Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gcvT and gcvH are separated by 25 nucleotides gcvH and gcvP are separated by 122 nucleotides gcvP and SO0782 are separated by 347 nucleotides
SO0779: gcvT - glycine cleavage system T protein (NCBI ptt file), at 791,897 to 792,991
gcvT
SO0780: gcvH - glycine cleavage system H protein (NCBI ptt file), at 793,017 to 793,406
gcvH
SO0781: gcvP - glycine cleavage system P protein (NCBI ptt file), at 793,529 to 796,417
gcvP
SO0782: SO0782 - hypothetical protein (NCBI ptt file), at 796,765 to 797,424
SO0782
Position (kb) 793
794
795
796
797 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 792.535 kb on - strand, within gcvT at 792.540 kb on + strand, within gcvT at 792.540 kb on + strand, within gcvT at 792.554 kb on + strand, within gcvT at 792.590 kb on + strand, within gcvT at 792.598 kb on - strand, within gcvT at 792.667 kb on + strand, within gcvT at 792.810 kb on + strand, within gcvT at 792.855 kb on + strand, within gcvT at 792.945 kb on + strand at 793.082 kb on - strand, within gcvH at 793.093 kb on - strand, within gcvH at 793.105 kb on - strand, within gcvH at 793.115 kb on - strand, within gcvH at 793.179 kb on + strand, within gcvH at 793.187 kb on - strand, within gcvH at 793.248 kb on - strand, within gcvH at 793.259 kb on + strand, within gcvH at 793.262 kb on - strand, within gcvH at 793.277 kb on - strand, within gcvH at 793.287 kb on - strand, within gcvH at 793.353 kb on + strand, within gcvH at 793.536 kb on + strand at 793.544 kb on - strand at 793.694 kb on + strand at 794.011 kb on + strand, within gcvP at 794.019 kb on - strand, within gcvP at 794.019 kb on - strand, within gcvP at 794.087 kb on - strand, within gcvP at 794.267 kb on + strand, within gcvP at 794.313 kb on + strand, within gcvP at 794.313 kb on + strand, within gcvP at 794.318 kb on + strand, within gcvP at 794.321 kb on - strand, within gcvP at 794.341 kb on + strand, within gcvP at 794.478 kb on - strand, within gcvP at 794.663 kb on + strand, within gcvP at 794.663 kb on + strand, within gcvP at 794.711 kb on + strand, within gcvP at 794.711 kb on + strand, within gcvP at 794.711 kb on + strand, within gcvP at 794.719 kb on - strand, within gcvP at 794.737 kb on - strand, within gcvP at 794.828 kb on - strand, within gcvP at 794.865 kb on + strand, within gcvP at 794.872 kb on - strand, within gcvP at 794.873 kb on - strand, within gcvP at 794.873 kb on - strand, within gcvP at 795.119 kb on - strand, within gcvP at 795.154 kb on + strand, within gcvP at 795.168 kb on - strand, within gcvP at 795.195 kb on - strand, within gcvP at 795.235 kb on + strand, within gcvP at 795.261 kb on - strand, within gcvP at 795.565 kb on - strand, within gcvP at 795.565 kb on - strand, within gcvP at 795.640 kb on + strand, within gcvP at 795.649 kb on + strand, within gcvP at 795.683 kb on + strand, within gcvP at 795.696 kb on - strand, within gcvP at 795.737 kb on + strand, within gcvP at 795.826 kb on - strand, within gcvP at 795.838 kb on + strand, within gcvP at 795.852 kb on + strand, within gcvP at 795.889 kb on + strand, within gcvP at 795.927 kb on - strand, within gcvP at 795.930 kb on + strand, within gcvP at 795.930 kb on + strand, within gcvP at 795.930 kb on + strand, within gcvP at 795.930 kb on + strand, within gcvP at 795.935 kb on + strand, within gcvP at 795.938 kb on - strand, within gcvP at 795.938 kb on - strand, within gcvP at 795.938 kb on - strand, within gcvP at 795.938 kb on - strand, within gcvP at 795.938 kb on - strand, within gcvP at 795.938 kb on - strand, within gcvP at 795.938 kb on - strand, within gcvP at 795.938 kb on - strand, within gcvP at 795.943 kb on - strand, within gcvP at 795.943 kb on - strand, within gcvP at 795.976 kb on - strand, within gcvP at 796.005 kb on + strand, within gcvP at 796.005 kb on + strand, within gcvP at 796.013 kb on - strand, within gcvP at 796.120 kb on + strand, within gcvP at 796.128 kb on - strand, within gcvP at 796.157 kb on - strand at 796.183 kb on + strand at 796.183 kb on + strand at 796.183 kb on + strand at 796.205 kb on + strand at 796.230 kb on - strand at 796.250 kb on + strand at 796.250 kb on + strand at 796.250 kb on + strand at 796.258 kb on - strand at 796.284 kb on + strand at 796.284 kb on + strand at 796.284 kb on + strand at 796.292 kb on - strand at 796.308 kb on + strand at 796.338 kb on - strand at 796.340 kb on + strand at 796.340 kb on + strand at 796.358 kb on - strand at 796.386 kb on + strand at 796.418 kb on - strand at 796.426 kb on - strand at 796.426 kb on - strand at 796.426 kb on - strand at 796.435 kb on + strand at 796.435 kb on + strand at 796.440 kb on + strand at 796.448 kb on - strand at 796.448 kb on - strand at 796.465 kb on + strand at 796.465 kb on + strand at 796.473 kb on - strand at 796.474 kb on - strand at 796.511 kb on + strand at 796.519 kb on - strand at 796.519 kb on - strand at 796.519 kb on - strand at 796.526 kb on + strand at 796.546 kb on + strand at 796.546 kb on + strand at 796.546 kb on + strand at 796.569 kb on + strand at 796.577 kb on - strand at 796.577 kb on - strand at 796.624 kb on - strand at 796.624 kb on - strand at 796.626 kb on - strand at 796.634 kb on - strand at 796.634 kb on - strand at 796.635 kb on - strand at 796.642 kb on - strand at 796.715 kb on + strand at 796.715 kb on + strand at 796.723 kb on - strand at 796.723 kb on - strand at 796.723 kb on - strand at 796.726 kb on + strand at 796.745 kb on + strand at 796.745 kb on + strand at 796.748 kb on - strand at 796.753 kb on - strand at 796.753 kb on - strand at 796.815 kb on - strand at 796.815 kb on - strand at 796.904 kb on + strand, within SO0782 at 796.904 kb on + strand, within SO0782 at 796.951 kb on + strand, within SO0782 at 796.958 kb on - strand, within SO0782 at 796.960 kb on + strand, within SO0782 at 796.978 kb on - strand, within SO0782 at 796.994 kb on + strand, within SO0782 at 796.994 kb on + strand, within SO0782 