Experiment: Def Cisplatin 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3842 and Psest_3843 are separated by 108 nucleotides Psest_3843 and Psest_3844 are separated by 43 nucleotides
Psest_3842: Psest_3842 - Transcriptional regulators, at 4,014,001 to 4,014,774
_3842
Psest_3843: Psest_3843 - 4-hydroxybenzoate synthetase (chorismate lyase), at 4,014,883 to 4,015,437
_3843
Psest_3844: Psest_3844 - 4-hydroxybenzoate polyprenyl transferase, proteobacterial, at 4,015,481 to 4,016,374
_3844
Position (kb)
4014
4015
4016 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4013.942 kb on - strand at 4014.173 kb on + strand, within Psest_3842 at 4014.296 kb on - strand, within Psest_3842 at 4014.383 kb on + strand, within Psest_3842 at 4014.577 kb on + strand, within Psest_3842 at 4014.684 kb on + strand, within Psest_3842 at 4014.803 kb on + strand at 4014.804 kb on - strand at 4014.861 kb on + strand at 4014.862 kb on - strand at 4014.862 kb on - strand at 4014.973 kb on + strand, within Psest_3843 at 4014.973 kb on + strand, within Psest_3843 at 4014.974 kb on - strand, within Psest_3843 at 4014.974 kb on - strand, within Psest_3843 at 4014.974 kb on - strand, within Psest_3843 at 4014.974 kb on - strand, within Psest_3843 at 4015.129 kb on + strand, within Psest_3843 at 4015.129 kb on + strand, within Psest_3843 at 4015.129 kb on + strand, within Psest_3843 at 4015.129 kb on + strand, within Psest_3843 at 4015.129 kb on + strand, within Psest_3843 at 4015.129 kb on + strand, within Psest_3843 at 4015.129 kb on + strand, within Psest_3843 at 4015.129 kb on + strand, within Psest_3843 at 4015.129 kb on + strand, within Psest_3843 at 4015.129 kb on + strand, within Psest_3843 at 4015.129 kb on + strand, within Psest_3843 at 4015.129 kb on + strand, within Psest_3843 at 4015.129 kb on + strand, within Psest_3843 at 4015.130 kb on - strand, within Psest_3843 at 4015.130 kb on - strand, within Psest_3843 at 4015.130 kb on - strand, within Psest_3843 at 4015.130 kb on - strand, within Psest_3843 at 4015.130 kb on - strand, within Psest_3843 at 4015.130 kb on - strand, within Psest_3843 at 4015.130 kb on - strand, within Psest_3843 at 4015.130 kb on - strand, within Psest_3843 at 4015.130 kb on - strand, within Psest_3843 at 4015.130 kb on - strand, within Psest_3843 at 4015.130 kb on - strand, within Psest_3843 at 4015.130 kb on - strand, within Psest_3843 at 4015.130 kb on - strand, within Psest_3843 at 4015.394 kb on + strand at 4015.394 kb on + strand at 4015.394 kb on + strand at 4015.394 kb on + strand at 4015.394 kb on + strand at 4015.394 kb on + strand at 4015.394 kb on + strand at 4015.395 kb on - strand at 4015.395 kb on - strand at 4015.395 kb on - strand at 4015.395 kb on - strand at 4015.395 kb on - strand at 4015.484 kb on + strand at 4015.484 kb on + strand at 4015.484 kb on + strand at 4015.484 kb on + strand at 4015.484 kb on + strand at 4016.372 kb on + strand at 4016.392 kb on + strand at 4016.392 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml remove 4,013,942 - +1.1 4,014,173 + Psest_3842 0.22 -1.4 4,014,296 - Psest_3842 0.38 +0.2 4,014,383 + Psest_3842 0.49 +0.8 4,014,577 + Psest_3842 0.74 -0.1 4,014,684 + Psest_3842 0.88 -0.6 4,014,803 + -1.1 4,014,804 - +1.1 4,014,861 + +0.5 4,014,862 - +2.4 4,014,862 - +0.1 4,014,973 + Psest_3843 0.16 -1.5 4,014,973 + Psest_3843 0.16 -2.8 4,014,974 - Psest_3843 0.16 +1.0 4,014,974 - Psest_3843 0.16 +1.0 4,014,974 - Psest_3843 0.16 +0.0 4,014,974 - Psest_3843 0.16 -1.7 4,015,129 + Psest_3843 0.44 -0.9 4,015,129 + Psest_3843 0.44 -0.5 4,015,129 + Psest_3843 0.44 -0.5 4,015,129 + Psest_3843 0.44 -1.1 4,015,129 + Psest_3843 0.44 -0.3 4,015,129 + Psest_3843 0.44 -1.2 4,015,129 + Psest_3843 0.44 +0.0 4,015,129 + Psest_3843 0.44 -0.4 4,015,129 + Psest_3843 0.44 -0.6 4,015,129 + Psest_3843 0.44 -0.3 4,015,129 + Psest_3843 0.44 -0.9 4,015,129 + Psest_3843 0.44 -1.1 4,015,129 + Psest_3843 0.44 -0.3 4,015,130 - Psest_3843 0.45 +0.0 4,015,130 - Psest_3843 0.45 -0.1 4,015,130 - Psest_3843 0.45 -2.0 4,015,130 - Psest_3843 0.45 -0.5 4,015,130 - Psest_3843 0.45 +0.4 4,015,130 - Psest_3843 0.45 -2.4 4,015,130 - Psest_3843 0.45 -0.5 4,015,130 - Psest_3843 0.45 -0.5 4,015,130 - Psest_3843 0.45 -1.5 4,015,130 - Psest_3843 0.45 -1.1 4,015,130 - Psest_3843 0.45 -1.9 4,015,130 - Psest_3843 0.45 +0.0 4,015,130 - Psest_3843 0.45 -2.4 4,015,394 + -1.0 4,015,394 + -1.8 4,015,394 + -1.8 4,015,394 + -0.9 4,015,394 + -0.5 4,015,394 + -0.1 4,015,394 + -0.3 4,015,395 - -0.3 4,015,395 - -1.0 4,015,395 - -1.2 4,015,395 - -1.0 4,015,395 - -0.3 4,015,484 + -0.9 4,015,484 + +0.0 4,015,484 + +0.4 4,015,484 + -1.8 4,015,484 + +0.2 4,016,372 + +0.2 4,016,392 + +0.2 4,016,392 + -0.6
Or see this region's nucleotide sequence