Experiment: Def Cisplatin 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3864 and Psest_3865 are separated by 33 nucleotides Psest_3865 and Psest_3866 are separated by 20 nucleotides Psest_3866 and Psest_3867 are separated by 164 nucleotides Psest_3867 and Psest_3868 are separated by 98 nucleotides
Psest_3864: Psest_3864 - Histidinol-phosphatase (EC:3.1.3.15) (from data) , at 4,036,172 to 4,036,825
_3864
Psest_3865: Psest_3865 - Predicted integral membrane protein (DUF2269)., at 4,036,859 to 4,037,287
_3865
Psest_3866: Psest_3866 - threonine ammonia-lyase, biosynthetic, long form, at 4,037,308 to 4,038,822
_3866
Psest_3867: Psest_3867 - ribose 5-phosphate isomerase, at 4,038,987 to 4,039,658
_3867
Psest_3868: Psest_3868 - Uncharacterized conserved protein, at 4,039,757 to 4,040,104
_3868
Position (kb)
4037
4038
4039 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 4036.310 kb on + strand, within Psest_3864 at 4036.310 kb on + strand, within Psest_3864 at 4036.310 kb on + strand, within Psest_3864 at 4036.310 kb on + strand, within Psest_3864 at 4036.311 kb on - strand, within Psest_3864 at 4036.596 kb on - strand, within Psest_3864 at 4036.694 kb on + strand, within Psest_3864 at 4036.694 kb on + strand, within Psest_3864 at 4036.694 kb on + strand, within Psest_3864 at 4036.694 kb on + strand, within Psest_3864 at 4036.694 kb on + strand, within Psest_3864 at 4036.694 kb on + strand, within Psest_3864 at 4036.694 kb on + strand, within Psest_3864 at 4036.694 kb on + strand, within Psest_3864 at 4036.694 kb on + strand, within Psest_3864 at 4036.694 kb on + strand, within Psest_3864 at 4036.694 kb on + strand, within Psest_3864 at 4036.694 kb on + strand, within Psest_3864 at 4036.694 kb on + strand, within Psest_3864 at 4036.695 kb on - strand, within Psest_3864 at 4036.695 kb on - strand, within Psest_3864 at 4036.695 kb on - strand, within Psest_3864 at 4036.695 kb on - strand, within Psest_3864 at 4036.695 kb on - strand, within Psest_3864 at 4036.695 kb on - strand, within Psest_3864 at 4036.695 kb on - strand, within Psest_3864 at 4036.695 kb on - strand, within Psest_3864 at 4036.695 kb on - strand, within Psest_3864 at 4036.695 kb on - strand, within Psest_3864 at 4036.695 kb on - strand, within Psest_3864 at 4036.695 kb on - strand, within Psest_3864 at 4036.700 kb on + strand, within Psest_3864 at 4036.700 kb on + strand, within Psest_3864 at 4036.700 kb on + strand, within Psest_3864 at 4036.700 kb on + strand, within Psest_3864 at 4036.700 kb on + strand, within Psest_3864 at 4036.700 kb on + strand, within Psest_3864 at 4036.700 kb on + strand, within Psest_3864 at 4036.700 kb on + strand, within Psest_3864 at 4036.700 kb on + strand, within Psest_3864 at 4036.700 kb on + strand, within Psest_3864 at 4036.701 kb on - strand, within Psest_3864 at 4036.701 kb on - strand, within Psest_3864 at 4036.701 kb on - strand, within Psest_3864 at 4036.701 kb on - strand, within Psest_3864 at 4036.923 kb on + strand, within Psest_3865 at 4036.923 kb on + strand, within Psest_3865 at 4036.924 kb on - strand, within Psest_3865 