Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3177
Experiment: Def Cisplatin 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Def Cisplatin 0.0002 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,348,682 | + | Psest_3176 | 0.33 | +0.5 | |
3,348,684 | + | Psest_3176 | 0.33 | -1.2 | |
3,348,684 | + | Psest_3176 | 0.33 | -0.3 | |
3,348,768 | + | Psest_3176 | 0.38 | -1.0 | |
3,348,957 | + | Psest_3176 | 0.51 | -0.0 | |
3,348,958 | - | Psest_3176 | 0.51 | -1.3 | |
3,349,081 | + | Psest_3176 | 0.60 | +0.5 | |
3,349,260 | + | Psest_3176 | 0.72 | -0.6 | |
3,349,336 | + | Psest_3176 | 0.77 | -0.3 | |
3,349,336 | + | Psest_3176 | 0.77 | -1.0 | |
3,349,336 | + | Psest_3176 | 0.77 | +0.3 | |
3,349,337 | - | Psest_3176 | 0.77 | -2.8 | |
3,349,340 | + | Psest_3176 | 0.77 | -0.1 | |
3,349,386 | + | Psest_3176 | 0.80 | -0.8 | |
3,349,451 | + | Psest_3176 | 0.85 | -0.3 | |
3,349,827 | + | Psest_3177 | 0.71 | -0.6 | |
3,349,827 | + | Psest_3177 | 0.71 | -1.0 | |
3,349,828 | - | Psest_3177 | 0.72 | -2.8 | |
3,349,930 | - | -1.0 | |||
3,349,930 | - | -2.6 | |||
3,349,990 | + | Psest_3178 | 0.10 | -0.8 | |
3,350,093 | + | Psest_3178 | 0.22 | -3.4 | |
3,350,093 | + | Psest_3178 | 0.22 | -1.0 | |
3,350,093 | + | Psest_3178 | 0.22 | -0.9 | |
3,350,093 | + | Psest_3178 | 0.22 | -0.8 | |
3,350,094 | - | Psest_3178 | 0.22 | -3.9 | |
3,350,430 | + | Psest_3178 | 0.62 | -0.4 | |
3,350,675 | + | -1.3 | |||
3,350,675 | + | -0.4 | |||
3,350,675 | + | -0.4 | |||
3,350,849 | + | -0.5 |
Or see this region's nucleotide sequence