Experiment: Def Cisplatin 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3731 and Psest_3732 are separated by 105 nucleotides Psest_3732 and Psest_3733 are separated by 19 nucleotides
Psest_3731: Psest_3731 - exopolyphosphatase, at 3,902,546 to 3,904,048
_3731
Psest_3732: Psest_3732 - polyphosphate kinase 1, at 3,904,154 to 3,906,370
_3732
Psest_3733: Psest_3733 - Delta-aminolevulinic acid dehydratase, at 3,906,390 to 3,907,403
_3733
Position (kb)
3904
3905
3906
3907 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3903.184 kb on + strand, within Psest_3731 at 3903.184 kb on + strand, within Psest_3731 at 3903.184 kb on + strand, within Psest_3731 at 3903.184 kb on + strand, within Psest_3731 at 3903.184 kb on + strand, within Psest_3731 at 3903.184 kb on + strand, within Psest_3731 at 3903.185 kb on - strand, within Psest_3731 at 3903.185 kb on - strand, within Psest_3731 at 3903.185 kb on - strand, within Psest_3731 at 3903.185 kb on - strand, within Psest_3731 at 3903.185 kb on - strand, within Psest_3731 at 3903.185 kb on - strand, within Psest_3731 at 3903.355 kb on - strand, within Psest_3731 at 3903.452 kb on + strand, within Psest_3731 at 3903.453 kb on - strand, within Psest_3731 at 3903.521 kb on + strand, within Psest_3731 at 3903.677 kb on + strand, within Psest_3731 at 3903.677 kb on + strand, within Psest_3731 at 3903.677 kb on + strand, within Psest_3731 at 3903.677 kb on + strand, within Psest_3731 at 3903.678 kb on - strand, within Psest_3731 at 3903.678 kb on - strand, within Psest_3731 at 3903.678 kb on - strand, within Psest_3731 at 3903.678 kb on - strand, within Psest_3731 at 3903.684 kb on - strand, within Psest_3731 at 3903.788 kb on - strand, within Psest_3731 at 3903.788 kb on - strand, within Psest_3731 at 3903.799 kb on + strand, within Psest_3731 at 3903.799 kb on + strand, within Psest_3731 at 3903.799 kb on + strand, within Psest_3731 at 3903.800 kb on - strand, within Psest_3731 at 3903.909 kb on + strand at 3903.910 kb on - strand at 3904.029 kb on - strand at 3904.248 kb on + strand at 3904.407 kb on + strand, within Psest_3732 at 3904.407 kb on + strand, within Psest_3732 at 3904.408 kb on - strand, within Psest_3732 at 3904.437 kb on + strand, within Psest_3732 at 3904.437 kb on + strand, within Psest_3732 at 3904.438 kb on - strand, within Psest_3732 at 3904.578 kb on + strand, within Psest_3732 at 3904.579 kb on - strand, within Psest_3732 at 3904.579 kb on - strand, within Psest_3732 at 3904.579 kb on - strand, within Psest_3732 at 3904.630 kb on + strand, within Psest_3732 at 3904.631 kb on - strand, within Psest_3732 at 3904.816 kb on - strand, within Psest_3732 at 3904.824 kb on + strand, within Psest_3732 at 3904.824 kb on + strand, within Psest_3732 at 3904.824 kb on + strand, within Psest_3732 at 3904.848 kb on + strand, within Psest_3732 at 3904.849 kb on - strand, within Psest_3732 at 3904.947 kb on + strand, within Psest_3732 at 3904.947 kb on + strand, within Psest_3732 at 3904.948 kb on - strand, within Psest_3732 at 3904.948 kb on - strand, within Psest_3732 at 3904.948 