at 796.994 kb on + strand, within SO0782 at 797.001 kb on + strand, within SO0782 at 797.002 kb on - strand, within SO0782 at 797.002 kb on - strand, within SO0782 at 797.002 kb on - strand, within SO0782 at 797.002 kb on - strand, within SO0782 at 797.096 kb on - strand, within SO0782 at 797.145 kb on + strand, within SO0782 at 797.145 kb on + strand, within SO0782 at 797.164 kb on - strand, within SO0782 at 797.172 kb on - strand, within SO0782 at 797.172 kb on - strand, within SO0782 at 797.177 kb on + strand, within SO0782 at 797.178 kb on + strand, within SO0782 at 797.237 kb on + strand, within SO0782 at 797.237 kb on + strand, within SO0782 at 797.266 kb on + strand, within SO0782 at 797.311 kb on - strand, within SO0782 at 797.339 kb on + strand, within SO0782 at 797.347 kb on - strand, within SO0782 at 797.352 kb on + strand, within SO0782 at 797.361 kb on - strand at 797.362 kb on + strand at 797.367 kb on - strand at 797.369 kb on - strand at 797.370 kb on - strand at 797.370 kb on - strand at 797.370 kb on - strand at 797.370 kb on - strand at 797.370 kb on - strand at 797.370 kb on - strand at 797.377 kb on - strand at 797.377 kb on - strand at 797.377 kb on - strand at 797.377 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 792,535 - gcvT SO0779 0.58 -3.4 792,540 + gcvT SO0779 0.59 -1.2 792,540 + gcvT SO0779 0.59 -0.6 792,554 + gcvT SO0779 0.60 -1.2 792,590 + gcvT SO0779 0.63 +0.4 792,598 - gcvT SO0779 0.64 -0.1 792,667 + gcvT SO0779 0.70 -0.7 792,810 + gcvT SO0779 0.83 -1.1 792,855 + gcvT SO0779 0.87 -1.9 792,945 + +0.0 793,082 - gcvH SO0780 0.17 -2.3 793,093 - gcvH SO0780 0.19 -1.9 793,105 - gcvH SO0780 0.23 -0.1 793,115 - gcvH SO0780 0.25 -1.2 793,179 + gcvH SO0780 0.42 -0.1 793,187 - gcvH SO0780 0.44 -1.7 793,248 - gcvH SO0780 0.59 +0.2 793,259 + gcvH SO0780 0.62 -0.9 793,262 - gcvH SO0780 0.63 -0.5 793,277 - gcvH SO0780 0.67 +0.2 793,287 - gcvH SO0780 0.69 +0.9 793,353 + gcvH SO0780 0.86 +1.9 793,536 + -1.0 793,544 - -0.4 793,694 + -1.9 794,011 + gcvP SO0781 0.17 -2.4 794,019 - gcvP SO0781 0.17 -0.4 794,019 - gcvP SO0781 0.17 +0.2 794,087 - gcvP SO0781 0.19 -2.5 794,267 + gcvP SO0781 0.26 -1.0 794,313 + gcvP SO0781 0.27 -2.8 794,313 + gcvP SO0781 0.27 -0.3 794,318 + gcvP SO0781 0.27 +0.3 794,321 - gcvP SO0781 0.27 -0.0 794,341 + gcvP SO0781 0.28 -0.7 794,478 - gcvP SO0781 0.33 -0.7 794,663 + gcvP SO0781 0.39 -0.3 794,663 + gcvP SO0781 0.39 -1.9 794,711 + gcvP SO0781 0.41 -1.6 794,711 + gcvP SO0781 0.41 -1.1 794,711 + gcvP SO0781 0.41 -1.7 794,719 - gcvP SO0781 0.41 +0.2 794,737 - gcvP SO0781 0.42 +1.1 794,828 - gcvP SO0781 0.45 -1.6 794,865 + gcvP SO0781 0.46 +0.1 794,872 - gcvP SO0781 0.46 -2.7 794,873 - gcvP SO0781 0.47 -0.9 794,873 - gcvP SO0781 0.47 -0.4 795,119 - gcvP SO0781 0.55 -1.1 795,154 + gcvP SO0781 0.56 +0.0 795,168 - gcvP SO0781 0.57 -1.0 795,195 - gcvP SO0781 0.58 -1.2 795,235 + gcvP SO0781 0.59 -0.7 795,261 - gcvP SO0781 0.60 -0.0 795,565 - gcvP SO0781 0.70 -1.1 795,565 - gcvP SO0781 0.70 -1.6 