Strain Fitness in Shewanella oneidensis MR-1 around SO1038

Experiment: L-Arginine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arginine (N)
1,076,230	+	cobS	SO1036	0.83	-1.0
1,076,248	-	cobS	SO1036	0.85	-1.4
1,076,330	+				-0.1
1,076,373	+				-1.2
1,076,463	-	cobU	SO1037	0.17	-1.1
1,076,626	+	cobU	SO1037	0.44	+0.0
1,076,626	+	cobU	SO1037	0.44	-0.4
1,076,626	+	cobU	SO1037	0.44	-0.2
1,076,634	-	cobU	SO1037	0.45	-1.0
1,076,754	-	cobU	SO1037	0.65	-1.3
1,076,826	+	cobU	SO1037	0.77	+0.2
1,076,898	+	cobU	SO1037	0.89	+0.1
1,076,921	+				-0.5
1,076,961	+				-0.9
1,077,070	+				-0.0
1,077,115	-				-3.7
1,077,142	-				-1.1
1,077,194	+				-0.4
1,077,194	+				-0.3
1,077,194	+				+1.2
1,077,194	+				+0.3
1,077,194	-				-2.1
1,077,202	-				-2.3
1,077,202	-				-1.7
1,077,302	-				-3.9
1,077,318	-				-2.2
1,077,413	-	cobQ	SO1038	0.15	-1.7
1,077,438	+	cobQ	SO1038	0.17	+0.2
1,077,446	-	cobQ	SO1038	0.17	-2.0
1,077,446	-	cobQ	SO1038	0.17	-3.9
1,077,446	-	cobQ	SO1038	0.17	-1.6
1,077,446	-	cobQ	SO1038	0.17	-1.9
1,077,446	-	cobQ	SO1038	0.17	-2.5
1,077,510	+	cobQ	SO1038	0.22	+0.3
1,077,511	-	cobQ	SO1038	0.22	-1.0
1,077,538	-	cobQ	SO1038	0.23	-1.6
1,077,538	-	cobQ	SO1038	0.23	-1.8
1,077,582	-	cobQ	SO1038	0.26	-1.8
1,077,797	-	cobQ	SO1038	0.40	-2.9
1,077,912	+	cobQ	SO1038	0.48	+0.1
1,077,937	+	cobQ	SO1038	0.50	-0.2
1,078,042	-	cobQ	SO1038	0.56	-1.3
1,078,125	+	cobQ	SO1038	0.62	+0.4
1,078,125	+	cobQ	SO1038	0.62	+0.1
1,078,216	+	cobQ	SO1038	0.68	-0.0
1,078,242	+	cobQ	SO1038	0.69	-0.8
1,078,247	+	cobQ	SO1038	0.70	-0.8
1,078,252	+	cobQ	SO1038	0.70	-0.1
1,078,266	-	cobQ	SO1038	0.71	-1.5
1,078,308	+	cobQ	SO1038	0.74	+0.0
1,078,405	-	cobQ	SO1038	0.80	-2.8
1,078,429	-	cobQ	SO1038	0.82	-1.6
1,078,507	+	cobQ	SO1038	0.87	-0.5
1,078,531	+	cobQ	SO1038	0.88	-0.4
1,078,531	+	cobQ	SO1038	0.88	-0.4
1,078,541	+	cobQ	SO1038	0.89	-0.5
1,078,541	+	cobQ	SO1038	0.89	-1.2
1,078,549	-	cobQ	SO1038	0.89	-2.2
1,078,549	-	cobQ	SO1038	0.89	-3.6
1,078,549	-	cobQ	SO1038	0.89	-3.3
1,078,556	+	cobQ	SO1038	0.90	+0.2
1,078,576	+				-0.2
1,078,657	+				+0.4
1,078,657	+				+0.3
1,078,657	+				-0.0
1,078,657	+				-0.1
1,078,657	+				+0.2
1,078,657	+				+0.2
1,078,657	+				-0.6
1,078,657	+				-0.1
1,078,665	-				-3.0
1,078,665	-				-2.2
1,078,665	-				-1.8
1,078,665	-				-2.7
1,078,665	-				-4.9
1,078,697	+				-0.9
1,078,704	+				-0.6
1,078,712	-				-2.4
1,078,748	+				-3.7
1,078,765	+				-1.6
1,078,773	+				-2.7
1,078,780	-				-3.3
1,078,863	-	cobO	SO1039	0.22	-4.7
1,078,913	+	cobO	SO1039	0.30	-3.4
1,079,082	-	cobO	SO1039	0.57	-2.5
1,079,184	+	cobO	SO1039	0.73	-4.0
1,079,258	+	cobO	SO1039	0.85	-2.4
1,079,280	+	cobO	SO1039	0.89	-4.7
1,079,285	+	cobO	SO1039	0.90	-3.1
1,079,331	+				-3.9
1,079,339	-				-3.3
1,079,343	-				-3.7
1,079,370	+				+0.3
1,079,396	+		SO1040	0.20	+0.2
1,079,439	+		SO1040	0.48	+0.3
1,079,442	-		SO1040	0.50	-0.5
1,079,466	+		SO1040	0.66	-0.9