at 4036.924 kb on - strand, within Psest_3865 at 4036.924 kb on - strand, within Psest_3865 at 4036.924 kb on - strand, within Psest_3865 at 4036.928 kb on - strand, within Psest_3865 at 4036.937 kb on - strand, within Psest_3865 at 4036.937 kb on - strand, within Psest_3865 at 4037.268 kb on - strand at 4037.268 kb on - strand at 4037.278 kb on - strand at 4037.278 kb on - strand at 4037.278 kb on - strand at 4037.278 kb on - strand at 4037.278 kb on - strand at 4037.299 kb on + strand at 4037.299 kb on + strand at 4037.299 kb on + strand at 4037.300 kb on - strand at 4037.300 kb on - strand at 4037.300 kb on - strand at 4037.327 kb on + strand at 4037.327 kb on + strand at 4037.327 kb on + strand at 4037.328 kb on - strand at 4037.328 kb on - strand at 4037.328 kb on - strand at 4037.428 kb on + strand at 4037.742 kb on - strand, within Psest_3866 at 4037.957 kb on + strand, within Psest_3866 at 4037.957 kb on + strand, within Psest_3866 at 4037.957 kb on + strand, within Psest_3866 at 4037.957 kb on + strand, within Psest_3866 at 4037.957 kb on + strand, within Psest_3866 at 4037.958 kb on - strand, within Psest_3866 at 4037.958 kb on - strand, within Psest_3866 at 4038.020 kb on + strand, within Psest_3866 at 4038.020 kb on + strand, within Psest_3866 at 4038.020 kb on + strand, within Psest_3866 at 4038.020 kb on + strand, within Psest_3866 at 4038.021 kb on - strand, within Psest_3866 at 4038.024 kb on + strand, within Psest_3866 at 4038.024 kb on + strand, within Psest_3866 at 4038.024 kb on + strand, within Psest_3866 at 4038.024 kb on + strand, within Psest_3866 at 4038.025 kb on - strand, within Psest_3866 at 4038.025 kb on - strand, within Psest_3866 at 4038.025 kb on - strand, within Psest_3866 at 4038.080 kb on + strand, within Psest_3866 at 4038.080 kb on + strand, within Psest_3866 at 4038.080 kb on + strand, within Psest_3866 at 4038.080 kb on + strand, within Psest_3866 at 4038.081 kb on - strand, within Psest_3866 at 4038.081 kb on - strand, within Psest_3866 at 4038.248 kb on + strand, within Psest_3866 at 4038.248 kb on + strand, within Psest_3866 at 4038.248 kb on + strand, within Psest_3866 at 4038.248 kb on + strand, within Psest_3866 at 4038.249 kb on - strand, within Psest_3866 at 4038.249 kb on - strand, within Psest_3866 at 4038.249 kb on - strand, within Psest_3866 at 4038.249 kb on - strand, within Psest_3866 at 4038.249 kb on - strand, within Psest_3866 at 4038.249 kb on - strand, within Psest_3866 at 4038.249 kb on - strand, within Psest_3866 at 4038.249 kb on - strand, within Psest_3866 at 4038.249 kb on - strand, within Psest_3866 at 4038.249 kb on - strand, within Psest_3866 at 4038.249 kb on - strand, within Psest_3866 at 4038.257 kb on + strand, within Psest_3866 at 4038.396 kb on + strand, within Psest_3866 at 4038.397 kb on - strand, within Psest_3866 at 4038.397 kb on - strand, within Psest_3866 at 4038.398 kb on + strand, within Psest_3866 at 4038.398 kb on + strand, within Psest_3866 at 4038.398 kb on + strand, within Psest_3866 at 4038.398 kb on + strand, within Psest_3866 at 4038.398 kb on + strand, within Psest_3866 at 4038.398 kb on + strand, within Psest_3866 at 4038.398 kb on + strand, within Psest_3866 at 4038.398 kb on + strand, within Psest_3866 at 4038.398 kb on + strand, within Psest_3866 at 4038.399 kb on - strand, within Psest_3866 at 4038.399 kb on - strand, within Psest_3866 at 4038.399 kb on - strand, within Psest_3866 at 4038.399 kb on - strand, within Psest_3866 at 4038.399 kb on - strand, within Psest_3866 at 4038.399 kb on - strand, within Psest_3866 at 4038.399 kb on - strand, within Psest_3866 at 4038.399 kb on - strand, within Psest_3866 at 4038.399 kb on - strand, within Psest_3866 at 4038.399 kb on - strand, within Psest_3866 at 4038.399 kb on - strand, within Psest_3866 at 4038.404 kb on + strand, within Psest_3866 at 4038.405 kb on - strand, within Psest_3866 at 4038.405 kb on - strand, within Psest_3866 at 4038.405 kb on - strand, within Psest_3866 at 4038.405 kb on - strand, within Psest_3866 at 4038.657 kb on - strand, within Psest_3866 at 4038.657 kb on - strand, within Psest_3866 at 4038.657 kb on - strand, within Psest_3866 at 4038.657 kb on - strand, within Psest_3866 at 4038.779 kb on + strand at 4038.809 kb on + strand at 4038.809 kb on + strand at 4038.809 kb on + strand at 4038.810 kb on - strand at 4038.950 kb on - strand at 4038.950 kb on - strand at 4038.950 kb on - strand at 4038.951 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml remove 4,036,310 + Psest_3864 0.21 -3.4 4,036,310 + Psest_3864 0.21 -0.8 4,036,310 + Psest_3864 0.21 -1.8 4,036,310 + Psest_3864 0.21 -0.6 4,036,311 - Psest_3864 0.21 -1.6 4,036,596 - Psest_3864 0.65 -3.0 4,036,694 + Psest_3864 0.80 -2.0 4,036,694 + Psest_3864 0.80 -0.6 4,036,694 + Psest_3864 0.80 -4.2 4,036,694 + Psest_3864 0.80 -2.9 4,036,694 + Psest_3864 0.80 -3.8 4,036,694 + Psest_3864 0.80 -4.3 4,036,694 + Psest_3864 0.80 -1.6 4,036,694 + Psest_3864 0.80 -3.1 4,036,694 + Psest_3864 0.80 -2.7 4,036,694 + Psest_3864 0.80 -1.3 4,036,694 + Psest_3864 0.80 -2.0 4,036,694 + Psest_3864 0.80 -2.8 4,036,694 + Psest_3864 0.80 -4.0 4,036,695 - Psest_3864 0.80 -3.6 4,036,695 - Psest_3864 0.80 -4.1 4,036,695 - Psest_3864 0.80 -2.1 4,036,695 - Psest_3864 0.80 -4.6 4,036,695 - Psest_3864 0.80 -2.0 4,036,695 - Psest_3864 0.80 -4.4 4,036,695 - Psest_3864 0.80 -2.0 4,036,695 - Psest_3864 0.80 -5.1 4,036,695 - Psest_3864 0.80 -3.2 4,036,695 - Psest_3864 0.80 -0.3 4,036,695 - Psest_3864 0.80 -2.6 4,036,695 - Psest_3864 0.80 -1.6 4,036,700 + Psest_3864 0.81 -4.4 4,036,700 + Psest_3864 0.81 -3.4 4,036,700 + Psest_3864 0.81 -1.3 4,036,700 + Psest_3864 0.81 -3.1 4,036,700 + Psest_3864 0.81 -5.3 4,036,700 + Psest_3864 0.81 -4.1 4,036,700 + Psest_3864 0.81 -2.7 4,036,700 + Psest_3864 0.81 -2.7 4,036,700 + Psest_3864 0.81 -3.8 4,036,700 + Psest_3864 0.81 -3.4 4,036,701 - Psest_3864 0.81 -2.5 4,036,701 - Psest_3864 0.81 -3.7 4,036,701 - Psest_3864 0.81 -2.3 4,036,701 - Psest_3864 0.81 -4.2 4,036,923 + Psest_3865 0.15 -2.2 4,036,923 + Psest_3865 0.15 +0.4 4,036,924 - Psest_3865 0.15 -0.3 4,036,924 - Psest_3865 0.15 -0.3 4,036,924 - Psest_3865 0.15 +0.4 4,036,924 - Psest_3865 