Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0357

Experiment: Def Cisplatin 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0356 and Psest_0357 are separated by 202 nucleotidesPsest_0357 and Psest_0358 overlap by 4 nucleotides Psest_0356: Psest_0356 - rarD protein, at 381,982 to 382,872 _0356 Psest_0357: Psest_0357 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 383,075 to 383,842 _0357 Psest_0358: Psest_0358 - Neutral trehalase, at 383,839 to 385,443 _0358 Position (kb) 383 384Strain fitness (log2 ratio) -2 -1 0 1at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.554 kb on - strand, within Psest_0356at 382.554 kb on - strand, within Psest_0356at 382.554 kb on - strand, within Psest_0356at 382.554 kb on - strand, within Psest_0356at 382.554 kb on - strand, within Psest_0356at 382.554 kb on - strand, within Psest_0356at 382.556 kb on + strand, within Psest_0356at 382.556 kb on + strand, within Psest_0356at 382.557 kb on - strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.715 kb on - strand, within Psest_0356at 382.796 kb on + strandat 382.797 kb on - strandat 382.844 kb on + strandat 382.938 kb on - strandat 382.950 kb on + strandat 382.950 kb on + strandat 382.950 kb on + strandat 382.951 kb on - strandat 383.027 kb on + strandat 383.027 kb on + strandat 383.224 kb on - strand, within Psest_0357at 383.224 kb on - strand, within Psest_0357at 383.224 kb on - strand, within Psest_0357at 383.394 kb on - strand, within Psest_0357at 383.394 kb on - strand, within Psest_0357at 383.541 kb on - strand, within Psest_0357at 383.780 kb on + strandat 383.780 kb on + strandat 383.780 kb on + strandat 383.780 kb on + strandat 383.780 kb on + strandat 383.781 kb on - strandat 383.781 kb on - strandat 383.781 kb on - strandat 383.781 kb on - strandat 383.781 kb on - strandat 383.781 kb on - strandat 383.781 kb on - strandat 383.781 kb on - strandat 383.820 kb on + strandat 383.828 kb on + strandat 383.829 kb on - strandat 383.829 kb on - strandat 383.829 kb on - strandat 383.829 kb on - strandat 383.829 kb on - strandat 383.829 kb on - strandat 383.872 kb on + strandat 383.872 kb on + strandat 383.872 kb on + strandat 383.872 kb on + strandat 383.873 kb on - strandat 383.873 kb on - strandat 383.873 kb on - strandat 383.873 kb on - strandat 384.094 kb on + strand, within Psest_0358at 384.232 kb on + strand, within Psest_0358at 384.232 kb on + strand, within Psest_0358at 384.232 kb on + strand, within Psest_0358at 384.233 kb on - strand, within Psest_0358at 384.233 kb on - strand, within Psest_0358at 384.233 kb on - strand, within Psest_0358at 384.233 kb on - strand, within Psest_0358at 384.265 kb on + strand, within Psest_0358at 384.265 kb on + strand, within Psest_0358at 384.266 kb on - strand, within Psest_0358at 384.266 kb on - strand, within Psest_0358at 384.266 kb on - strand, within Psest_0358at 384.266 kb on - strand, within Psest_0358at 384.266 kb on - strand, within Psest_0358at 384.266 kb on - strand, within Psest_0358at 384.266 kb on - strand, within Psest_0358at 384.266 kb on - strand, within Psest_0358at 384.266 kb on - strand, within Psest_0358at 384.266 kb on - strand, within Psest_0358at 384.269 kb on - strand, within Psest_0358at 384.280 kb on + strand, within Psest_0358at 384.281 kb on - strand, within Psest_0358at 384.281 kb on - strand, within Psest_0358at 384.281 kb on - strand, within Psest_0358at 384.281 kb on - strand, within Psest_0358at 384.281 kb on - strand, within Psest_0358at 384.281 kb on - strand, within Psest_0358at 384.281 kb on - strand, within Psest_0358at 384.352 kb on + strand, within Psest_0358at 384.368 kb on - strand, within Psest_0358at 384.397 kb on + strand, within Psest_0358at 384.397 kb on + strand, within Psest_0358at 384.398 kb on - strand, within Psest_0358at 384.398 kb on - strand, within Psest_0358at 384.398 kb on - strand, within Psest_0358at 384.401 kb on - strand, within Psest_0358at 384.401 kb on - strand, within Psest_0358at 384.481 kb on + strand, within Psest_0358at 384.506 kb on - strand, within Psest_0358at 384.506 kb on - strand, within Psest_0358at 384.814 kb on + strand, within Psest_0358at 384.814 kb on + strand, within Psest_0358at 384.814 kb on + strand, within Psest_0358at 384.815 kb on - strand, within Psest_0358at 384.815 kb on - strand, within Psest_0358at 384.815 kb on - strand, within Psest_0358

