Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3985

Experiment: Def Cisplatin 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3984 and Psest_3985 are separated by 8 nucleotidesPsest_3985 and Psest_3986 are separated by 300 nucleotidesPsest_3986 and Psest_3987 are separated by 90 nucleotides Psest_3984: Psest_3984 - Methyl-accepting chemotaxis protein, at 4,151,963 to 4,153,984 _3984 Psest_3985: Psest_3985 - ATP-dependent DNA helicase, RecQ family, at 4,153,993 to 4,155,918 _3985 Psest_3986: Psest_3986 - Protein of unknown function (DUF2790)., at 4,156,219 to 4,156,461 _3986 Psest_3987: Psest_3987 - Nitroreductase, at 4,156,552 to 4,157,154 _3987 Position (kb) 4153 4154 4155 4156Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4153.208 kb on + strand, within Psest_3984at 4153.322 kb on - strand, within Psest_3984at 4153.334 kb on + strand, within Psest_3984at 4153.335 kb on - strand, within Psest_3984at 4153.995 kb on - strandat 4154.031 kb on - strandat 4154.146 kb on + strandat 4154.147 kb on - strandat 4154.147 kb on - strandat 4154.156 kb on + strandat 4154.157 kb on - strandat 4154.157 kb on - strandat 4154.301 kb on - strand, within Psest_3985at 4154.396 kb on + strand, within Psest_3985at 4154.396 kb on + strand, within Psest_3985at 4154.453 kb on + strand, within Psest_3985at 4154.507 kb on + strand, within Psest_3985at 4154.508 kb on - strand, within Psest_3985at 4154.508 kb on - strand, within Psest_3985at 4154.508 kb on - strand, within Psest_3985at 4154.678 kb on + strand, within Psest_3985at 4154.679 kb on - strand, within Psest_3985at 4154.679 kb on - strand, within Psest_3985at 4154.679 kb on - strand, within Psest_3985at 4154.679 kb on - strand, within Psest_3985at 4154.679 kb on - strand, within Psest_3985at 4154.702 kb on + strand, within Psest_3985at 4154.703 kb on - strand, within Psest_3985at 4154.775 kb on + strand, within Psest_3985at 4154.775 kb on + strand, within Psest_3985at 4154.776 kb on - strand, within Psest_3985at 4154.888 kb on + strand, within Psest_3985at 4154.987 kb on + strand, within Psest_3985at 4154.987 kb on + strand, within Psest_3985at 4154.987 kb on + strand, within Psest_3985at 4154.987 kb on + strand, within Psest_3985at 4154.987 kb on + strand, within Psest_3985at 4154.987 kb on + strand, within Psest_3985at 4154.987 kb on + strand, within Psest_3985at 4154.987 kb on + strand, within Psest_3985at 4154.987 kb on + strand, within Psest_3985at 4154.987 kb on + strand, within Psest_3985at 4154.987 kb on + strand, within Psest_3985at 4154.987 kb on + strand, within Psest_3985at 4154.987 kb on + strand, within Psest_3985at 4154.988 kb on - strand, within Psest_3985at 4154.988 kb on - strand, within Psest_3985at 4154.988 kb on - strand, within Psest_3985at 4154.988 kb on - strand, within Psest_3985at 4154.988 kb on - strand, within Psest_3985at 4154.988 kb on - strand, within Psest_3985at 4155.014 kb on + strand, within Psest_3985at 4155.015 kb on - strand, within Psest_3985at 4155.221 kb on + strand, within Psest_3985at 4155.221 kb on + strand, within Psest_3985at 4155.221 kb on + strand, within Psest_3985at 4155.222 kb on - strand, within Psest_3985at 4155.222 kb on - strand, within Psest_3985at 4155.222 kb on - strand, within Psest_3985at 4155.222 kb on - strand, within Psest_3985at 4155.222 kb on - strand, within Psest_3985at 4155.326 kb on + strand, within Psest_3985at 4155.326 kb on + strand, within Psest_3985at 4155.449 kb on + strand, within Psest_3985at 4155.467 kb on + strand, within Psest_3985at 4155.521 kb on - strand, within Psest_3985at 4155.521 