795,640 + gcvP SO0781 0.73 +0.2 795,649 + gcvP SO0781 0.73 -2.4 795,683 + gcvP SO0781 0.75 -0.7 795,696 - gcvP SO0781 0.75 -1.1 795,737 + gcvP SO0781 0.76 -0.1 795,826 - gcvP SO0781 0.80 -1.7 795,838 + gcvP SO0781 0.80 -0.7 795,852 + gcvP SO0781 0.80 -0.2 795,889 + gcvP SO0781 0.82 -3.1 795,927 - gcvP SO0781 0.83 -1.5 795,930 + gcvP SO0781 0.83 -0.2 795,930 + gcvP SO0781 0.83 -2.2 795,930 + gcvP SO0781 0.83 -1.2 795,930 + gcvP SO0781 0.83 +0.8 795,935 + gcvP SO0781 0.83 -1.5 795,938 - gcvP SO0781 0.83 -2.1 795,938 - gcvP SO0781 0.83 -1.2 795,938 - gcvP SO0781 0.83 -3.1 795,938 - gcvP SO0781 0.83 +0.3 795,938 - gcvP SO0781 0.83 -0.6 795,938 - gcvP SO0781 0.83 -1.5 795,938 - gcvP SO0781 0.83 -0.3 795,938 - gcvP SO0781 0.83 -1.0 795,943 - gcvP SO0781 0.84 -1.1 795,943 - gcvP SO0781 0.84 -2.4 795,976 - gcvP SO0781 0.85 -0.4 796,005 + gcvP SO0781 0.86 +0.1 796,005 + gcvP SO0781 0.86 -1.9 796,013 - gcvP SO0781 0.86 -2.1 796,120 + gcvP SO0781 0.90 -1.6 796,128 - gcvP SO0781 0.90 -1.6 796,157 - -0.9 796,183 + -1.4 796,183 + -1.1 796,183 + -1.2 796,205 + -2.0 796,230 - -0.5 796,250 + -0.4 796,250 + -2.9 796,250 + +0.1 796,258 - -1.3 796,284 + -1.2 796,284 + +0.9 796,284 + -1.9 796,292 - +0.2 796,308 + -1.3 796,338 - -0.8 796,340 + -1.5 796,340 + -1.5 796,358 - -2.1 796,386 + -1.4 796,418 - +1.0 796,426 - -1.2 796,426 - -1.2 796,426 - -0.9 796,435 + -0.1 796,435 + +0.7 796,440 + +0.4 796,448 - +0.4 796,448 - -0.4 796,465 + -0.4 796,465 + +0.5 796,473 - -0.8 796,474 - -0.8 796,511 + -1.3 796,519 - +1.2 796,519 - +0.4 796,519 - -0.3 796,526 + -0.2 796,546 + -0.4 796,546 + -0.4 796,546 + -0.4 796,569 + -0.5 796,577 - +0.6 796,577 - +1.4 796,624 - -1.3 796,624 - -1.0 796,626 - -0.0 796,634 - +0.0 796,634 - +1.5 796,635 - -1.1 796,642 - +0.7 796,715 + -0.0 796,715 + +1.1 796,723 - +0.8 796,723 - +0.1 796,723 - +0.3 796,726 + -0.2 796,745 + -0.3 796,745 + -1.2 796,748 - -0.9 796,753 - +0.3 796,753 - +1.1 796,815 - -0.4 796,815 - +0.7 796,904 + SO0782 0.21 +1.4 796,904 + SO0782 0.21 -0.9 796,951 + SO0782 0.28 +1.0 796,958 - SO0782 0.29 -0.4 796,960 + SO0782 0.30 -0.4 796,978 - SO0782 0.32 -0.3 796,994 + SO0782 0.35 -1.5 796,994 + SO0782 0.35 +0.5 796,994 + SO0782 0.35 +2.1 797,001 + SO0782 0.36 -1.1 797,002 - SO0782 0.36 -0.9 797,002 - SO0782 0.36 -0.7 797,002 - SO0782 0.36 -0.4 797,002 - SO0782 0.36 -1.1 797,096 - SO0782 0.50 +0.2 797,145 + SO0782 0.58 -0.8 797,145 + SO0782 0.58 -1.5 797,164 - SO0782 0.60 -1.4 797,172 - SO0782 0.62 -0.4 797,172 - SO0782 0.62 -1.2 797,177 + SO0782 0.62 -0.7 797,178 + SO0782 0.63 -0.0 797,237 + SO0782 0.72 -0.5 797,237 + SO0782 0.72 -0.7 797,266 + SO0782 0.76 +1.9 797,311 - SO0782 0.83 -0.3 797,339 + SO0782 0.87 +2.6 797,347 - SO0782 0.88 +0.9 797,352 + SO0782 0.89 -0.7 797,361 - +0.0 797,362 + -0.3 797,367 - +0.4 797,369 - -0.4 797,370 - +2.0 797,370 - +0.3 797,370 - +0.1 797,370 - -0.3 797,370 - +0.6 797,370 - -0.3 797,377 - -0.2 797,377 - -0.6 797,377 - +0.5 797,377 - +0.0
Or see this region's nucleotide sequence