1,079,466	+		SO1040	0.66	-0.1
1,079,466	+		SO1040	0.66	+0.5
1,079,466	+		SO1040	0.66	-0.2
1,079,466	+		SO1040	0.66	+0.2
1,079,474	-		SO1040	0.71	+0.9
1,079,474	-		SO1040	0.71	+0.1
1,079,474	-		SO1040	0.71	-0.4
1,079,474	-		SO1040	0.71	-0.5
1,079,474	-		SO1040	0.71	+0.5
1,079,474	-		SO1040	0.71	+0.3
1,079,474	-		SO1040	0.71	+0.6
1,079,474	-		SO1040	0.71	-0.9
1,079,501	+		SO1040	0.89	+1.0
1,079,540	+				-0.3
1,079,542	+				-0.1
1,079,557	+				+0.0
1,079,565	-				-0.0
1,079,567	+				+0.1
1,079,567	+				+0.2
1,079,570	+				+0.4
1,079,570	+				-0.0
1,079,570	+				+0.1
1,079,570	+				-1.1
1,079,570	+				+0.7
1,079,575	-				-0.3
1,079,575	-				+0.4
1,079,575	-				-0.6
1,079,575	-				-0.5
1,079,575	-				+1.0
1,079,577	+				-0.3
1,079,577	+				+0.5
1,079,577	+				-1.4
1,079,577	+				+0.4
1,079,577	+				-0.3
1,079,577	+				-0.2
1,079,577	+				-0.1
1,079,577	+				-0.2
1,079,577	+				-1.0
1,079,577	+				+0.3
1,079,577	+				-0.1
1,079,577	+				+0.1
1,079,577	+				-0.3
1,079,577	+				+0.7
1,079,577	+				+0.0
1,079,577	+				+0.6
1,079,577	+				+0.9
1,079,577	+				-0.1
1,079,577	+				+0.9
1,079,577	+				-0.3
1,079,577	+				-0.2
1,079,577	+				+0.5
1,079,577	+				+0.2
1,079,578	-				+0.1
1,079,578	-				-0.3
1,079,578	-				+0.0
1,079,578	-				-1.5
1,079,578	-				-0.2
1,079,578	-				+1.1
1,079,578	-				-0.1
1,079,580	-				+0.1
1,079,580	-				-0.2
1,079,580	-				-0.3
1,079,582	+				-0.0
1,079,582	+				-0.4
1,079,582	+				+0.5
1,079,585	-				+0.5
1,079,585	-				+0.4
1,079,585	-				-0.1
1,079,585	-				-0.1
1,079,585	-				-0.4
1,079,585	-				-0.5
1,079,585	-				+0.7
1,079,585	-				-0.0
1,079,585	-				-0.3
1,079,585	-				-0.3
1,079,585	-				-0.3
1,079,585	-				-0.1
1,079,585	-				+0.2
1,079,585	-				-0.2
1,079,585	-				+0.3
1,079,585	-				-0.6
1,079,585	-				+0.1
1,079,585	-				+0.2
1,079,585	-				-0.6
1,079,585	-				+0.2
1,079,585	-				+1.3
1,079,585	-				+0.2
1,079,585	-				-0.0
1,079,585	-				+0.2
1,079,585	-				+0.1
1,079,585	-				+0.3
1,079,585	-				-0.1
1,079,585	-				-0.3
1,079,585	-				+0.3
1,079,585	-				+0.4
1,079,585	-				-0.8
1,079,590	-				-0.3
1,079,590	-				+0.1
1,079,590	-				+0.0
1,079,590	-				-0.9
1,079,590	-				-0.4
1,079,592	+				+0.3
1,079,592	+				+0.4
1,079,592	+				-1.0
1,079,592	+				+0.2
1,079,592	+				-0.0
1,079,592	+				-0.2
1,079,595	-				-0.2
1,079,595	-				+0.4
1,079,595	-				+0.2
1,079,600	-				+0.3
1,079,600	-				+0.1
1,079,600	-				+0.1
1,079,600	-				-0.2
1,079,600	-				-0.4
1,079,600	-				-0.3
1,079,611	+				+0.5
1,079,619	-				-0.5
1,079,640	+				-0.0
1,079,646	+				-0.2
1,079,646	+				-0.0
1,079,646	+				-0.1
1,079,646	+				+0.4
1,079,646	+				+0.6
1,079,646	+				-0.5
1,079,646	+				-0.4
1,079,648	-				-1.0
1,079,648	-				+0.1
1,079,648	-				+0.5
1,079,648	-				-0.2
1,079,648	-				+0.1
1,079,654	-				+0.2
1,079,654	-				+0.1
1,079,654	-				+0.1
1,079,691	+				+1.2