Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3931

Experiment: Def Cisplatin 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3929 and Psest_3930 overlap by 4 nucleotidesPsest_3930 and Psest_3931 are separated by 169 nucleotidesPsest_3931 and Psest_3932 overlap by 4 nucleotides Psest_3929: Psest_3929 - hypothetical protein, at 4,101,306 to 4,101,860 _3929 Psest_3930: Psest_3930 - Penicillin-Binding Protein C-terminus Family., at 4,101,857 to 4,102,486 _3930 Psest_3931: Psest_3931 - Signal transduction histidine kinase, nitrogen specific, at 4,102,656 to 4,103,738 _3931 Psest_3932: Psest_3932 - nitrogen regulation protein NR(I), at 4,103,735 to 4,105,171 _3932 Position (kb) 4102 4103 4104Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.934 kb on + strand, within Psest_3930at 4101.934 kb on + strand, within Psest_3930at 4101.935 kb on - strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4102.089 kb on - strand, within Psest_3930at 4102.157 kb on - strand, within Psest_3930at 4102.196 kb on + strand, within Psest_3930at 4102.196 kb on + strand, within Psest_3930at 4102.409 kb on + strand, within Psest_3930at 4102.409 kb on + strand, within Psest_3930at 4102.409 kb on + strand, within Psest_3930at 4102.482 kb on + strandat 4102.482 kb on + strandat 4102.482 kb on + strandat 4102.482 kb on + strandat 4102.482 kb on + strandat 4102.483 kb on - strandat 4102.483 kb on - strandat 4102.483 kb on - strandat 4102.483 kb on - strandat 4102.740 kb on + strandat 4102.740 kb on + strandat 4102.740 kb on + strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.907 kb on + strand, within Psest_3931at 4102.932 kb on + strand, within Psest_3931at 4102.984 kb on + strand, within Psest_3931at 4102.984 kb on + strand, within Psest_3931at 4102.984 kb on + strand, within Psest_3931at 4102.985 kb on - strand, within Psest_3931at 4102.985 kb on - strand, within Psest_3931at 4102.985 kb on - strand, within Psest_3931at 4103.393 kb on + strand, within Psest_3931at 4103.393 kb on + strand, within Psest_3931at 4103.393 kb on + strand, within Psest_3931at 4103.708 kb on - strandat 4104.018 kb on - strand, within Psest_3932at 4104.039 kb on - strand, within Psest_3932at 4104.039 kb on - strand, within Psest_3932at 4104.039 kb on - strand, within Psest_3932at 4104.501 kb on + strand, within Psest_3932at 4104.521 kb on + strand, within Psest_3932at 4104.658 kb on + strand, within Psest_3932at 4104.658 kb on + strand, within Psest_3932at 4104.659 kb on - strand, within Psest_3932at 4104.659 kb on - strand, within Psest_3932at 4104.659 kb on - strand, within Psest_3932at 4104.659 kb on - strand, within Psest_3932