0.15 -1.9 4,036,928 - Psest_3865 0.16 +0.0 4,036,937 - Psest_3865 0.18 -0.6 4,036,937 - Psest_3865 0.18 -0.1 4,037,268 - -1.8 4,037,268 - -1.2 4,037,278 - -0.4 4,037,278 - +0.0 4,037,278 - -0.6 4,037,278 - +0.2 4,037,278 - -2.4 4,037,299 + -0.1 4,037,299 + -0.6 4,037,299 + +0.7 4,037,300 - +0.3 4,037,300 - +0.2 4,037,300 - -0.1 4,037,327 + -2.1 4,037,327 + -1.8 4,037,327 + -1.3 4,037,328 - -5.0 4,037,328 - -3.6 4,037,328 - -2.7 4,037,428 + -3.7 4,037,742 - Psest_3866 0.29 -5.3 4,037,957 + Psest_3866 0.43 -2.7 4,037,957 + Psest_3866 0.43 -3.7 4,037,957 + Psest_3866 0.43 -2.3 4,037,957 + Psest_3866 0.43 -2.1 4,037,957 + Psest_3866 0.43 -4.0 4,037,958 - Psest_3866 0.43 -4.0 4,037,958 - Psest_3866 0.43 -3.8 4,038,020 + Psest_3866 0.47 -3.3 4,038,020 + Psest_3866 0.47 -4.5 4,038,020 + Psest_3866 0.47 -2.4 4,038,020 + Psest_3866 0.47 -2.3 4,038,021 - Psest_3866 0.47 +2.0 4,038,024 + Psest_3866 0.47 -5.8 4,038,024 + Psest_3866 0.47 -3.4 4,038,024 + Psest_3866 0.47 -3.9 4,038,024 + Psest_3866 0.47 -4.5 4,038,025 - Psest_3866 0.47 -2.6 4,038,025 - Psest_3866 0.47 -2.7 4,038,025 - Psest_3866 0.47 -3.7 4,038,080 + Psest_3866 0.51 -3.7 4,038,080 + Psest_3866 0.51 -4.8 4,038,080 + Psest_3866 0.51 -1.0 4,038,080 + Psest_3866 0.51 -3.4 4,038,081 - Psest_3866 0.51 -4.7 4,038,081 - Psest_3866 0.51 -3.3 4,038,248 + Psest_3866 0.62 -1.0 4,038,248 + Psest_3866 0.62 -5.3 4,038,248 + Psest_3866 0.62 -2.8 4,038,248 + Psest_3866 0.62 -2.3 4,038,249 - Psest_3866 0.62 -3.1 4,038,249 - Psest_3866 0.62 -3.1 4,038,249 - Psest_3866 0.62 -4.5 4,038,249 - Psest_3866 0.62 -2.0 4,038,249 - Psest_3866 0.62 -2.6 4,038,249 - Psest_3866 0.62 -5.3 4,038,249 - Psest_3866 0.62 -4.1 4,038,249 - Psest_3866 0.62 -2.8 4,038,249 - Psest_3866 0.62 -3.2 4,038,249 - Psest_3866 0.62 -2.4 4,038,249 - Psest_3866 0.62 -4.1 4,038,257 + Psest_3866 0.63 -2.1 4,038,396 + Psest_3866 0.72 -2.4 4,038,397 - Psest_3866 0.72 -4.6 4,038,397 - Psest_3866 0.72 -2.3 4,038,398 + Psest_3866 0.72 -3.9 4,038,398 + Psest_3866 0.72 -3.6 4,038,398 + Psest_3866 0.72 -4.7 4,038,398 + Psest_3866 0.72 -2.9 4,038,398 + Psest_3866 0.72 -2.7 4,038,398 + Psest_3866 0.72 -6.6 4,038,398 + Psest_3866 0.72 -2.4 4,038,398 + Psest_3866 0.72 -2.6 4,038,398 + Psest_3866 0.72 -5.1 4,038,399 - Psest_3866 0.72 -3.1 4,038,399 - Psest_3866 0.72 -1.6 4,038,399 - Psest_3866 0.72 -2.7 4,038,399 - Psest_3866 0.72 -5.4 4,038,399 - Psest_3866 0.72 -3.4 4,038,399 - Psest_3866 0.72 -3.9 4,038,399 - Psest_3866 0.72 -3.1 4,038,399 - Psest_3866 0.72 -2.0 4,038,399 - Psest_3866 0.72 -3.5 4,038,399 - Psest_3866 0.72 -3.7 4,038,399 - Psest_3866 0.72 -3.8 4,038,404 + Psest_3866 0.72 -2.4 4,038,405 - Psest_3866 0.72 -1.8 4,038,405 - Psest_3866 0.72 -2.1 4,038,405 - Psest_3866 0.72 -2.3 4,038,405 - Psest_3866 0.72 -1.8 4,038,657 - Psest_3866 0.89 -4.3 4,038,657 - Psest_3866 0.89 -1.3 4,038,657 - Psest_3866 0.89 -2.4 4,038,657 - Psest_3866 0.89 -3.6 4,038,779 + -1.8 4,038,809 + -2.3 4,038,809 + -3.9 4,038,809 + -4.2 4,038,810 - -2.0 4,038,950 - -1.8 4,038,950 - -0.1 4,038,950 - -0.6 4,038,951 + -1.7
Or see this region's nucleotide sequence