kb on - strand, within Psest_3985at 4155.953 kb on - strandat 4156.096 kb on + strandat 4156.097 kb on - strandat 4156.097 kb on - strandat 4156.103 kb on - strandat 4156.114 kb on + strandat 4156.114 kb on + strandat 4156.114 kb on + strandat 4156.114 kb on + strandat 4156.114 kb on + strandat 4156.114 kb on + strandat 4156.114 kb on + strandat 4156.114 kb on + strandat 4156.115 kb on - strandat 4156.115 kb on - strandat 4156.115 kb on - strandat 4156.115 kb on - strandat 4156.115 kb on - strandat 4156.120 kb on + strandat 4156.121 kb on - strandat 4156.121 kb on - strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.194 kb on + strandat 4156.195 kb on - strandat 4156.195 kb on - strandat 4156.195 kb on - strandat 4156.195 kb on - strandat 4156.195 kb on - strandat 4156.195 kb on - strandat 4156.195 kb on - strandat 4156.195 kb on - strandat 4156.200 kb on + strandat 4156.200 kb on + strandat 4156.200 kb on + strandat 4156.200 kb on + strandat 4156.200 kb on + strandat 4156.201 kb on - strandat 4156.201 kb on - strandat 4156.201 kb on - strandat 4156.201 kb on - strandat 4156.201 kb on - strandat 4156.201 kb on - strandat 4156.201 kb on - strandat 4156.224 kb on + strandat 4156.224 kb on + strandat 4156.224 kb on + strandat 4156.224 kb on + strandat 4156.224 kb on + strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.225 kb on - strandat 4156.294 kb on + strand, within Psest_3986at 4156.295 kb on - strand, within Psest_3986at 4156.295 kb on - strand, within Psest_3986at 4156.296 kb on + strand, within Psest_3986at 4156.296 kb on + strand, within Psest_3986at 4156.296 kb on + strand, within Psest_3986at 4156.297 kb on - strand, within Psest_3986at 4156.297 kb on - strand, within Psest_3986at 4156.297 kb on - strand, within Psest_3986at 4156.297 kb on - strand, within Psest_3986at 4156.300 kb on + strand, within Psest_3986at 4156.300 kb on + strand, within Psest_3986at 4156.300 kb on + strand, within Psest_3986at 4156.301 kb on - strand, within Psest_3986at 4156.301 kb on - strand, within Psest_3986at 4156.301 kb on - strand, within Psest_3986at 4156.358 kb on - strand, within Psest_3986at 4156.367 kb on + strand, within Psest_3986at 4156.450 kb on + strandat 4156.573 kb on + strandat 4156.573 kb on + strandat 4156.574 kb on - strandat 4156.574 kb on - strandat 4156.820 kb on + strand, within Psest_3987at 4156.820 kb on + strand, within Psest_3987at 4156.821 kb on - strand, within Psest_3987at 4156.821 kb on - strand, within Psest_3987at 4156.821 kb on - strand, within Psest_3987at 4156.902 kb on + strand, within Psest_3987

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml
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4,153,208 + Psest_3984 0.62 -0.8
4,153,322 - Psest_3984 0.67 -1.1
4,153,334 + Psest_3984 0.68 -2.0
4,153,335 - Psest_3984 0.68 +0.1
4,153,995 - +1.0
4,154,031 - +0.8
4,154,146 + -0.6
4,154,147 - -0.4
4,154,147 - +0.5
4,154,156 + +1.0
4,154,157 - +0.2
4,154,157 - +0.2
4,154,301 - Psest_3985 0.16 +0.6
4,154,396 + Psest_3985 0.21 -0.3
4,154,396 + Psest_3985 0.21 +0.0
4,154,453 + Psest_3985 0.24 +0.5
4,154,507 + Psest_3985 0.27 -0.4
4,154,508 - Psest_3985 0.27 -0.3
4,154,508 - Psest_3985 0.27 -0.9
4,154,508 - Psest_3985 0.27 -0.1
4,154,678 + Psest_3985 0.36 -0.2
4,154,679 - Psest_3985 0.36 -0.0
4,154,679 - Psest_3985 0.36 -0.7
4,154,679 - Psest_3985 0.36 +0.0
4,154,679 - Psest_3985 0.36 +0.5
4,154,679 - Psest_3985 0.36 +1.6
4,154,702 + Psest_3985 0.37 +0.1
4,154,703 - Psest_3985 0.37 -0.7
4,154,775 + Psest_3985 0.41 +2.6
4,154,775 + Psest_3985 0.41 +0.1
4,154,776 - Psest_3985 0.41 +0.0
