Experiment: L-Aspartic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ahpF and ahpC are separated by 234 nucleotides ahpC and pepA-1 are separated by 341 nucleotides
SO0956: ahpF - alkyl hydroperoxide reductase, F subunit (NCBI ptt file), at 991,215 to 992,798
ahpF
SO0958: ahpC - alkyl hydroperoxide reductase, C subunit (NCBI ptt file), at 993,033 to 993,602
ahpC
SO0959: pepA-1 - cytosol aminopeptidase (NCBI ptt file), at 993,944 to 995,479
pepA-1
Position (kb) 993
994 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 992.102 kb on - strand, within ahpF at 992.289 kb on + strand, within ahpF at 992.382 kb on + strand, within ahpF at 992.424 kb on + strand, within ahpF at 992.507 kb on + strand, within ahpF at 992.507 kb on - strand, within ahpF at 992.534 kb on - strand, within ahpF at 992.554 kb on + strand, within ahpF at 992.591 kb on + strand, within ahpF at 992.596 kb on + strand, within ahpF at 992.596 kb on + strand, within ahpF at 992.596 kb on + strand, within ahpF at 992.604 kb on - strand, within ahpF at 992.604 kb on - strand, within ahpF at 992.663 kb on + strand at 992.673 kb on + strand at 992.812 kb on - strand at 992.854 kb on + strand at 992.999 kb on + strand at 993.050 kb on + strand at 993.050 kb on + strand at 993.058 kb on - strand at 993.062 kb on + strand at 993.087 kb on + strand at 993.134 kb on - strand, within ahpC at 993.136 kb on + strand, within ahpC at 993.171 kb on + strand, within ahpC at 993.230 kb on - strand, within ahpC at 993.242 kb on + strand, within ahpC at 993.242 kb on + strand, within ahpC at 993.250 kb on - strand, within ahpC at 993.250 kb on - strand, within ahpC at 993.257 kb on - strand, within ahpC at 993.356 kb on - strand, within ahpC at 993.395 kb on + strand, within ahpC at 993.441 kb on + strand, within ahpC at 993.549 kb on - strand at 993.590 kb on - strand at 993.682 kb on - strand at 993.684 kb on - strand at 993.784 kb on + strand at 993.921 kb on - strand at 993.970 kb on + strand at 994.068 kb on + strand at 994.076 kb on - strand at 994.076 kb on - strand at 994.130 kb on + strand, within pepA-1 at 994.234 kb on + strand, within pepA-1 at 994.298 kb on - strand, within pepA-1 at 994.391 kb on + strand, within pepA-1 at 994.431 kb on - strand, within pepA-1 at 994.559 kb on + strand, within pepA-1 at 994.567 kb on - strand, within pepA-1 at 994.590 kb on + strand, within pepA-1
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (N) remove 992,102 - ahpF SO0956 0.56 +0.1 992,289 + ahpF SO0956 0.68 +0.7 992,382 + ahpF SO0956 0.74 -0.1 992,424 + ahpF SO0956 0.76 +0.0 992,507 + ahpF SO0956 0.82 +0.4 992,507 - ahpF SO0956 0.82 +0.4 992,534 - ahpF SO0956 0.83 -0.2 992,554 + ahpF SO0956 0.85 -0.4 992,591 + ahpF SO0956 0.87 -0.2 992,596 + ahpF SO0956 0.87 -1.4 992,596 + ahpF SO0956 0.87 +0.0 992,596 + ahpF SO0956 0.87 -0.1 992,604 - ahpF SO0956 0.88 -0.5 992,604 - ahpF SO0956 0.88 -3.0 992,663 + +0.5 992,673 + +0.6 992,812 - +0.4 992,854 + +0.2 992,999 + +0.1 993,050 + -0.6 993,050 + -0.0 993,058 - -0.5 993,062 + +0.3 993,087 + -1.0 993,134 - ahpC SO0958 0.18 +0.2 993,136 + ahpC SO0958 0.18 -0.2 993,171 + ahpC SO0958 0.24 -0.6 993,230 - ahpC SO0958 0.35 +1.5 993,242 + ahpC SO0958 0.37 -0.9 993,242 + ahpC SO0958 0.37 +0.2 993,250 - ahpC SO0958 0.38 +0.7 993,250 - ahpC SO0958 0.38 +0.1 993,257 - ahpC SO0958 0.39 -0.3 993,356 - ahpC SO0958 0.57 +0.0 993,395 + ahpC SO0958 0.64 +1.0 993,441 + ahpC SO0958 0.72 +0.9 993,549 - -1.0 993,590 - -0.5 993,682 - -0.8 993,684 - +0.7 993,784 + -0.6 993,921 - +1.0 993,970 + -0.2 994,068 + -0.3 994,076 - -1.2 994,076 - +0.4 994,130 + pepA-1 SO0959 0.12 +0.3 994,234 + pepA-1 SO0959 0.19 +0.2 994,298 - pepA-1 SO0959 0.23 -0.0 994,391 + pepA-1 SO0959 0.29 -0.9 994,431 - pepA-1 SO0959 0.32 -0.1 994,559 + pepA-1 SO0959 0.40 +0.8 994,567 - pepA-1 SO0959 0.41 +0.2 994,590 + pepA-1 SO0959 0.42 +0.4
Or see this region's nucleotide sequence