Experiment: Def Cisplatin 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3677 and Psest_3678 are separated by 75 nucleotides Psest_3678 and Psest_3679 are separated by 14 nucleotides Psest_3679 and Psest_3680 are separated by 196 nucleotides Psest_3680 and Psest_3681 are separated by 138 nucleotides
Psest_3677: Psest_3677 - dihydroneopterin aldolase, at 3,841,887 to 3,842,240
_3677
Psest_3678: Psest_3678 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 3,842,316 to 3,842,885
_3678
Psest_3679: Psest_3679 - putative glycoprotease GCP, at 3,842,900 to 3,843,925
_3679
Psest_3680: Psest_3680 - ribosomal protein S21, at 3,844,122 to 3,844,337
_3680
Psest_3681: Psest_3681 - DNA primase, catalytic core, at 3,844,476 to 3,846,419
_3681
Position (kb)
3842
3843
3844 Strain fitness (log2 ratio)
-2
-1
0
1 at 3842.441 kb on + strand, within Psest_3678 at 3842.441 kb on + strand, within Psest_3678 at 3842.441 kb on + strand, within Psest_3678 at 3842.441 kb on + strand, within Psest_3678 at 3842.441 kb on + strand, within Psest_3678 at 3842.441 kb on + strand, within Psest_3678 at 3842.516 kb on - strand, within Psest_3678 at 3842.601 kb on + strand, within Psest_3678 at 3842.602 kb on - strand, within Psest_3678 at 3842.822 kb on + strand, within Psest_3678 at 3842.822 kb on + strand, within Psest_3678 at 3842.823 kb on - strand, within Psest_3678 at 3842.823 kb on - strand, within Psest_3678 at 3842.823 kb on - strand, within Psest_3678 at 3844.396 kb on + strand at 3844.461 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml remove 3,842,441 + Psest_3678 0.22 -0.8 3,842,441 + Psest_3678 0.22 -1.6 3,842,441 + Psest_3678 0.22 -1.1 3,842,441 + Psest_3678 0.22 -0.7 3,842,441 + Psest_3678 0.22 -1.2 3,842,441 + Psest_3678 0.22 -2.4 3,842,516 - Psest_3678 0.35 -2.3 3,842,601 + Psest_3678 0.50 +0.6 3,842,602 - Psest_3678 0.50 -1.3 3,842,822 + Psest_3678 0.89 -1.0 3,842,822 + Psest_3678 0.89 -1.6 3,842,823 - Psest_3678 0.89 -0.4 3,842,823 - Psest_3678 0.89 +0.7 3,842,823 - Psest_3678 0.89 -1.7 3,844,396 + +0.1 3,844,461 + +0.0
Or see this region's nucleotide sequence