Experiment: Def Cisplatin 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3645 and Psest_3646 are separated by 212 nucleotides Psest_3646 and Psest_3647 are separated by 45 nucleotides Psest_3647 and Psest_3648 overlap by 4 nucleotides
Psest_3645: Psest_3645 - Predicted redox protein, regulator of disulfide bond formation, at 3,806,163 to 3,806,585
_3645
Psest_3646: Psest_3646 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 3,806,798 to 3,807,442
_3646
Psest_3647: Psest_3647 - Indole-3-glycerol phosphate synthase, at 3,807,488 to 3,808,330
_3647
Psest_3648: Psest_3648 - anthranilate phosphoribosyltransferase, at 3,808,327 to 3,809,373
_3648
Position (kb)
3807
3808
3809 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3806.613 kb on + strand at 3806.614 kb on - strand at 3806.618 kb on + strand at 3806.619 kb on - strand at 3806.632 kb on - strand at 3806.632 kb on - strand at 3806.649 kb on + strand at 3806.649 kb on + strand at 3806.649 kb on + strand at 3806.649 kb on + strand at 3806.650 kb on - strand at 3806.722 kb on - strand at 3806.751 kb on + strand at 3806.751 kb on + strand at 3806.751 kb on + strand at 3806.751 kb on + strand at 3806.752 kb on - strand at 3806.752 kb on - strand at 3806.752 kb on - strand at 3806.752 kb on - strand at 3806.752 kb on - strand at 3806.752 kb on - strand at 3806.752 kb on - strand at 3806.752 kb on - strand at 3806.752 kb on - strand at 3806.752 kb on - strand at 3806.752 kb on - strand at 3806.753 kb on + strand at 3806.754 kb on - strand at 3806.754 kb on - strand at 3806.754 kb on - strand at 3806.754 kb on - strand at 3806.754 kb on - strand at 3806.759 kb on + strand at 3806.759 kb on + strand at 3806.770 kb on + strand at 3806.771 kb on - strand at 3806.778 kb on - strand at 3806.778 kb on - strand at 3806.778 kb on - strand at 3806.778 kb on - strand at 3806.778 kb on - strand at 3806.782 kb on - strand at 3806.802 kb on + strand at 3806.802 kb on + strand at 3806.802 kb on + strand at 3806.802 kb on + strand at 3806.802 kb on + strand at 3806.803 kb on - strand at 3806.803 kb on - strand at 3806.803 kb on - strand at 3806.803 kb on - strand at 3806.806 kb on + strand at 3806.806 kb on + strand at 3806.806 kb on + strand at 3806.806 kb on + strand at 3806.806 kb on + strand at 3806.806 kb on + strand at 3806.806 kb on + strand at 3806.807 kb on - strand at 3806.807 kb on - strand at 3806.807 kb on - strand at 3806.807 kb on - strand at 3806.807 kb on - strand at 3806.807 kb on - strand at 3806.807 kb on - strand at 3806.807 kb on - strand at 3806.807 kb on - strand at 3806.807 kb on - strand at 3806.807 kb on - strand at 3806.826 kb on + strand at 3806.826 kb on + strand at 3806.827 kb on - strand at 3806.861 kb on - strand at 3806.861 kb on - strand at 3806.870 kb on + strand, within Psest_3646 at 3806.894 kb on + strand, within Psest_3646 at 3806.895 kb on - strand, within Psest_3646 at 3806.953 kb on + strand, within Psest_3646 at 3806.990 kb on + strand, within Psest_3646 at 3807.107 kb on + strand, within Psest_3646 at 3807.107 kb on + strand, within Psest_3646 at 3807.107 kb on + strand, within Psest_3646 at 3807.108 kb on - strand, within Psest_3646 at 3807.108 kb on - strand, within Psest_3646 at 3807.108 kb on - strand, within Psest_3646 at 3807.401 kb on + strand at 3807.402 kb on - strand at 3807.540 kb on + strand at 3807.541 kb on - strand at 3807.541 kb on - strand at 3807.560 kb on + strand at 3807.610 kb on - strand, within Psest_3647 at 3807.620 kb on + strand, within Psest_3647 at 3807.621 kb on - strand, within Psest_3647 at 3807.737 kb on - strand, within Psest_3647 at 3807.869 kb on - strand, within Psest_3647 at 3807.899 kb on + strand, within Psest_3647 at 3807.899 kb on + strand, within Psest_3647 at 3807.900 kb on - strand, within Psest_3647 at 3807.900 kb on - strand, within Psest_3647 at 3807.900 kb on - strand, within Psest_3647 at 3808.008 kb on + strand, within Psest_3647 at 3808.008 kb on + strand, within Psest_3647 at 3808.009 kb on - strand, within Psest_3647 at 3808.077 kb on + strand, within Psest_3647 at 3808.351 kb on + strand at 3808.463 kb on + strand, within Psest_3648 at 3808.576 kb on + strand, within Psest_3648 at 3808.576 kb on + strand, within Psest_3648 at 3808.577 kb on - strand, within Psest_3648 at 3808.634 kb on + strand, within Psest_3648 at 3808.634 kb on + strand, within Psest_3648 at 3808.635 kb on - strand, within Psest_3648 at 3808.854 kb on + strand, within Psest_3648 at 3808.854 kb on + strand, within Psest_3648 at 3808.854 kb on + strand, within Psest_3648 at 3808.855 kb on - strand, within Psest_3648 at 3808.855 kb on - strand, within Psest_3648 at 3808.855 kb on - strand, within Psest_3648 at 3808.855 kb on - strand, within Psest_3648 at 3808.855 kb on - strand, within Psest_3648 at 3808.855 kb on - strand, within Psest_3648 at 3808.858 kb on + strand, within Psest_3648 at 3808.858 kb on + strand, within Psest_3648 at 3808.858 kb on + strand, within Psest_3648 at 3809.109 kb on + strand, within Psest_3648
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml remove 3,806,613 + +0.0 3,806,614 - +0.3 3,806,618 + +0.3 3,806,619 - +0.5 3,806,632 - +0.0 3,806,632 - -0.4 3,806,649 + -0.5 3,806,649 + -2.0 3,806,649 + +0.6 3,806,649 + -0.3 3,806,650 - -0.2 3,806,722 - -0.5 3,806,751 + +0.0 3,806,751 + -0.3 3,806,751 + -0.3 3,806,751 + -0.9 3,806,752 - +0.4 3,806,752 - +0.4 3,806,752 - -0.2 3,806,752 - -0.1 3,806,752 - +1.1 3,806,752 - -0.3 3,806,752 - +0.1 3,806,752 - +0.8 3,806,752 - +0.6 3,806,752 - +0.0 3,806,752 - +1.6 3,806,753 + +0.6 3,806,754 - +1.6 3,806,754 - -0.1 3,806,754 - +1.0 3,806,754 - -0.1 3,806,754 - +0.7 3,806,759 + -0.2 3,806,759 + +0.6 3,806,770 + -0.7 3,806,771 - -1.2 3,806,778 - +0.0 3,806,778 - +0.8 3,806,778 - -0.2 3,806,778 - -0.6 3,806,778 - +0.1 3,806,782 - +0.5 3,806,802 + -0.9 3,806,802 + -0.3 3,806,802 + +0.7 3,806,802 + -0.4 3,806,802 + +0.7 3,806,803 - +0.4 3,806,803 - +0.0 3,806,803 - -0.1 3,806,803 - -0.5 3,806,806 + -0.2 3,806,806 + -0.2 3,806,806 + -1.6 3,806,806 + +0.1 3,806,806 + -0.2 3,806,806 + -1.4 3,806,806 + +0.1 3,806,807 - +0.1 3,806,807 - +0.2 3,806,807 - -0.3 3,806,807 - +0.1 3,806,807 - -0.4 3,806,807 - +0.0 3,806,807 - +0.0 3,806,807 - -0.0 3,806,807 - -0.3 3,806,807 - +0.5 3,806,807 - +0.5 3,806,826 + -0.6 3,806,826 + -0.3 3,806,827 - +1.4 3,806,861 - +0.2 3,806,861 - +0.7 3,806,870 + Psest_3646 0.11 -0.1 3,806,894 + Psest_3646 0.15 -0.2 3,806,895 - Psest_3646 0.15 +0.0 3,806,953 + Psest_3646 0.24 +0.8 3,806,990 + Psest_3646 0.30 +0.5 3,807,107 + Psest_3646 0.48 +0.1 3,807,107 + Psest_3646 0.48 +0.9 3,807,107 + Psest_3646 0.48 -0.5 3,807,108 - Psest_3646 0.48 -0.4 3,807,108 - Psest_3646 0.48 +0.4 3,807,108 - Psest_3646 0.48 +0.2 3,807,401 + -1.3 3,807,402 - +0.3 3,807,540 + -0.4 3,807,541 - -1.5 3,807,541 - -0.3 3,807,560 + -4.1 3,807,610 - Psest_3647 0.14 -0.6 3,807,620 + Psest_3647 0.16 -2.5 3,807,621 - Psest_3647 0.16 -4.3 3,807,737 - Psest_3647 0.30 -2.2 3,807,869 - Psest_3647 0.45 -3.3 3,807,899 + Psest_3647 0.49 -4.7 3,807,899 + Psest_3647 0.49 -5.5 3,807,900 - Psest_3647 0.49 -3.2 3,807,900 - Psest_3647 0.49 -4.4 3,807,900 - Psest_3647 0.49 -3.7 3,808,008 + Psest_3647 0.62 -4.5 3,808,008 + Psest_3647 0.62 -4.9 3,808,009 - Psest_3647 0.62 -3.5 3,808,077 + Psest_3647 0.70 -3.5 3,808,351 + -2.7 3,808,463 + Psest_3648 0.13 -1.6 3,808,576 + Psest_3648 0.24 -3.3 3,808,576 + Psest_3648 0.24 -3.5 3,808,577 - Psest_3648 0.24 -2.8 3,808,634 + Psest_3648 0.29 -3.8 3,808,634 + Psest_3648 0.29 -4.2 3,808,635 - Psest_3648 0.29 -3.8 3,808,854 + Psest_3648 0.50 -4.3 3,808,854 + Psest_3648 0.50 -5.0 3,808,854 + Psest_3648 0.50 -3.5 3,808,855 - Psest_3648 0.50 -3.1 3,808,855 - Psest_3648 0.50 -4.5 3,808,855 - Psest_3648 0.50 -3.1 3,808,855 - Psest_3648 0.50 -4.3 3,808,855 - Psest_3648 0.50 -5.4 3,808,855 - Psest_3648 0.50 -4.6 3,808,858 + Psest_3648 0.51 -2.4 3,808,858 + Psest_3648 0.51 -4.2 3,808,858 + Psest_3648 0.51 -2.8 3,809,109 + Psest_3648 0.75 -3.9
Or see this region's nucleotide sequence