kb on - strand, within Psest_3732 at 3905.106 kb on + strand, within Psest_3732 at 3905.283 kb on + strand, within Psest_3732 at 3905.283 kb on + strand, within Psest_3732 at 3905.284 kb on - strand, within Psest_3732 at 3905.284 kb on - strand, within Psest_3732 at 3905.284 kb on - strand, within Psest_3732 at 3905.358 kb on + strand, within Psest_3732 at 3905.841 kb on + strand, within Psest_3732 at 3906.207 kb on + strand at 3906.207 kb on + strand at 3906.207 kb on + strand at 3906.207 kb on + strand at 3906.208 kb on - strand at 3906.208 kb on - strand at 3906.208 kb on - strand at 3906.208 kb on - strand at 3906.208 kb on - strand at 3906.405 kb on + strand at 3906.405 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml remove 3,903,184 + Psest_3731 0.42 -0.2 3,903,184 + Psest_3731 0.42 +0.0 3,903,184 + Psest_3731 0.42 -0.3 3,903,184 + Psest_3731 0.42 -0.3 3,903,184 + Psest_3731 0.42 +0.3 3,903,184 + Psest_3731 0.42 +0.6 3,903,185 - Psest_3731 0.43 +0.6 3,903,185 - Psest_3731 0.43 +1.0 3,903,185 - Psest_3731 0.43 +0.2 3,903,185 - Psest_3731 0.43 +0.6 3,903,185 - Psest_3731 0.43 -1.0 3,903,185 - Psest_3731 0.43 -1.0 3,903,355 - Psest_3731 0.54 +0.6 3,903,452 + Psest_3731 0.60 +0.4 3,903,453 - Psest_3731 0.60 -0.8 3,903,521 + Psest_3731 0.65 -0.7 3,903,677 + Psest_3731 0.75 -1.1 3,903,677 + Psest_3731 0.75 +0.6 3,903,677 + Psest_3731 0.75 +0.3 3,903,677 + Psest_3731 0.75 -0.0 3,903,678 - Psest_3731 0.75 +0.2 3,903,678 - Psest_3731 0.75 +0.3 3,903,678 - Psest_3731 0.75 -0.1 3,903,678 - Psest_3731 0.75 +0.1 3,903,684 - Psest_3731 0.76 +1.9 3,903,788 - Psest_3731 0.83 -0.2 3,903,788 - Psest_3731 0.83 +0.2 3,903,799 + Psest_3731 0.83 -0.2 3,903,799 + Psest_3731 0.83 -0.0 3,903,799 + Psest_3731 0.83 -0.3 3,903,800 - Psest_3731 0.83 -0.1 3,903,909 + -0.1 3,903,910 - +0.2 3,904,029 - +0.9 3,904,248 + -0.8 3,904,407 + Psest_3732 0.11 +0.1 3,904,407 + Psest_3732 0.11 -1.6 3,904,408 - Psest_3732 0.11 -1.1 3,904,437 + Psest_3732 0.13 -0.7 3,904,437 + Psest_3732 0.13 -0.4 3,904,438 - Psest_3732 0.13 -1.1 3,904,578 + Psest_3732 0.19 -2.7 3,904,579 - Psest_3732 0.19 -1.6 3,904,579 - Psest_3732 0.19 -1.2 3,904,579 - Psest_3732 0.19 -0.4 3,904,630 + Psest_3732 0.21 +0.4 3,904,631 - Psest_3732 0.22 -1.7 3,904,816 - Psest_3732 0.30 -0.2 3,904,824 + Psest_3732 0.30 -1.2 3,904,824 + Psest_3732 0.30 -0.8 3,904,824 + Psest_3732 0.30 -2.2 3,904,848 + Psest_3732 0.31 +0.0 3,904,849 - Psest_3732 0.31 -0.6 3,904,947 + Psest_3732 0.36 -2.0 3,904,947 + Psest_3732 0.36 -0.8 3,904,948 - Psest_3732 0.36 -2.3 3,904,948 - Psest_3732 0.36 -1.0 3,904,948 - Psest_3732 0.36 -1.0 3,905,106 + Psest_3732 0.43 -2.0 3,905,283 + Psest_3732 0.51 -0.4 3,905,283 + Psest_3732 0.51 -0.7 3,905,284 - Psest_3732 0.51 -0.9 3,905,284 - Psest_3732 0.51 -1.2 3,905,284 - Psest_3732 0.51 -0.8 3,905,358 + Psest_3732 0.54 -1.1 3,905,841 + Psest_3732 0.76 +0.7 3,906,207 + -0.5 3,906,207 + -2.4 3,906,207 + -1.0 3,906,207 + +2.0 3,906,208 - -0.2 3,906,208 - -0.3 3,906,208 - -0.9 3,906,208 - -1.7 3,906,208 - -0.3 3,906,405 + -0.6 3,906,405 + +0.4
Or see this region's nucleotide sequence