.3 |
393,423 | + | hsdR-1 | SO0380 | 0.61 | -0.2 |
393,431 | - | hsdR-1 | SO0380 | 0.61 | -0.4 |
393,431 | - | hsdR-1 | SO0380 | 0.61 | +0.9 |
393,431 | - | hsdR-1 | SO0380 | 0.61 | +0.4 |
393,431 | - | hsdR-1 | SO0380 | 0.61 | -0.2 |
393,431 | - | hsdR-1 | SO0380 | 0.61 | -0.2 |
393,464 | + | hsdR-1 | SO0380 | 0.62 | -0.5 |
393,464 | + | hsdR-1 | SO0380 | 0.62 | +0.3 |
393,464 | + | hsdR-1 | SO0380 | 0.62 | +0.2 |
393,472 | - | hsdR-1 | SO0380 | 0.63 | -0.2 |
393,472 | - | hsdR-1 | SO0380 | 0.63 | -0.3 |
393,472 | - | hsdR-1 | SO0380 | 0.63 | -0.4 |
393,472 | - | hsdR-1 | SO0380 | 0.63 | +1.3 |
393,472 | - | hsdR-1 | SO0380 | 0.63 | -0.7 |
393,474 | + | hsdR-1 | SO0380 | 0.63 | -1.0 |
393,482 | + | hsdR-1 | SO0380 | 0.63 | +0.4 |
393,483 | + | hsdR-1 | SO0380 | 0.63 | -0.5 |
393,483 | + | hsdR-1 | SO0380 | 0.63 | -2.1 |
393,483 | + | hsdR-1 | SO0380 | 0.63 | -0.2 |
393,488 | + | hsdR-1 | SO0380 | 0.63 | +0.5 |
393,491 | - | hsdR-1 | SO0380 | 0.63 | -0.2 |
393,491 | - | hsdR-1 | SO0380 | 0.63 | -0.2 |
393,605 | + | hsdR-1 | SO0380 | 0.67 | +0.4 |
393,610 | + | hsdR-1 | SO0380 | 0.67 | +0.7 |
393,613 | - | hsdR-1 | SO0380 | 0.67 | +0.3 |
393,613 | - | hsdR-1 | SO0380 | 0.67 | -0.2 |
393,613 | - | hsdR-1 | SO0380 | 0.67 | -0.7 |
393,644 | + | hsdR-1 | SO0380 | 0.68 | -0.9 |
393,654 | + | hsdR-1 | SO0380 | 0.69 | +0.1 |
393,654 | + | hsdR-1 | SO0380 | 0.69 | -0.3 |
393,654 | + | hsdR-1 | SO0380 | 0.69 | -0.6 |
393,654 | + | hsdR-1 | SO0380 | 0.69 | +0.5 |
393,654 | + | hsdR-1 | SO0380 | 0.69 | +1.1 |
393,654 | + | hsdR-1 | SO0380 | 0.69 | +1.7 |
393,662 | - | hsdR-1 | SO0380 | 0.69 | +0.2 |
393,662 | - | hsdR-1 | SO0380 | 0.69 | +0.3 |
393,662 | - | hsdR-1 | SO0380 | 0.69 | -0.6 |
393,692 | - | hsdR-1 | SO0380 | 0.70 | +1.0 |
393,710 | - | hsdR-1 | SO0380 | 0.70 | +0.1 |
393,725 | + | hsdR-1 | SO0380 | 0.71 | +1.6 |
393,788 | - | hsdR-1 | SO0380 | 0.73 | -0.4 |
393,788 | - | hsdR-1 | SO0380 | 0.73 | +0.2 |
393,788 | - | hsdR-1 | SO0380 | 0.73 | +0.4 |
393,806 | + | hsdR-1 | SO0380 | 0.74 | -0.2 |
393,816 | - | hsdR-1 | SO0380 | 0.74 | -0.3 |
393,852 | + | hsdR-1 | SO0380 | 0.75 | -0.2 |
393,852 | + | hsdR-1 | SO0380 | 0.75 | -0.3 |
393,857 | + | hsdR-1 | SO0380 | 0.75 | +0.8 |
393,860 | - | hsdR-1 | SO0380 | 0.75 | +0.8 |
393,862 | + | hsdR-1 | SO0380 | 0.75 | -0.6 |
393,862 | + | hsdR-1 | SO0380 | 0.75 | +0.5 |
393,862 | + | hsdR-1 | SO0380 | 0.75 | -1.0 |
393,862 | + | hsdR-1 | SO0380 | 0.75 | +0.1 |
393,870 | - | hsdR-1 | SO0380 | 0.76 | -0.1 |
393,870 | - | hsdR-1 | SO0380 | 0.76 | +0.2 |
393,870 | - | hsdR-1 | SO0380 | 0.76 | +0.8 |
393,870 | - | hsdR-1 | SO0380 | 0.76 | +0.4 |
393,870 | - | hsdR-1 | SO0380 | 0.76 | +0.0 |
393,873 | + | hsdR-1 | SO0380 | 0.76 | +0.1 |
393,873 | + | hsdR-1 | SO0380 | 0.76 | -0.2 |
