Strain Fitness in Shewanella oneidensis MR-1 around SO4568

Experiment: L-Histidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (N)
4,762,738	-				+0.9
4,762,810	-				-0.7
4,762,826	-				+0.5
4,762,888	-		SO4566	0.51	+1.2
4,762,931	+		SO4566	0.84	-0.6
4,762,956	-				+0.6
4,762,958	+				+1.2
4,762,966	-				-0.6
4,763,043	+				+1.5
4,763,051	-				+0.3
4,763,053	-				+0.4
4,763,053	-				-0.2
4,763,116	+		SO4567	0.22	-0.1
4,763,148	+		SO4567	0.30	+0.2
4,763,226	+		SO4567	0.48	-0.7
4,763,243	+		SO4567	0.52	+1.0
4,763,248	+		SO4567	0.53	+2.2
4,763,248	+		SO4567	0.53	-0.1
4,763,248	+		SO4567	0.53	+0.2
4,763,248	+		SO4567	0.53	+0.5
4,763,251	-		SO4567	0.53	+0.2
4,763,256	-		SO4567	0.55	-0.6
4,763,336	+		SO4567	0.73	+0.2
4,763,338	+		SO4567	0.74	+0.1
4,763,423	-				-0.0
4,763,485	+				-0.5
4,763,494	-				-1.0
4,763,496	+				+0.1
4,763,525	-				-1.6
4,763,588	+				+0.7
4,763,596	-				-0.5
4,763,598	+				-0.2
4,763,598	+				-0.8
4,763,598	+				-0.2
4,763,598	+				+1.2
4,763,606	-				+0.3
4,763,606	-				-0.6
4,763,606	-				-0.6
4,763,642	+				+0.7
4,763,642	+				+0.3
4,763,650	-				-0.4
4,763,650	-				-0.8
4,763,650	-				-0.7
4,763,764	+				-0.7
4,763,772	-				+0.1
4,763,801	-				+1.1
4,763,805	-				-0.3
4,763,832	+	nrfD-2	SO4568	0.12	+0.7
4,763,840	-	nrfD-2	SO4568	0.13	-0.0
4,763,967	-	nrfD-2	SO4568	0.27	-0.4
4,763,967	-	nrfD-2	SO4568	0.27	+1.4
4,764,023	-	nrfD-2	SO4568	0.32	-0.5
4,764,063	-	nrfD-2	SO4568	0.37	+0.9
4,764,073	-	nrfD-2	SO4568	0.38	+1.0
4,764,075	+	nrfD-2	SO4568	0.38	-0.3
4,764,082	+	nrfD-2	SO4568	0.39	+1.2
4,764,110	-	nrfD-2	SO4568	0.42	+1.6
4,764,164	+	nrfD-2	SO4568	0.47	+1.0
4,764,178	+	nrfD-2	SO4568	0.49	-0.0
4,764,323	+	nrfD-2	SO4568	0.64	+0.8
4,764,386	-	nrfD-2	SO4568	0.71	-0.0
4,764,417	-	nrfD-2	SO4568	0.74	-0.0
4,764,443	-	nrfD-2	SO4568	0.77	+0.4
4,764,478	+	nrfD-2	SO4568	0.81	+1.6
4,764,490	+	nrfD-2	SO4568	0.82	-0.2
4,764,503	-	nrfD-2	SO4568	0.83	+0.7
4,764,509	+	nrfD-2	SO4568	0.84	-0.3
4,764,523	+	nrfD-2	SO4568	0.86	-0.2
4,764,528	+	nrfD-2	SO4568	0.86	+1.5
4,764,528	+	nrfD-2	SO4568	0.86	-0.2
4,764,536	-	nrfD-2	SO4568	0.87	-0.6
4,764,594	+				-0.2
4,764,669	+				+0.3
4,764,677	-				+0.5
4,764,719	+				-0.1
4,764,722	-				-0.7
4,764,727	-				-0.5
4,764,727	-				+0.4
4,764,738	+				+0.4
4,764,746	-				+0.4
4,764,746	-				+3.1
4,764,751	-				-0.5
4,764,751	-				+0.5
4,764,751	-				-1.4
4,764,761	-				-0.3
4,764,761	-				+1.6
4,764,768	-		SO4570	0.11	-0.2
4,764,796	-		SO4570	0.18	+1.2
4,764,806	+		SO4570	0.21	+0.8
4,764,814	-		SO4570	0.23	+0.6
4,764,815	-		SO4570	0.23	-0.3
4,764,832	+		SO4570	0.27	-0.7
4,764,833	+		SO4570	0.27	+0.4
4,764,840	-		SO4570	0.29	+0.8