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml
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4,101,926 + Psest_3930 0.11 -1.5
4,101,926 + Psest_3930 0.11 -1.0
4,101,926 + Psest_3930 0.11 +0.3
4,101,926 + Psest_3930 0.11 +0.7
4,101,926 + Psest_3930 0.11 +0.6
4,101,926 + Psest_3930 0.11 -0.3
4,101,927 - Psest_3930 0.11 +0.0
4,101,927 - Psest_3930 0.11 -0.3
4,101,927 - Psest_3930 0.11 -0.3
4,101,927 - Psest_3930 0.11 -0.8
4,101,927 - Psest_3930 0.11 +0.3
4,101,927 - Psest_3930 0.11 +0.0
4,101,927 - Psest_3930 0.11 -1.1
4,101,927 - Psest_3930 0.11 +1.0
4,101,927 - Psest_3930 0.11 +4.0
4,101,927 - Psest_3930 0.11 -1.1
4,101,927 - Psest_3930 0.11 +0.3
4,101,927 - Psest_3930 0.11 +1.7
4,101,927 - Psest_3930 0.11 -0.2
4,101,927 - Psest_3930 0.11 +0.1
4,101,932 + Psest_3930 0.12 -0.5
4,101,932 + Psest_3930 0.12 -0.7
4,101,932 + Psest_3930 0.12 -0.1
4,101,932 + Psest_3930 0.12 +0.0
4,101,932 + Psest_3930 0.12 -0.1
4,101,932 + Psest_3930 0.12 -0.6
4,101,932 + Psest_3930 0.12 +0.2
4,101,932 + Psest_3930 0.12 +0.3
4,101,932 + Psest_3930 0.12 -1.0
4,101,932 + Psest_3930 0.12 +0.4
4,101,932 + Psest_3930 0.12 -0.0
4,101,933 - Psest_3930 0.12 -0.3
4,101,933 - Psest_3930 0.12 -1.4
4,101,933 - Psest_3930 0.12 -0.3
4,101,933 - Psest_3930 0.12 -0.1
4,101,933 - Psest_3930 0.12 +0.7
4,101,933 - Psest_3930 0.12 +0.1
4,101,933 - Psest_3930 0.12 -0.9
4,101,933 - Psest_3930 0.12 +0.0
4,101,933 - Psest_3930 0.12 +0.4
4,101,933 - Psest_3930 0.12 -0.1
4,101,933 - Psest_3930 0.12 +0.5
4,101,933 - Psest_3930 0.12 -1.6
4,101,933 - Psest_3930 0.12 +0.1
4,101,933 - Psest_3930 0.12 -0.7
4,101,934 + Psest_3930 0.12 -0.5
4,101,934 + Psest_3930 0.12 +0.8
4,101,935 - Psest_3930 0.12 -0.5
4,101,936 + Psest_3930 0.13 -0.3
4,101,936 + Psest_3930 0.13 -1.5
4,101,936 + Psest_3930 0.13 -0.3
4,101,936 + Psest_3930 0.13 -0.0
4,101,936 + Psest_3930 0.13 +0.4
4,101,936 + Psest_3930 0.13 -0.9
4,101,936 + Psest_3930 0.13 +0.7
4,101,936 + Psest_3930 0.13 +0.1
4,101,936 + Psest_3930 0.13 -0.0
4,101,936 + Psest_3930 0.13 +0.1
4,101,936 + Psest_3930 0.13 +0.5
4,101,936 + Psest_3930 0.13 +0.8
4,101,936 + Psest_3930 0.13 +1.0
4,101,936 + Psest_3930 0.13 -0.3
4,101,936 + Psest_3930 0.13 -0.0
4,101,936 + Psest_3930 0.13 +0.4
4,101,936 + Psest_3930 0.13 -0.8
4,101,936 + Psest_3930 0.13 -1.5
4,101,936 + Psest_3930 0.13 -1.4
4,101,936 + Psest_3930 0.13 -0.4
4,101,936 + Psest_3930 0.13 -0.2
4,101,936 + Psest_3930 0.13 -1.0
4,101,936 + Psest_3930 0.13 +0.2
4,101,936 + Psest_3930 0.13 +0.3
4,101,936 + Psest_3930 0.13 +0.4
4,101,936 + Psest_3930 0.13 -0.5
4,101,936 + Psest_3930 0.13 -0.6
4,101,937 - Psest_3930 0.13 -0.1
