Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0285 and aroK are separated by 219 nucleotides aroK and aroB are separated by 5 nucleotides aroB and SO0288 are separated by 18 nucleotides
SO0285: SO0285 - type IV pilus biogenesis protein PilQ (NCBI ptt file), at 291,567 to 293,621
SO0285
SO0286: aroK - shikimate kinase (NCBI ptt file), at 293,841 to 294,356
aroK
SO0287: aroB - 3-dehydroquinate synthase (NCBI ptt file), at 294,362 to 295,441
aroB
SO0288: SO0288 - damX domain protein (NCBI ptt file), at 295,460 to 296,872
SO0288
Position (kb) 294
295
296 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 293.368 kb on - strand, within SO0285 at 293.368 kb on - strand, within SO0285 at 293.457 kb on - strand at 293.555 kb on + strand at 293.582 kb on - strand at 293.616 kb on + strand at 293.616 kb on + strand at 293.624 kb on - strand at 293.624 kb on - strand at 293.624 kb on - strand at 293.750 kb on + strand at 293.755 kb on + strand at 294.416 kb on + strand at 294.495 kb on - strand, within aroB at 294.518 kb on - strand, within aroB at 294.520 kb on + strand, within aroB at 294.922 kb on - strand, within aroB at 294.926 kb on + strand, within aroB at 295.001 kb on + strand, within aroB at 295.003 kb on - strand, within aroB at 295.003 kb on - strand, within aroB at 295.067 kb on + strand, within aroB at 295.085 kb on + strand, within aroB at 295.176 kb on - strand, within aroB at 295.178 kb on + strand, within aroB at 295.334 kb on + strand at 295.334 kb on + strand at 295.432 kb on - strand at 295.437 kb on + strand at 295.478 kb on + strand at 295.561 kb on + strand at 295.578 kb on + strand at 295.578 kb on + strand at 295.595 kb on + strand at 295.856 kb on + strand, within SO0288 at 295.856 kb on + strand, within SO0288 at 295.856 kb on + strand, within SO0288 at 295.864 kb on - strand, within SO0288 at 295.876 kb on - strand, within SO0288 at 295.913 kb on - strand, within SO0288 at 295.956 kb on + strand, within SO0288 at 295.993 kb on + strand, within SO0288 at 296.071 kb on + strand, within SO0288 at 296.090 kb on + strand, within SO0288 at 296.098 kb on - strand, within SO0288 at 296.105 kb on - strand, within SO0288 at 296.126 kb on + strand, within SO0288 at 296.152 kb on + strand, within SO0288 at 296.152 kb on + strand, within SO0288 at 296.249 kb on + strand, within SO0288 at 296.408 kb on + strand, within SO0288
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 293,368 - SO0285 0.88 +0.0 293,368 - SO0285 0.88 +0.2 293,457 - +0.5 293,555 + +0.1 293,582 - -0.8 293,616 + -0.7 293,616 + -0.5 293,624 - -0.3 293,624 - +0.3 293,624 - -0.4 293,750 + -1.0 293,755 + -1.9 294,416 + -1.3 294,495 - aroB SO0287 0.12 -2.1 294,518 - aroB SO0287 0.14 -3.4 294,520 + aroB SO0287 0.15 -2.8 294,922 - aroB SO0287 0.52 -4.7 294,926 + aroB SO0287 0.52 -4.0 295,001 + aroB SO0287 0.59 -3.9 295,003 - aroB SO0287 0.59 -4.1 295,003 - aroB SO0287 0.59 -3.4 295,067 + aroB SO0287 0.65 -3.2 295,085 + aroB SO0287 0.67 -2.2 295,176 - aroB SO0287 0.75 -2.3 295,178 + aroB SO0287 0.76 -2.9 295,334 + -2.5 295,334 + -0.9 295,432 - +0.1 295,437 + +0.7 295,478 + +0.3 295,561 + +0.5 295,578 + -0.0 295,578 + +0.5 295,595 + -0.1 295,856 + SO0288 0.28 -0.2 295,856 + SO0288 0.28 +0.1 295,856 + SO0288 0.28 +0.5 295,864 - SO0288 0.29 +0.7 295,876 - SO0288 0.29 -0.2 295,913 - SO0288 0.32 -1.1 295,956 + SO0288 0.35 -0.1 295,993 + SO0288 0.38 +0.5 296,071 + SO0288 0.43 -0.7 296,090 + SO0288 0.45 -0.6 296,098 - SO0288 0.45 +0.1 296,105 - SO0288 0.46 -0.8 296,126 + SO0288 0.47 +1.7 296,152 + SO0288 0.49 -0.8 296,152 + SO0288 0.49 +0.7 296,249 + SO0288 0.56 +0.1 296,408 + SO0288 0.67 +0.2
Or see this region's nucleotide sequence