4,764,861	-		SO4570	0.34	-0.1
4,764,880	+		SO4570	0.39	+0.0
4,764,915	-		SO4570	0.47	-0.3
4,764,918	-		SO4570	0.48	+0.4
4,764,918	-		SO4570	0.48	+0.3
4,764,923	-		SO4570	0.49	-0.6
4,765,087	+		SO4570	0.89	-0.1
4,765,095	-				+0.5
4,765,103	-				+1.6
4,765,106	+				-0.7
4,765,119	+				-0.5
4,765,119	+				-0.9
4,765,119	+				-0.1
4,765,119	+				+0.1
4,765,119	+				-0.4
4,765,119	+				+0.7
4,765,119	+				+0.1
4,765,121	+				+1.3
4,765,122	-				-0.6
4,765,127	-				-1.5
4,765,127	-				-1.0
4,765,127	-				-0.2
4,765,127	-				+0.1
4,765,127	-				+0.6
4,765,127	-				-1.4
4,765,129	-				-0.4
4,765,129	-				+0.7
4,765,129	-				-0.8
4,765,220	+				+0.1
4,765,223	-				-0.8
4,765,284	+				+0.3
4,765,324	-				+1.1
4,765,342	-				+0.2
4,765,398	+				+0.4
4,765,398	-				-1.5
4,765,406	-				+0.8
4,765,421	-				+0.0
4,765,430	+				+0.2
4,765,430	+				-0.0
4,765,430	+				+2.9
4,765,433	-				+0.3
4,765,433	-				+1.1
4,765,443	+				-1.6
4,765,450	-				+1.8
4,765,450	-				-0.2
4,765,463	+		SO4571	0.11	+0.4
4,765,464	-		SO4571	0.11	+0.1
4,765,466	-		SO4571	0.11	-0.8
4,765,468	+		SO4571	0.11	+1.3
4,765,470	+		SO4571	0.11	-0.2
4,765,471	-		SO4571	0.12	-0.1
4,765,478	-		SO4571	0.12	+1.2
4,765,483	-		SO4571	0.13	+0.2
4,765,483	-		SO4571	0.13	-0.2
4,765,487	-		SO4571	0.13	+0.0
4,765,487	-		SO4571	0.13	-0.1
4,765,487	-		SO4571	0.13	+0.1
4,765,494	-		SO4571	0.14	-0.2
4,765,494	-		SO4571	0.14	+0.2
4,765,512	+		SO4571	0.16	+0.5
4,765,512	+		SO4571	0.16	+2.8
4,765,520	-		SO4571	0.17	+0.1
4,765,520	-		SO4571	0.17	-0.4
4,765,520	-		SO4571	0.17	-1.5
4,765,520	-		SO4571	0.17	-0.8
4,765,520	-		SO4571	0.17	+0.2
4,765,522	+		SO4571	0.17	+1.3
4,765,522	+		SO4571	0.17	-0.1
4,765,530	-		SO4571	0.18	+0.5
4,765,531	-		SO4571	0.18	-1.7
4,765,531	-		SO4571	0.18	+0.1
4,765,533	+		SO4571	0.18	+1.5
4,765,533	+		SO4571	0.18	-0.2
4,765,533	+		SO4571	0.18	+0.5
4,765,533	+		SO4571	0.18	+0.5
4,765,533	+		SO4571	0.18	+0.4
4,765,541	-		SO4571	0.19	-0.3
4,765,541	-		SO4571	0.19	+0.8
4,765,541	-		SO4571	0.19	+0.9
4,765,541	-		SO4571	0.19	-0.3
4,765,541	-		SO4571	0.19	-0.2
4,765,541	-		SO4571	0.19	-0.1
4,765,541	-		SO4571	0.19	-1.6
4,765,556	+		SO4571	0.20	+0.5
4,765,556	+		SO4571	0.20	+1.2
4,765,556	+		SO4571	0.20	+0.1
4,765,556	+		SO4571	0.20	+0.7
4,765,556	+		SO4571	0.20	-0.9
4,765,556	+		SO4571	0.20	+0.6
4,765,556	+		SO4571	0.20	-0.1
4,765,556	+		SO4571	0.20	+0.0
4,765,556	+		SO4571	0.20	-0.3
4,765,556	+		SO4571	0.20	+1.2
4,765,556	+		SO4571	0.20	-0.3
4,765,556	+		SO4571	0.20	+1.3
4,765,556	+		SO4571	0.20	-0.4
4,765,556	+		SO4571	0.20	+0.6
4,765,556	+		SO4571	0.20	-1.2
4,765,556	+		SO4571	0.20	+0.4