4,101,937 - Psest_3930 0.13 -0.2
4,101,937 - Psest_3930 0.13 +0.2
4,101,937 - Psest_3930 0.13 +0.2
4,101,937 - Psest_3930 0.13 +0.4
4,101,937 - Psest_3930 0.13 -0.1
4,101,937 - Psest_3930 0.13 -0.5
4,101,937 - Psest_3930 0.13 -1.1
4,101,937 - Psest_3930 0.13 -0.2
4,101,937 - Psest_3930 0.13 +1.5
4,101,937 - Psest_3930 0.13 +0.0
4,101,937 - Psest_3930 0.13 -0.8
4,101,937 - Psest_3930 0.13 +0.2
4,101,937 - Psest_3930 0.13 +0.5
4,101,937 - Psest_3930 0.13 +0.4
4,101,937 - Psest_3930 0.13 +0.5
4,101,937 - Psest_3930 0.13 -1.0
4,101,937 - Psest_3930 0.13 +0.2
4,101,937 - Psest_3930 0.13 -0.7
4,101,937 - Psest_3930 0.13 -0.2
4,101,937 - Psest_3930 0.13 -0.0
4,101,937 - Psest_3930 0.13 -0.4
4,101,937 - Psest_3930 0.13 -2.3
4,101,937 - Psest_3930 0.13 -0.1
4,101,937 - Psest_3930 0.13 +1.0
4,101,937 - Psest_3930 0.13 -0.5
4,101,937 - Psest_3930 0.13 +1.0
4,101,937 - Psest_3930 0.13 +0.1
4,101,937 - Psest_3930 0.13 +0.2
4,101,937 - Psest_3930 0.13 -0.9
4,101,937 - Psest_3930 0.13 -0.1
4,101,937 - Psest_3930 0.13 -0.4
4,101,937 - Psest_3930 0.13 -0.0
4,101,937 - Psest_3930 0.13 -0.8
4,101,937 - Psest_3930 0.13 +0.1
4,101,937 - Psest_3930 0.13 +0.2
4,101,937 - Psest_3930 0.13 +1.6
4,101,937 - Psest_3930 0.13 -0.7
4,102,089 - Psest_3930 0.37 +0.2
4,102,157 - Psest_3930 0.48 -1.0
4,102,196 + Psest_3930 0.54 +0.2
4,102,196 + Psest_3930 0.54 +0.9
4,102,409 + Psest_3930 0.88 -0.7
4,102,409 + Psest_3930 0.88 +0.0
4,102,409 + Psest_3930 0.88 -0.1
4,102,482 + -0.6
4,102,482 + -0.2
4,102,482 + -0.7
4,102,482 + +0.2
4,102,482 + -1.3
4,102,483 - -1.9
4,102,483 - -0.3
4,102,483 - +1.0
4,102,483 - +0.4
4,102,740 + -0.1
4,102,740 + -1.5
4,102,740 + -0.5
4,102,741 - -0.2
4,102,741 - -0.4
4,102,741 - +0.1
4,102,741 - +0.6
4,102,741 - -2.2
4,102,741 - -0.8
4,102,741 - -0.3
4,102,741 - -0.2
4,102,907 + Psest_3931 0.23 -0.0
4,102,932 + Psest_3931 0.25 -0.0
4,102,984 + Psest_3931 0.30 -1.4
4,102,984 + Psest_3931 0.30 +0.3
4,102,984 + Psest_3931 0.30 -0.5
4,102,985 - Psest_3931 0.30 -1.0
4,102,985 - Psest_3931 0.30 -1.5
4,102,985 - Psest_3931 0.30 -2.4
4,103,393 + Psest_3931 0.68 -2.4
4,103,393 + Psest_3931 0.68 -1.4
4,103,393 + Psest_3931 0.68 -0.9
4,103,708 - -1.1
4,104,018 - Psest_3932 0.20 -0.2
4,104,039 - Psest_3932 0.21 -0.3
4,104,039 - Psest_3932 0.21 -0.6
4,104,039 - Psest_3932 0.21 -0.5
4,104,501 + Psest_3932 0.53 -1.4
4,104,521 + Psest_3932 0.55 +0.0
4,104,658 + Psest_3932 0.64 +0.3
4,104,658 + Psest_3932 0.64 -1.8
4,104,659 - Psest_3932 0.64 -1.3
4,104,659 - Psest_3932 0.64 +0.5
4,104,659 - Psest_3932 0.64 +0.0
4,104,659 - Psest_3932 0.64 -0.0

Or see this region's nucleotide sequence