Strain Fitness in Shewanella oneidensis MR-1 around SO2417

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnrdB and SO2417 are separated by 17 nucleotidesSO2417 and SO2418 are separated by 316 nucleotides SO2416: nrdB - ribonucleoside-diphosphate reductase, beta subunit (NCBI ptt file), at 2,523,226 to 2,524,356 nrdB SO2417: SO2417 - iron-sulfur cluster-binding protein (NCBI ptt file), at 2,524,374 to 2,524,808 SO2417 SO2418: SO2418 - ISSod5, transposase (NCBI ptt file), at 2,525,125 to 2,526,330 SO2418 Position (kb) 2524 2525Strain fitness (log2 ratio) -2 -1 0 1at 2524.613 kb on + strand, within SO2417at 2524.621 kb on - strand, within SO2417at 2524.623 kb on + strand, within SO2417at 2524.675 kb on - strand, within SO2417at 2524.870 kb on - strandat 2524.931 kb on + strandat 2525.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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2,524,613 + SO2417 0.55 -0.8
2,524,621 - SO2417 0.57 -0.5
2,524,623 + SO2417 0.57 -2.5
2,524,675 - SO2417 0.69 -2.3
2,524,870 - +0.2
2,524,931 + -1.8
2,525,073 - +0.2

Or see this region's nucleotide sequence