4,154,888 + Psest_3985 0.46 +0.8
4,154,987 + Psest_3985 0.52 +0.1
4,154,987 + Psest_3985 0.52 +0.5
4,154,987 + Psest_3985 0.52 -0.4
4,154,987 + Psest_3985 0.52 +0.2
4,154,987 + Psest_3985 0.52 +0.6
4,154,987 + Psest_3985 0.52 +0.3
4,154,987 + Psest_3985 0.52 +0.6
4,154,987 + Psest_3985 0.52 -0.3
4,154,987 + Psest_3985 0.52 -0.5
4,154,987 + Psest_3985 0.52 +1.6
4,154,987 + Psest_3985 0.52 -1.8
4,154,987 + Psest_3985 0.52 -0.1
4,154,987 + Psest_3985 0.52 +2.0
4,154,988 - Psest_3985 0.52 -0.7
4,154,988 - Psest_3985 0.52 +0.0
4,154,988 - Psest_3985 0.52 -0.4
4,154,988 - Psest_3985 0.52 +0.9
4,154,988 - Psest_3985 0.52 -0.1
4,154,988 - Psest_3985 0.52 -0.5
4,155,014 + Psest_3985 0.53 -0.9
4,155,015 - Psest_3985 0.53 -0.5
4,155,221 + Psest_3985 0.64 -0.3
4,155,221 + Psest_3985 0.64 -0.2
4,155,221 + Psest_3985 0.64 -0.3
4,155,222 - Psest_3985 0.64 -0.2
4,155,222 - Psest_3985 0.64 -0.4
4,155,222 - Psest_3985 0.64 -1.2
4,155,222 - Psest_3985 0.64 -0.0
4,155,222 - Psest_3985 0.64 -0.5
4,155,326 + Psest_3985 0.69 -0.4
4,155,326 + Psest_3985 0.69 +0.5
4,155,449 + Psest_3985 0.76 -0.8
4,155,467 + Psest_3985 0.77 +1.1
4,155,521 - Psest_3985 0.79 +0.6
4,155,521 - Psest_3985 0.79 +1.2
4,155,953 - -0.2
4,156,096 + +0.1
4,156,097 - -0.4
4,156,097 - -0.9
4,156,103 - -0.3
4,156,114 + +0.4
4,156,114 + +0.8
4,156,114 + -1.1
4,156,114 + +0.5
4,156,114 + +0.5
4,156,114 + -0.5
4,156,114 + +0.1
4,156,114 + +0.0
4,156,115 - +0.0
4,156,115 - -1.0
4,156,115 - -0.1
4,156,115 - +0.0
4,156,115 - -0.2
4,156,120 + -1.4
4,156,121 - -0.4
4,156,121 - +2.6
4,156,194 + -0.1
4,156,194 + +1.5
4,156,194 + +0.1
4,156,194 + -0.4
4,156,194 + +2.8
4,156,194 + +0.0
4,156,194 + +0.6
4,156,194 + +0.6
4,156,194 + +1.5
4,156,194 + +0.6
4,156,194 + -0.2
4,156,194 + -0.3
4,156,194 + -0.5
4,156,194 + +0.1
4,156,194 + +0.1
4,156,195 - -0.6
4,156,195 - -0.3
4,156,195 - +0.6
4,156,195 - +1.0
4,156,195 - -0.4
4,156,195 - +0.0
4,156,195 - -0.2
4,156,195 - +0.6
4,156,200 + -0.2
4,156,200 + -1.5
4,156,200 + -1.3
4,156,200 + -1.0
4,156,200 + +0.2
4,156,201 - -0.4
4,156,201 - -0.0
4,156,201 - -0.2
4,156,201 - -0.2
4,156,201 - +0.2
4,156,201 - -0.9
4,156,201 - -0.2
4,156,224 + +0.6
4,156,224 + -1.3
4,156,224 + -0.5
4,156,224 + -1.1
4,156,224 + +0.1
4,156,225 - +0.1
4,156,225 - -1.8
4,156,225 - -0.1
4,156,225 - -2.5
4,156,225 - +0.3
4,156,225 - +0.4
4,156,225 - +0.6
4,156,225 - -1.4
4,156,225 - +0.9
4,156,225 - -0.3
4,156,225 - +0.3
4,156,225 - -0.2
4,156,225 - -0.1
4,156,225 - -1.3
4,156,225 - -0.8
4,156,225 - -0.4
4,156,225 - +1.2
4,156,225 - +0.2
4,156,225 - +1.4
4,156,225 - +1.0
4,156,225 - +0.0
4,156,225 - -0.5
4,156,225 - +0.9
4,156,225 - +0.3
4,156,225 - -0.4
4,156,294 + Psest_3986 0.31 -0.7
4,156,295 - Psest_3986 0.31 -0.5
4,156,295 - Psest_3986 0.31 +0.2
4,156,296 + Psest_3986 0.32 -0.1
4,156,296 + Psest_3986 0.32 +0.0
4,156,296 + Psest_3986 0.32 +0.5
4,156,297 - Psest_3986 0.32 -1.3
4,156,297 - Psest_3986 0.32 -0.1
4,156,297 - Psest_3986 0.32 -0.5
4,156,297 - Psest_3986 0.32 -0.5
4,156,300 + Psest_3986 0.33 +0.3
4,156,300 + Psest_3986 0.33 +0.4
4,156,300 + Psest_3986 0.33 +1.0
4,156,301 - Psest_3986 0.34 +0.2
4,156,301 - Psest_3986 0.34 -1.0
4,156,301 - Psest_3986 0.34 +0.5
4,156,358 - Psest_3986 0.57 +0.2
4,156,367 + Psest_3986 0.61 -0.2
4,156,450 + +1.0
4,156,573 + +0.2
4,156,573 + +0.6
4,156,574 - -0.9
4,156,574 - -0.1
4,156,820 + Psest_3987 0.44 -0.5
4,156,820 + Psest_3987 0.44 +0.2
4,156,821 - Psest_3987 0.45 -0.2
4,156,821 - Psest_3987 0.45 -1.3
4,156,821 - Psest_3987 0.45 -0.3
4,156,902 + Psest_3987 0.58 -0.7

Or see this region's nucleotide sequence