393,873 | + | hsdR-1 | SO0380 | 0.76 | -0.3 |
393,881 | - | hsdR-1 | SO0380 | 0.76 | +0.4 |
393,937 | + | hsdR-1 | SO0380 | 0.78 | +0.2 |
393,953 | + | hsdR-1 | SO0380 | 0.78 | -0.4 |
393,973 | - | hsdR-1 | SO0380 | 0.79 | +0.2 |
393,975 | + | hsdR-1 | SO0380 | 0.79 | -1.6 |
393,975 | + | hsdR-1 | SO0380 | 0.79 | +1.1 |
393,978 | - | hsdR-1 | SO0380 | 0.79 | +0.6 |
393,983 | - | hsdR-1 | SO0380 | 0.79 | -2.0 |
393,983 | - | hsdR-1 | SO0380 | 0.79 | -0.3 |
394,016 | - | hsdR-1 | SO0380 | 0.80 | +0.5 |
394,036 | - | hsdR-1 | SO0380 | 0.81 | -1.9 |
394,037 | - | hsdR-1 | SO0380 | 0.81 | +0.0 |
394,125 | - | hsdR-1 | SO0380 | 0.84 | +0.2 |
394,167 | + | hsdR-1 | SO0380 | 0.85 | -0.2 |
394,236 | + | hsdR-1 | SO0380 | 0.87 | -0.4 |
394,236 | + | hsdR-1 | SO0380 | 0.87 | +0.7 |
394,254 | - | hsdR-1 | SO0380 | 0.88 | -0.7 |
394,262 | + | hsdR-1 | SO0380 | 0.88 | -0.2 |
394,264 | - | hsdR-1 | SO0380 | 0.88 | +0.9 |
394,264 | - | hsdR-1 | SO0380 | 0.88 | -0.4 |
394,269 | + | hsdR-1 | SO0380 | 0.88 | +1.3 |
394,277 | - | hsdR-1 | SO0380 | 0.89 | +0.6 |
394,277 | - | hsdR-1 | SO0380 | 0.89 | -0.1 |
394,294 | + | hsdR-1 | SO0380 | 0.89 | -0.6 |
394,294 | + | hsdR-1 | SO0380 | 0.89 | +0.0 |
394,302 | - | hsdR-1 | SO0380 | 0.89 | -0.7 |
394,302 | - | hsdR-1 | SO0380 | 0.89 | -1.5 |
394,302 | - | hsdR-1 | SO0380 | 0.89 | +0.7 |
394,309 | - | hsdR-1 | SO0380 | 0.90 | -0.1 |
394,316 | + | hsdR-1 | SO0380 | 0.90 | +0.2 |
394,316 | + | hsdR-1 | SO0380 | 0.90 | -0.1 |
394,338 | + | -0.0 | |||
394,358 | + | +0.1 | |||
394,366 | - | -0.3 | |||
394,366 | - | -0.4 | |||
394,383 | - | +1.1 | |||
394,425 | + | +0.9 | |||
394,427 | - | -0.6 | |||
394,435 | + | -1.9 | |||
394,457 | - | -0.5 | |||
394,476 | + | -0.0 | |||
394,484 | - | -0.4 | |||
394,501 | - | +1.0 | |||
394,523 | - | +0.4 | |||
394,526 | + | -1.2 | |||
394,534 | - | -0.2 | |||
394,536 | - | +0.7 | |||
394,596 | + | -0.3 | |||
394,602 | + | +0.5 | |||
394,602 | + | +1.2 | |||
394,602 | + | +0.5 | |||
394,610 | - | +0.2 | |||
394,636 | - | +0.8 | |||
394,636 | - | -0.2 | |||
394,926 | + | -0.7 | |||
394,992 | - | +0.1 | |||
394,992 | - | +0.2 | |||
395,027 | + | SO0381 | 0.13 | -0.2 | |
395,029 | - | SO0381 | 0.13 | +0.5 | |
395,035 | - | SO0381 | 0.14 | -0.3 | |
395,187 | - | SO0381 | 0.29 | -0.4 | |
395,193 | - | SO0381 | 0.30 | +1.6 | |
395,219 | - | SO0381 | 0.32 | +0.3 | |
395,233 | - | SO0381 | 0.34 | +0.6 | |
395,331 | + | SO0381 | 0.43 | -0.6 | |
395,345 | - | SO0381 | 0.45 | +0.1 | |
395,406 | + | SO0381 | 0.51 | +0.7 | |
395,459 | + | SO0381 | 0.56 | -0.2 | |
395,511 | + | SO0381 | 0.61 | +0.1 | |
395,526 | + | SO0381 | 0.63 | +2.0 | |
395,526 | + | SO0381 | 0.63 | -0.4 | |
395,534 | - | SO0381 | 0.64 | -0.3 | |
395,534 | - | SO0381 | 0.64 | -0.2 |
Or see this region's nucleotide sequence