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml
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382,553 + Psest_0356 0.64 +1.7
382,553 + Psest_0356 0.64 +0.1
382,553 + Psest_0356 0.64 -0.5
382,553 + Psest_0356 0.64 -2.3
382,553 + Psest_0356 0.64 -0.0
382,553 + Psest_0356 0.64 +1.1
382,553 + Psest_0356 0.64 +0.3
382,553 + Psest_0356 0.64 -0.9
382,553 + Psest_0356 0.64 +0.6
382,553 + Psest_0356 0.64 +0.1
382,553 + Psest_0356 0.64 -0.3
382,553 + Psest_0356 0.64 -0.8
382,554 - Psest_0356 0.64 +1.5
382,554 - Psest_0356 0.64 +0.3
382,554 - Psest_0356 0.64 +0.7
382,554 - Psest_0356 0.64 -1.1
382,554 - Psest_0356 0.64 -0.7
382,554 - Psest_0356 0.64 +0.1
382,556 + Psest_0356 0.64 -0.9
382,556 + Psest_0356 0.64 +0.7
382,557 - Psest_0356 0.65 -0.0
382,604 + Psest_0356 0.70 -1.7
382,604 + Psest_0356 0.70 -0.8
382,604 + Psest_0356 0.70 -1.2
382,604 + Psest_0356 0.70 +0.1
382,604 + Psest_0356 0.70 +0.1
382,604 + Psest_0356 0.70 -0.2
382,604 + Psest_0356 0.70 +0.7
382,604 + Psest_0356 0.70 -0.1
382,604 + Psest_0356 0.70 +0.2
382,604 + Psest_0356 0.70 -0.2
382,605 - Psest_0356 0.70 +0.4
382,605 - Psest_0356 0.70 +0.1
382,605 - Psest_0356 0.70 -0.8
382,605 - Psest_0356 0.70 -0.1
382,605 - Psest_0356 0.70 +0.3
382,605 - Psest_0356 0.70 -0.4
382,605 - Psest_0356 0.70 +0.4
382,605 - Psest_0356 0.70 +0.4
382,605 - Psest_0356 0.70 -0.8
382,605 - Psest_0356 0.70 -1.7
382,605 - Psest_0356 0.70 +0.1
382,605 - Psest_0356 0.70 +0.3
382,605 - Psest_0356 0.70 +0.5
382,605 - Psest_0356 0.70 -0.5
382,715 - Psest_0356 0.82 -0.3
382,796 + -0.0
382,797 - -0.5
382,844 + +1.1
382,938 - -0.8
382,950 + -1.9
382,950 + +0.1
382,950 + +0.3
382,951 - +0.7
383,027 + -1.2
383,027 + +0.7
383,224 - Psest_0357 0.19 -1.8
383,224 - Psest_0357 0.19 -1.5
383,224 - Psest_0357 0.19 -1.5
383,394 - Psest_0357 0.42 +1.1
383,394 - Psest_0357 0.42 +0.7
383,541 - Psest_0357 0.61 -0.4
383,780 + -0.2
383,780 + +0.1
383,780 + +1.6
383,780 + +0.2
383,780 + -0.5
383,781 - +0.6
383,781 - -0.3
383,781 - -0.5
383,781 - +0.6
383,781 - -0.7
383,781 - +0.3
383,781 - -0.5
383,781 - +0.3
383,820 + +0.1
383,828 + -0.4
383,829 - +0.2
383,829 - -1.2
383,829 - +0.2
383,829 - +1.1
383,829 - -0.5
383,829 - +0.2
383,872 + -0.7
383,872 + -0.9
383,872 + -1.2
383,872 + -0.0
383,873 - +0.5
383,873 - +0.1
383,873 - +0.1
383,873 - +0.3
384,094 + Psest_0358 0.16 +0.6
384,232 + Psest_0358 0.24 +0.6
384,232 + Psest_0358 0.24 -1.7
384,232 + Psest_0358 0.24 +0.1
384,233 - Psest_0358 0.25 -0.1
384,233 - Psest_0358 0.25 -0.9
384,233 - Psest_0358 0.25 -0.7
384,233 - Psest_0358 0.25 -0.1
384,265 + Psest_0358 0.27 +0.3
384,265 + Psest_0358 0.27 +0.8
384,266 - Psest_0358 0.27 -0.4
384,266 - Psest_0358 0.27 +1.3
384,266 - Psest_0358 0.27 -0.1
384,266 - Psest_0358 0.27 +0.1
384,266 - Psest_0358 0.27 -0.5
384,266 - Psest_0358 0.27 +0.8
384,266 - Psest_0358 0.27 +0.5
384,266 - Psest_0358 0.27 +0.1
384,266 - Psest_0358 0.27 -1.0
384,266 - Psest_0358 0.27 +0.2
384,269 - Psest_0358 0.27 +0.5
384,280 + Psest_0358 0.27 +0.4
384,281 - Psest_0358 0.28 -0.6
384,281 - Psest_0358 0.28 -1.3
384,281 - Psest_0358 0.28 +0.4
384,281 - Psest_0358 0.28 -0.1
384,281 - Psest_0358 0.28 +1.3
384,281 - Psest_0358 0.28 -1.5
384,281 - Psest_0358 0.28 -0.6
384,352 + Psest_0358 0.32 -0.5
384,368 - Psest_0358 0.33 -0.8
384,397 + Psest_0358 0.35 +0.2
384,397 + Psest_0358 0.35 +0.7
384,398 - Psest_0358 0.35 -0.3
384,398 - Psest_0358 0.35 -0.0
384,398 - Psest_0358 0.35 -0.2
384,401 - Psest_0358 0.35 +0.1
384,401 - Psest_0358 0.35 -0.1
384,481 + Psest_0358 0.40 +0.6
384,506 - Psest_0358 0.42 +0.7
384,506 - Psest_0358 0.42 +0.5
384,814 + Psest_0358 0.61 -0.5
384,814 + Psest_0358 0.61 -0.3
384,814 + Psest_0358 0.61 -0.3
384,815 - Psest_0358 0.61 +0.8
384,815 - Psest_0358 0.61 -0.5
384,815 - Psest_0358 0.61 +0.6

Or see this region's nucleotide sequence