Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0338 and SO0339 are separated by 17 nucleotides SO0339 and ilvE are separated by 226 nucleotides ilvE and SO0341 are separated by 40 nucleotides
SO0338: SO0338 - hypothetical protein (NCBI ptt file), at 339,476 to 339,811
SO0338
SO0339: SO0339 - hypothetical transcriptional antiterminator (NCBI ptt file), at 339,829 to 340,101
SO0339
SO0340: ilvE - branched-chain amino acid aminotransferase (NCBI ptt file), at 340,328 to 341,419
ilvE
SO0341: SO0341 - sensory box protein (NCBI ptt file), at 341,460 to 346,007
SO0341
Position (kb) 340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 339.395 kb on - strand at 339.395 kb on - strand at 339.395 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.427 kb on + strand at 339.525 kb on + strand, within SO0338 at 339.656 kb on + strand, within SO0338 at 339.679 kb on - strand, within SO0338 at 339.689 kb on + strand, within SO0338 at 339.691 kb on - strand, within SO0338 at 339.702 kb on - strand, within SO0338 at 339.779 kb on - strand at 339.897 kb on + strand, within SO0339 at 339.975 kb on - strand, within SO0339 at 339.992 kb on + strand, within SO0339 at 340.000 kb on - strand, within SO0339 at 340.000 kb on - strand, within SO0339 at 340.002 kb on - strand, within SO0339 at 340.045 kb on + strand, within SO0339 at 340.050 kb on + strand, within SO0339 at 340.156 kb on + strand at 340.187 kb on + strand at 340.197 kb on - strand at 340.230 kb on + strand at 340.242 kb on + strand at 340.286 kb on + strand at 340.301 kb on + strand at 340.326 kb on - strand at 340.411 kb on + strand at 340.411 kb on + strand at 340.411 kb on + strand at 340.419 kb on - strand at 340.419 kb on - strand at 340.419 kb on - strand at 340.519 kb on + strand, within ilvE at 340.732 kb on - strand, within ilvE at 340.774 kb on + strand, within ilvE at 340.808 kb on - strand, within ilvE at 340.905 kb on + strand, within ilvE at 340.970 kb on - strand, within ilvE at 340.972 kb on + strand, within ilvE at 341.026 kb on + strand, within ilvE at 341.044 kb on - strand, within ilvE at 341.341 kb on + strand at 341.455 kb on - strand at 341.455 kb on - strand at 341.555 kb on - strand at 341.573 kb on + strand at 341.573 kb on - strand at 341.576 kb on - strand at 341.591 kb on - strand at 341.669 kb on - strand at 341.669 kb on - strand at 341.793 kb on + strand at 341.884 kb on - strand at 341.906 kb on - strand at 341.949 kb on - strand, within SO0341 at 342.105 kb on - strand, within SO0341 at 342.140 kb on + strand, within SO0341 at 342.188 kb on + strand, within SO0341 at 342.380 kb on + strand, within SO0341 at 342.380 kb on + strand, within SO0341 at 342.380 kb on + strand, within SO0341 at 342.388 kb on - strand, within SO0341 at 342.388 kb on - strand, within SO0341 at 342.388 kb on - strand, within SO0341 at 342.388 kb on - strand, within SO0341 at 342.388 kb on - strand, within SO0341 at 342.388 kb on - strand, within SO0341 at 342.388 kb on - strand, within SO0341 at 342.388 kb on - strand, within SO0341
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 339,395 - +0.3 339,395 - +0.7 339,395 - -1.1 339,401 - -0.5 339,401 - -0.2 339,401 - -0.3 339,401 - +1.6 339,427 + +1.1 339,525 + SO0338 0.15 -0.1 339,656 + SO0338 0.54 -0.8 339,679 - SO0338 0.60 +1.5 339,689 + SO0338 0.63 +0.0 339,691 - SO0338 0.64 +0.0 339,702 - SO0338 0.67 -0.9 339,779 - +0.2 339,897 + SO0339 0.25 -0.9 339,975 - SO0339 0.53 -0.3 339,992 + SO0339 0.60 -0.6 340,000 - SO0339 0.63 +0.5 340,000 - SO0339 0.63 +0.5 340,002 - SO0339 0.63 +0.1 340,045 + SO0339 0.79 -0.4 340,050 + SO0339 0.81 +0.0 340,156 + +0.7 340,187 + +0.6 340,197 - -0.1 340,230 + -1.2 340,242 + +0.8 340,286 + -0.9 340,301 + +1.1 340,326 - -2.2 340,411 + -2.4 340,411 + -3.6 340,411 + -1.6 340,419 - -1.4 340,419 - -1.8 340,419 - +0.9 340,519 + ilvE SO0340 0.17 -1.9 340,732 - ilvE SO0340 0.37 +0.0 340,774 + ilvE SO0340 0.41 -2.3 340,808 - ilvE SO0340 0.44 -1.1 340,905 + ilvE SO0340 0.53 +0.0 340,970 - ilvE SO0340 0.59 -0.6 340,972 + ilvE SO0340 0.59 -2.1 341,026 + ilvE SO0340 0.64 -0.7 341,044 - ilvE SO0340 0.66 -1.2 341,341 + -1.6 341,455 - -0.1 341,455 - +1.1 341,555 - +0.2 341,573 + +0.1 341,573 - +0.3 341,576 - +1.2 341,591 - +0.4 341,669 - -0.4 341,669 - +0.0 341,793 + -0.8 341,884 - -1.5 341,906 - +0.8 341,949 - SO0341 0.11 +1.6 342,105 - SO0341 0.14 +1.1 342,140 + SO0341 0.15 -1.5 342,188 + SO0341 0.16 -0.4 342,380 + SO0341 0.20 -0.7 342,380 + SO0341 0.20 +0.0 342,380 + SO0341 0.20 -0.2 342,388 - SO0341 0.20 +0.3 342,388 - SO0341 0.20 +1.8 342,388 - SO0341 0.20 -0.6 342,388 - SO0341 0.20 +1.3 342,388 - SO0341 0.20 +0.4 342,388 - SO0341 0.20 +0.1 342,388 - SO0341 0.20 -1.1 342,388 - SO0341 0.20 -0.7
Or see this region's nucleotide sequence