4,765,556	+		SO4571	0.20	+1.3
4,765,556	+		SO4571	0.20	+0.2
4,765,558	+		SO4571	0.21	-0.7
4,765,558	+		SO4571	0.21	-0.4
4,765,558	+		SO4571	0.21	+0.7
4,765,564	-		SO4571	0.21	-0.0
4,765,564	-		SO4571	0.21	+0.4
4,765,564	-		SO4571	0.21	-0.6
4,765,564	-		SO4571	0.21	+0.4
4,765,564	-		SO4571	0.21	+0.3
4,765,564	-		SO4571	0.21	-1.0
4,765,564	-		SO4571	0.21	-0.4
4,765,564	-		SO4571	0.21	+0.1
4,765,564	-		SO4571	0.21	-0.3
4,765,564	-		SO4571	0.21	+0.3
4,765,564	-		SO4571	0.21	-0.2
4,765,564	-		SO4571	0.21	-1.0
4,765,564	-		SO4571	0.21	+1.2
4,765,564	-		SO4571	0.21	+0.8
4,765,564	-		SO4571	0.21	-0.8
4,765,564	-		SO4571	0.21	+0.4
4,765,564	-		SO4571	0.21	-0.7
4,765,564	-		SO4571	0.21	+0.3
4,765,564	-		SO4571	0.21	-0.9
4,765,564	-		SO4571	0.21	-1.8
4,765,564	-		SO4571	0.21	-0.1
4,765,564	-		SO4571	0.21	+0.5
4,765,564	-		SO4571	0.21	+1.0
4,765,566	-		SO4571	0.21	+0.3
4,765,580	-		SO4571	0.23	-0.0
4,765,591	+		SO4571	0.24	+0.9
4,765,591	+		SO4571	0.24	+0.3
4,765,591	+		SO4571	0.24	+1.1
4,765,591	+		SO4571	0.24	+0.4
4,765,591	+		SO4571	0.24	+0.5
4,765,591	+		SO4571	0.24	-0.8
4,765,591	+		SO4571	0.24	+0.6
4,765,591	+		SO4571	0.24	+0.9
4,765,591	+		SO4571	0.24	+0.9
4,765,597	-		SO4571	0.25	+1.3
4,765,599	-		SO4571	0.25	-0.1
4,765,599	-		SO4571	0.25	-1.4
4,765,599	-		SO4571	0.25	+0.9
4,765,599	-		SO4571	0.25	-0.1
4,765,599	-		SO4571	0.25	+0.1
4,765,599	-		SO4571	0.25	+1.1
4,765,599	-		SO4571	0.25	+0.2
4,765,599	-		SO4571	0.25	-0.4
4,765,649	+		SO4571	0.30	-0.5
4,765,649	+		SO4571	0.30	-1.7
4,765,649	+		SO4571	0.30	-0.0
4,765,649	+		SO4571	0.30	+0.9
4,765,649	+		SO4571	0.30	-0.8
4,765,649	+		SO4571	0.30	-1.3
4,765,649	+		SO4571	0.30	-0.8
4,765,649	+		SO4571	0.30	+2.0
4,765,649	+		SO4571	0.30	+0.6
4,765,649	+		SO4571	0.30	-0.4
4,765,649	+		SO4571	0.30	-0.3
4,765,649	+		SO4571	0.30	-0.7
4,765,649	+		SO4571	0.30	+0.5
4,765,649	+		SO4571	0.30	+1.3
4,765,649	+		SO4571	0.30	-0.9
4,765,649	+		SO4571	0.30	+0.6
4,765,649	+		SO4571	0.30	+0.3
4,765,649	+		SO4571	0.30	-0.9
4,765,649	+		SO4571	0.30	+0.8
4,765,649	+		SO4571	0.30	+0.8
4,765,649	+		SO4571	0.30	+1.7
4,765,649	+		SO4571	0.30	+0.1
4,765,649	+		SO4571	0.30	+1.4
4,765,649	+		SO4571	0.30	+0.0
4,765,649	+		SO4571	0.30	+0.6
4,765,657	-		SO4571	0.31	-0.5
4,765,657	-		SO4571	0.31	+0.2
4,765,657	-		SO4571	0.31	+0.2
4,765,657	-		SO4571	0.31	-1.3
4,765,657	-		SO4571	0.31	-0.8
4,765,657	-		SO4571	0.31	-0.0
4,765,657	-		SO4571	0.31	-1.3
4,765,657	-		SO4571	0.31	+0.1
4,765,657	-		SO4571	0.31	-1.7
4,765,657	-		SO4571	0.31	-1.2
4,765,657	-		SO4571	0.31	-0.0
4,765,657	-		SO4571	0.31	+0.0
4,765,657	-		SO4571	0.31	+0.3
4,765,657	-		SO4571	0.31	+0.9